RchiOBHm_Chr2g0155401

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012729
Physical Location & Seq
Forward (+)
72260654 .. 72262658
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52429

Sequence Viewer

Length: 1398 bp
ATGCCAAAGCAGGCTCATAGAAGATCATACCAAAATGTCTTTGTACTGTTTGCAATGGCTTTCTTTGCTATAGTCTCAGTGGTTGTTATGCCAAAGGCCCATGGAGGAATATCTACTTGGTTGGGTTTAACTAGTACCATAGGTATGAGTTCTGATTCTCAGTTCAGATTCAACAATATTTCTGGAAACGGGAGTTTCACAGGCAAGTCTGTTTCTAAACGAGATAATGATAAAAGAGATGTAAACCTGGAGAGGCTTGAGGCCGGTCTTGCTACTGCTAGAGAGTTGATAAGGGAAGCAACAAAGCTAAACCAAACAAGTACACTTGAAGATGCCGATTATGTTCCACACGGCGATATTTACAGGAACGCCTATGCCTTTCACCGGAGCTACCTCTTAATGGAAAGACTTTTTAAGATTTTTGTCTATGAAGAGGGAGAGCCTCCAATATTCCACAATGGTCCTTGCAAGAACATATACTCTATGGAAGGACTCTTTCTCAGCTTCATGGGAACTGATACCAAATTCCGAACTTTGGATCCAGAAAAAGCTCATGTCTATTTCCTTCCTTTTAGTGTGGTGATGATCATTGAGTACCTCTTTGATCCAATTATTCGAGACAAAGCTGTTTTACAACGCACCGTGGTTGATTATGTTCGAGTCATATCCAACAAGTACCCATTTTGGAATAGAAGCCTTGGGGCTGATCATGTAGTGCTTTCTTGCCATGATTGGGGGCCAAGGGCGACATGGTATGTTCGACAGCTATACTTTGTTGCCATTCGTGTACTATGCAATGCGAACACCTCCGAGCACTTCAACCCTAAGAAAGATGCATCATTCCCCGAAATCAATCTTAAAACAGGTGAAATTACAGGTTTAATTGGAGGCTTCCCCCCCTCCAAACGTTCTATCCTAGCCTTCTTTGCAGGACAAATGCATGGACGAATCAGACCATTGCTTTTCCAACACTGGAAAGAAAAAGATAAAGATCTACTGGTTTATGAAACACTCCCCAAGAAATTTTCGTACCATGACATGTTGAAGAAAAGCAAGTATTGCATTTGCCCAAGCGGTCATGAAGTCGCTAGTCCAAGGATCGTAGAGGCAATTTATGCAGAGTGTGTTCCAGTTTTGATTTCACAGCATTATGTTCTGCCTTTCAGTGATGTTCTAGATTGGGAGTCCTTTTCTATTCAAGTATCTGTGAGTGAAATACCACAACTTAAGGAAATCTTAATGGGGATTCCTGAAGAGAAGTATAGAAGAATGCAGGAAAGAGTGAAACAAGTGCAAAGGCATTTTGTGGTGAACAATCCCCCCAACAGATTTGATGTTTTTCATATGATAATTCATTCAATATGGCTTAGGAGACTCAATGTACGTATTTATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

465

Amino Acids

53.86

Weight (kDa)

