Rh2CG498200

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012729
Physical Location & Seq
Forward (+)
67044017 .. 67046596
2580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG498200.1

Sequence Viewer

Length: 1224 bp
ATGTTTAATCTCAAAAAGAGTTTCACAGGCAAGTCTGTTTCTAAACGAGATAATGATAAAAGAGATGTAAACCTGGAGAGGCTTGAGGCCGGTCTTGCTACTGCTAGAGAGTTGATAAGGGAAGCAACAAAGCTAAACCAAACAAGTACACTTGAAGATGCCGATTATGTTCCACACGGCGATATTTACAGGAACGCCTATGCCTTTCACCGGAGCTACCTCTTAATGGAAAGACTTTTTAAGATTTTTGTCTATGAAGAGGGAGAGCCTCCAATATTCCACAATGGTCCTTGCAAGAACATATACTCTATGGAAGGACTCTTTCTCAGCTTCATGGGAACTGATACCAAATTCCGAACTTTGGATCCAGAAAAAGCTCATGTCTATTTCCTTCCTTTTAGTGTGGTGATGATCATTGAGTACCTCTTTCATCCAATTATTCGAGACAAAGCTGTTTTACAACGCACCGTGGTTGATTATGTTCGAGTCATATCCAACAAGTACCCATTTTGGAATAGAAGCCTTGGGGCTGATCATGTAGTGCTTTCTTGCCATGATTGGGGGCCAAGGGCGACATGGTATGTTCGACAGCTATACTTTGTTGCCATTCGTGTACTATGCAATGCGAACACCTCCGAGCACTTCAACCCTAAGAAAGATGCATCATTCCCCGAAATCAATCTTAAAACAGGTGAAATTACAGGTTTAATTGGAGGCTTCCCCCCCTCCAAGCGTTCTATCCTAGCCTTCTTTGCAGGACGAATGCATGGACGAATCAGACCATTGCTTTTCCAACACTGGAAAGAAAAAGATAAAGATCTACTGGTTTATGAAACACTCCCCAAGAAATTTTCGTACCATGACATGTTGAAGAAAAGCAAGTATTGCATTTGCCCAAGCGGTCATGAAGTCGCTAGTCCAAGGATCGTAGAGGCAATTTATGCAGAGTGTGTTCCAGTTTTGATTTCACAGCATTATGTTCTGCCTTTCAATGATGTTCTAGATTGGGAGTCCTTTTCTATTCAAGTATCTGTGAGTGAAATACCACAACTTAAGGAAATCTTAATGGGGATTCCTGAAGAGAAGTATAGAAGAATGCAGGAAAGAGTGAAACAAGTGCAAAGGCATTTTGTGGTGAACAATCCCCCCAACAGATTTGATGTTTTTCATATGATAATTCATTCAATATGGCTTAGGAGACTCAATGTACGTATTTATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

407

Amino Acids

47.7

Weight (kDa)

