Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012066.1

Orthogroup ID

OG0012729

Physical Location & Seq

Genomic Coordinates Forward (+)

39338 .. 39963

Gene Structure 626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012066.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgtttaatctcaaaaagagtttcacaggcaagtctgtttctaaacgagataatgataaaagagatgtaaacctggagaggcttgaggccggtcttgctactgctagagagttgataagggaagcaacaaagctaaaccaaacaagtacacttgaagatgccgattatgttccacacggtgatatttacaggaacgcctatgcctttcaccggagctacctcttaatggaaagcctttttaagatttttgtctatgaagagggagagcctccaatattccacaatggtccttgcaagaacatatactctatggaaggactctttctcagcttcatgggaactgataccaaattccaaactttggatccagaaaaagcgcatgtctatttccttccttttagtgtggtgaagatcattgagtacctctttcatccaattattcgagacaaagctgttttacaacgcaccgtggttgattatgttcgagtcatatccaacaagtacccattttggaatagaagcctagcttggggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

178

Amino Acids

20.8

Weight (kDa)

8.54

Isoelectric Point (pI)

29.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07620
fragaria_vesca	FvH4_6g40270 FvH4_6g40270
malus_domestica	MD17G1120500.v1.1
prunus_persica	Prupe.3G193400_v2.0.a1
pyrus_communis	pycom17g11120
rosa_chinensis	RchiOBHm_Chr2g0155401
rosa_laevigata	RLG00000020836
rosa_multiflora	Rmu_sc0012066.1_g000012
rosa_roxburghii	Rroxscaffold_2G00093770
rosa_rugosa	Rorug02G0446800 Rorug02G0446900 Rorug02G0447000
rosa_samantha	Rh2AG513200 Rh2BG523800 Rh2CG498200 Rh2DG533500
rosa_wichuraiana	Rw2G042170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	361
AclWI	GGATC	2 cut(s)	359, 372
AcsI	RAATTY	1 cut(s)	350
AdeI	CACNNNGTG	1 cut(s)	179
AfaI	GTAC	3 cut(s)	148, 422, 503
AfiI	CCNNNNNNNGG	4 cut(s)	210, 226, 361, 529
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	72
AjuI	GAANNNNNNNTTGG	1 cut(s)	511
AluBI	AGCT	5 cut(s)	133, 216, 330, 452, 527
AluI	AGCT	5 cut(s)	133, 216, 330, 452, 527
Alw26I	GTCTC	1 cut(s)	438
AlwI	GGATC	2 cut(s)	359, 372
AoxI	GGCC	1 cut(s)	87
ApoI	RAATTY	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	3 cut(s)	191, 200, 418
AvaII	GGWCC	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	364
BciT130I	CCWGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	438
BfaI	CTAG	2 cut(s)	105, 524
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	468
BsaWI	WCCGGW	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	4 cut(s)	210, 226, 361, 529
Bse118I	RCCGGY	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	4 cut(s)	210, 226, 361, 529
BseMII	CTCAG	1 cut(s)	340
BshFI	GGCC	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	90, 211
BslI	CCNNNNNNNGG	4 cut(s)	210, 226, 361, 529
BsmAI	GTCTC	1 cut(s)	438
BsnI	GGCC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	364, 411
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	366
BspPI	GGATC	2 cut(s)	359, 372
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	2 cut(s)	364, 411
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	179, 469
Bst6I	CTCTTC	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	326
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	2 cut(s)	367, 414
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	2 cut(s)	364, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	89
BtgI	CCRYGG	1 cut(s)	468
BtsCI	GGATG	1 cut(s)	430
CfoI	GCGC	1 cut(s)	379
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	3 cut(s)	147, 421, 502
CviAII	CATG	2 cut(s)	334, 380
CviQI	GTAC	3 cut(s)	147, 421, 502
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	2 cut(s)	366, 413
DpnII	GATC	2 cut(s)	364, 411
DraIII	CACNNNGTG	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	337, 383
FalI	AAGNNNNNCTT	1 cut(s)	511
FatI	CATG	2 cut(s)	333, 379
FokI	GGATG	1 cut(s)	417
FspBI	CTAG	2 cut(s)	105, 524
GlaI	GCGC	1 cut(s)	378
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	2 cut(s)	90, 211
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	2 cut(s)	337, 383
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HinfI	GANTC	2 cut(s)	318, 486
HpaII	CCGG	2 cut(s)	90, 211
HphI	GGTGA	3 cut(s)	191, 200, 418
Hpy166II	GTNNAC	2 cut(s)	70, 149
Hpy188III	TCNNGA	2 cut(s)	368, 443
Hpy8I	GTNNAC	2 cut(s)	70, 149
HpyAV	CCTTC	2 cut(s)	308, 401
HpyCH4III	ACNGT	2 cut(s)	179, 469
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	326
Hsp92II	CATG	2 cut(s)	337, 383
HspAI	GCGC	1 cut(s)	377
Kzo9I	GATC	2 cut(s)	364, 411
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	7 cut(s)	12, 59, 86, 103, 175, 224, 381
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	2 cut(s)	105, 524
MalI	GATC	2 cut(s)	366, 413
MboI	GATC	2 cut(s)	364, 411
MboII	GAAGA	3 cut(s)	167, 269, 421
MflI	RGATCY	1 cut(s)	364
MluCI	AATT	2 cut(s)	350, 435
MlyI	GAGTC	2 cut(s)	312, 495
MmeI	TCCRAC	1 cut(s)	519
MnlI	CCTC	6 cut(s)	72, 79, 230, 253, 279, 434
MseI	TTAA	3 cut(s)	6, 224, 240
MspI	CCGG	2 cut(s)	90, 211
MspR9I	CCNGG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	2 cut(s)	364, 411
NlaIII	CATG	2 cut(s)	337, 383
NlaIV	GGNNCC	1 cut(s)	366
NspI	RCATGY	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	361
PleI	GAGTC	2 cut(s)	312, 494
PpsI	GAGTC	2 cut(s)	312, 494
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	3 cut(s)	148, 422, 503
RsaNI	GTAC	3 cut(s)	147, 421, 502
SaqAI	TTAA	3 cut(s)	6, 224, 240
Sau3AI	GATC	2 cut(s)	364, 411
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	2 cut(s)	312, 495
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	8 cut(s)	75, 135, 218, 222, 332, 426, 454, 529
SfaNI	GCATC	1 cut(s)	148
SinI	GGWCC	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	2 cut(s)	350, 435
SspI	AATATT	1 cut(s)	276
SspMI	CTAG	2 cut(s)	105, 524
StyD4I	CCNGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	179, 469
TaqI	TCGA	2 cut(s)	442, 484
TasI	AATT	2 cut(s)	350, 435
TatI	WGTACW	1 cut(s)	146
Tru1I	TTAA	3 cut(s)	6, 224, 240
Tru9I	TTAA	3 cut(s)	6, 224, 240
TspDTI	ATGAA	3 cut(s)	270, 322, 419
Van91I	CCANNNNNTGG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	350
XceI	RCATGY	1 cut(s)	383
XspI	CTAG	2 cut(s)	105, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.