9.2

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 77 - 356 3.7e-57 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07620
fragaria_vesca FvH4_6g40270 FvH4_6g40270
malus_domestica MD17G1120500.v1.1
prunus_persica Prupe.3G193400_v2.0.a1
pyrus_communis pycom17g11120
rosa_chinensis RchiOBHm_Chr2g0155401
rosa_laevigata RLG00000020836
rosa_multiflora Rmu_sc0012066.1_g000012
rosa_roxburghii Rroxscaffold_2G00093770
rosa_rugosa Rorug02G0446800 Rorug02G0446900 Rorug02G0447000
rosa_samantha Rh2AG513200 Rh2BG523800 Rh2CG498200 Rh2DG533500
rosa_wichuraiana Rw2G042170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 900
AclWI GGATC 3 cut(s) 359, 372, 932
AcsI RAATTY 2 cut(s) 350, 848
AcuI CTGAAG 1 cut(s) 1098
AfaI GTAC 6 cut(s) 148, 422, 503, 615, 857, 1209
AfiI CCNNNNNNNGG 4 cut(s) 210, 226, 361, 559
AflII CTTAAG 1 cut(s) 1052
AflIII ACRYGT 1 cut(s) 864
AgsI TTSAA 6 cut(s) 155, 646, 871, 991, 1025, 1185
AjnI CCWGG 1 cut(s) 72
AloI GAACNNNNNNTCC 2 cut(s) 349, 381
AluBI AGCT 6 cut(s) 133, 216, 330, 377, 452, 592
AluI AGCT 6 cut(s) 133, 216, 330, 377, 452, 592
Alw21I GWGCWC 1 cut(s) 642
Alw26I GTCTC 2 cut(s) 438, 1192
AlwI GGATC 3 cut(s) 359, 372, 932
AoxI GGCC 2 cut(s) 87, 563
ApoI RAATTY 2 cut(s) 350, 848
AspS9I GGNCC 2 cut(s) 287, 563
AsuHPI GGTGA 4 cut(s) 200, 418, 704, 1147
AvaII GGWCC 1 cut(s) 287
BamHI GGATCC 1 cut(s) 364
Bbv12I GWGCWC 1 cut(s) 642
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 74
BclI TGATCA 2 cut(s) 411, 532
BcoDI GTCTC 2 cut(s) 438, 1192
BfaI CTAG 4 cut(s) 105, 743, 915, 1001
BfrI CTTAAG 1 cut(s) 1052
BglII AGATCT 1 cut(s) 817
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 2 cut(s) 287, 563
BmiI GGNNCC 2 cut(s) 366, 564
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 3 cut(s) 148, 649, 671
BpmI CTGGAG 1 cut(s) 95
Bpu10I CCTNAGC 1 cut(s) 1193
BpuEI CTTGAG 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 1211
BsaBI GATNNNNATC 1 cut(s) 816
BsaJI CCNNGG 4 cut(s) 468, 523, 566, 920
BsaWI WCCGGW 1 cut(s) 210
Bsc4I CCNNNNNNNGG 4 cut(s) 210, 226, 361, 559
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 3 cut(s) 803, 828, 956
Bse3DI GCAATG 2 cut(s) 628, 782
Bse8I GATNNNNATC 1 cut(s) 816
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 4 cut(s) 468, 523, 566, 920
BseGI GGATG 1 cut(s) 430
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 4 cut(s) 210, 226, 361, 559
BseMI GCAATG 2 cut(s) 628, 782
BseMII CTCAG 1 cut(s) 340
BseNI ACTGG 3 cut(s) 803, 828, 956
BshFI GGCC 2 cut(s) 89, 565
BsiHKAI GWGCWC 1 cut(s) 642
BsiSI CCGG 2 cut(s) 90, 211
BslI CCNNNNNNNGG 4 cut(s) 210, 226, 361, 559
BsmAI GTCTC 2 cut(s) 438, 1192
BsmI GAATGC 2 cut(s) 768, 1101
BsnI GGCC 2 cut(s) 89, 565
Bsp1286I GDGCHC 1 cut(s) 642
Bsp143I GATC 5 cut(s) 364, 411, 532, 817, 924
BspACI CCGC 1 cut(s) 900
BspANI GGCC 2 cut(s) 89, 565
BspCNI CTCAG 1 cut(s) 339
BspHI TCATGA 1 cut(s) 904
BspLI GGNNCC 2 cut(s) 366, 564
BspPI GGATC 3 cut(s) 359, 372, 932
BspTI CTTAAG 1 cut(s) 1052
BsrDI GCAATG 2 cut(s) 628, 782
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 3 cut(s) 803, 828, 956
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 4 cut(s) 468, 523, 566, 920
BssMI GATC 5 cut(s) 364, 411, 532, 817, 924
BssT1I CCWWGG 3 cut(s) 523, 566, 920
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 469
Bst6I CTCTTC 2 cut(s) 252, 1074
BstAFI CTTAAG 1 cut(s) 1052
BstAPI GCANNNNNTGC 2 cut(s) 885, 941
BstBAI YACGTR 1 cut(s) 1211
BstDEI CTNAG 3 cut(s) 326, 651, 1193
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 1 cut(s) 430
BstKTI GATC 5 cut(s) 367, 414, 535, 820, 927
BstMAI GTCTC 2 cut(s) 438, 1192
BstMBI GATC 5 cut(s) 364, 411, 532, 817, 924
BstMWI GCNNNNNNNGC 4 cut(s) 95, 752, 885, 941
BstNI CCWGG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 868
BstSCI CCNGG 1 cut(s) 72
BstSNI TACGTA 1 cut(s) 1211
BstX2I RGATCY 2 cut(s) 364, 817
BstYI RGATCY 2 cut(s) 364, 817
BsuRI GGCC 2 cut(s) 89, 565
BtgI CCRYGG 1 cut(s) 468
BtsCI GGATG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 796
CciI TCATGA 1 cut(s) 904
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 287, 563
Csp6I GTAC 6 cut(s) 147, 421, 502, 614, 856, 1208
CviAII CATG 9 cut(s) 334, 380, 536, 554, 576, 767, 860, 865, 905
CviQI GTAC 6 cut(s) 147, 421, 502, 614, 856, 1208
DdeI CTNAG 3 cut(s) 326, 651, 1193
DpnI GATC 5 cut(s) 366, 413, 534, 819, 926
DpnII GATC 5 cut(s) 364, 411, 532, 817, 924
Eam1104I CTCTTC 2 cut(s) 252, 1074
EarI CTCTTC 2 cut(s) 252, 1074
Eco105I TACGTA 1 cut(s) 1211
Eco130I CCWWGG 3 cut(s) 523, 566, 920
Eco47I GGWCC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 1098
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 3 cut(s) 523, 566, 920
EcoT22I ATGCAT 2 cut(s) 664, 768
ErhI CCWWGG 3 cut(s) 523, 566, 920
FaeI CATG 9 cut(s) 337, 383, 539, 557, 579, 770, 863, 868, 908
FalI AAGNNNNNCTT 2 cut(s) 1046, 1078
FatI CATG 9 cut(s) 333, 379, 535, 553, 575, 766, 859, 864, 904
FauNDI CATATG 1 cut(s) 1170
FbaI TGATCA 2 cut(s) 411, 532
FokI GGATG 1 cut(s) 417
FspBI CTAG 4 cut(s) 105, 743, 915, 1001
GsuI CTGGAG 1 cut(s) 95
HaeIII GGCC 2 cut(s) 89, 565
HapII CCGG 2 cut(s) 90, 211
Hin1II CATG 9 cut(s) 337, 383, 539, 557, 579, 770, 863, 868, 908
HinfI GANTC 6 cut(s) 318, 486, 774, 1010, 1072, 1200
HpaII CCGG 2 cut(s) 90, 211
HphI GGTGA 4 cut(s) 200, 418, 704, 1147
Hpy166II GTNNAC 4 cut(s) 70, 149, 614, 1138
Hpy188I TCNGA 3 cut(s) 356, 637, 779
Hpy188III TCNNGA 5 cut(s) 368, 443, 905, 1001, 1076
Hpy8I GTNNAC 4 cut(s) 70, 149, 614, 1138
HpyAV CCTTC 3 cut(s) 308, 401, 757
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4IV ACGT 1 cut(s) 1210
HpyCH4V TGCA 9 cut(s) 294, 621, 662, 755, 766, 888, 944, 1099, 1120
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 752, 885, 941
HpyF3I CTNAG 3 cut(s) 326, 651, 1193
HpySE526I ACGT 1 cut(s) 1210
Hsp92II CATG 9 cut(s) 337, 383, 539, 557, 579, 770, 863, 868, 908
Ksp22I TGATCA 2 cut(s) 411, 532
Kzo9I GATC 5 cut(s) 364, 411, 532, 817, 924
LmnI GCTCC 1 cut(s) 213
LweI GCATC 3 cut(s) 148, 649, 671
MaeI CTAG 4 cut(s) 105, 743, 915, 1001
MaeII ACGT 1 cut(s) 1210
MalI GATC 5 cut(s) 366, 413, 534, 819, 926
MboI GATC 5 cut(s) 364, 411, 532, 817, 924
MboII GAAGA 5 cut(s) 167, 269, 883, 1091, 1104
MflI RGATCY 2 cut(s) 364, 817
MhlI GDGCHC 1 cut(s) 642
MluCI AATT 7 cut(s) 350, 435, 696, 708, 848, 936, 1176
MlyI GAGTC 4 cut(s) 312, 495, 1019, 1194
MmeI TCCRAC 2 cut(s) 519, 817
Mph1103I ATGCAT 2 cut(s) 664, 768
MseI TTAA 7 cut(s) 6, 224, 240, 684, 707, 1053, 1064
MspCI CTTAAG 1 cut(s) 1052
MspI CCGG 2 cut(s) 90, 211
MspR9I CCNGG 1 cut(s) 74
Mva1269I GAATGC 2 cut(s) 768, 1101
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 4 cut(s) 95, 752, 885, 941
NdeI CATATG 1 cut(s) 1170
NdeII GATC 5 cut(s) 364, 411, 532, 817, 924
NlaIII CATG 9 cut(s) 337, 383, 539, 557, 579, 770, 863, 868, 908
NlaIV GGNNCC 2 cut(s) 366, 564
NsiI ATGCAT 2 cut(s) 664, 768
NspI RCATGY 1 cut(s) 868
PagI TCATGA 1 cut(s) 904
PciI ACATGT 1 cut(s) 864
PctI GAATGC 2 cut(s) 768, 1101
PfeI GAWTC 2 cut(s) 774, 1072
PleI GAGTC 4 cut(s) 312, 494, 1018, 1194
PpsI GAGTC 4 cut(s) 312, 494, 1018, 1194
Ppu21I YACGTR 1 cut(s) 1211
PscI ACATGT 1 cut(s) 864
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 366, 564
PspPI GGNCC 2 cut(s) 287, 563
PsuI RGATCY 2 cut(s) 364, 817
RsaI GTAC 6 cut(s) 148, 422, 503, 615, 857, 1209
RsaNI GTAC 6 cut(s) 147, 421, 502, 614, 856, 1208
SaqAI TTAA 7 cut(s) 6, 224, 240, 684, 707, 1053, 1064
Sau3AI GATC 5 cut(s) 364, 411, 532, 817, 924
Sau96I GGNCC 2 cut(s) 287, 563
SchI GAGTC 4 cut(s) 312, 495, 1019, 1194
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 642
SfaNI GCATC 3 cut(s) 148, 649, 671
SinI GGWCC 1 cut(s) 287
SmlI CTYRAG 2 cut(s) 83, 1052
SmoI CTYRAG 2 cut(s) 83, 1052
SnaBI TACGTA 1 cut(s) 1211
Sse9I AATT 7 cut(s) 350, 435, 696, 708, 848, 936, 1176
SsiI CCGC 1 cut(s) 900
SspI AATATT 1 cut(s) 276
SspMI CTAG 4 cut(s) 105, 743, 915, 1001
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 3 cut(s) 523, 566, 920
TaaI ACNGT 1 cut(s) 469
TaiI ACGT 1 cut(s) 1213
TaqI TCGA 3 cut(s) 442, 484, 586
TasI AATT 7 cut(s) 350, 435, 696, 708, 848, 936, 1176
TatI WGTACW 2 cut(s) 146, 613
TfiI GAWTC 2 cut(s) 774, 1072
Tru1I TTAA 7 cut(s) 6, 224, 240, 684, 707, 1053, 1064
Tru9I TTAA 7 cut(s) 6, 224, 240, 684, 707, 1053, 1064
TscAI CASTG 1 cut(s) 803
TspDTI ATGAA 7 cut(s) 270, 322, 419, 846, 921, 1157, 1169
TspRI CASTG 1 cut(s) 803
Vha464I CTTAAG 1 cut(s) 1052
VpaK11BI GGWCC 1 cut(s) 287
XapI RAATTY 2 cut(s) 350, 848
XbaI TCTAGA 1 cut(s) 1000
XceI RCATGY 1 cut(s) 868
XcmI CCANNNNNNNNNTGG 1 cut(s) 573
XspI CTAG 4 cut(s) 105, 743, 915, 1001
Zsp2I ATGCAT 2 cut(s) 664, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.