9.19

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 135 - 414 1.4e-57 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07620
fragaria_vesca FvH4_6g40270 FvH4_6g40270
malus_domestica MD17G1120500.v1.1
prunus_persica Prupe.3G193400_v2.0.a1
pyrus_communis pycom17g11120
rosa_chinensis RchiOBHm_Chr2g0155401
rosa_laevigata RLG00000020836
rosa_multiflora Rmu_sc0012066.1_g000012
rosa_roxburghii Rroxscaffold_2G00093770
rosa_rugosa Rorug02G0446800 Rorug02G0446900 Rorug02G0447000
rosa_samantha Rh2AG513200 Rh2BG523800 Rh2CG498200 Rh2DG533500
rosa_wichuraiana Rw2G042170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1074
AclI AACGTT 1 cut(s) 907
AclWI GGATC 4 cut(s) 533, 546, 599, 1106
AcsI RAATTY 2 cut(s) 524, 1022
AcuI CTGAAG 1 cut(s) 1272
AfaI GTAC 8 cut(s) 45, 136, 322, 596, 677, 789, 1031, 1383
AfiI CCNNNNNNNGG 4 cut(s) 384, 400, 535, 733
AflII CTTAAG 1 cut(s) 1226
AflIII ACRYGT 1 cut(s) 1038
AgsI TTSAA 6 cut(s) 172, 329, 820, 1045, 1199, 1359
AhlI ACTAGT 1 cut(s) 131
AjnI CCWGG 1 cut(s) 246
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AloI GAACNNNNNNTCC 2 cut(s) 523, 555
AluBI AGCT 6 cut(s) 307, 390, 504, 551, 626, 766
AluI AGCT 6 cut(s) 307, 390, 504, 551, 626, 766
Alw21I GWGCWC 1 cut(s) 816
Alw26I GTCTC 3 cut(s) 79, 612, 1366
AlwI GGATC 4 cut(s) 533, 546, 599, 1106
AoxI GGCC 3 cut(s) 96, 261, 737
ApoI RAATTY 2 cut(s) 524, 1022
AspS9I GGNCC 3 cut(s) 97, 461, 737
AsuHPI GGTGA 4 cut(s) 374, 592, 878, 1321
AvaII GGWCC 1 cut(s) 461
BamHI GGATCC 1 cut(s) 538
Bbv12I GWGCWC 1 cut(s) 816
BceAI ACGGC 1 cut(s) 367
BciT130I CCWGG 1 cut(s) 248
BclI TGATCA 2 cut(s) 585, 706
BcoDI GTCTC 3 cut(s) 79, 612, 1366
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 5 cut(s) 132, 279, 917, 1089, 1175
BfmI CTRYAG 1 cut(s) 69
BfrI CTTAAG 1 cut(s) 1226
BglII AGATCT 1 cut(s) 991
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 461
BmgT120I GGNCC 3 cut(s) 97, 461, 737
BmiI GGNNCC 2 cut(s) 540, 738
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 3 cut(s) 322, 823, 845
BpmI CTGGAG 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 1367
BpuEI CTTGAG 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 1385
BsaBI GATNNNNATC 1 cut(s) 990
BsaJI CCNNGG 5 cut(s) 100, 642, 697, 740, 1094
BsaWI WCCGGW 1 cut(s) 384
Bsc4I CCNNNNNNNGG 4 cut(s) 384, 400, 535, 733
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 3 cut(s) 977, 1002, 1130
Bse3DI GCAATG 3 cut(s) 60, 802, 956
Bse8I GATNNNNATC 1 cut(s) 990
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 5 cut(s) 100, 642, 697, 740, 1094
BseJI GATNNNNATC 1 cut(s) 990
BseLI CCNNNNNNNGG 4 cut(s) 384, 400, 535, 733
BseMI GCAATG 3 cut(s) 60, 802, 956
BseMII CTCAG 3 cut(s) 90, 173, 514
BseNI ACTGG 3 cut(s) 977, 1002, 1130
BshFI GGCC 3 cut(s) 98, 263, 739
BsiHKAI GWGCWC 1 cut(s) 816
BsiSI CCGG 2 cut(s) 264, 385
BslI CCNNNNNNNGG 4 cut(s) 384, 400, 535, 733
BsmAI GTCTC 3 cut(s) 79, 612, 1366
BsmI GAATGC 1 cut(s) 1275
BsnI GGCC 3 cut(s) 98, 263, 739
Bsp1286I GDGCHC 1 cut(s) 816
Bsp143I GATC 7 cut(s) 23, 538, 585, 604, 706, 991, 1098
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 1 cut(s) 1074
BspANI GGCC 3 cut(s) 98, 263, 739
BspCNI CTCAG 3 cut(s) 89, 172, 513
BspHI TCATGA 1 cut(s) 1078
BspLI GGNNCC 2 cut(s) 540, 738
BspPI GGATC 4 cut(s) 533, 546, 599, 1106
BspTI CTTAAG 1 cut(s) 1226
BsrDI GCAATG 3 cut(s) 60, 802, 956
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 3 cut(s) 977, 1002, 1130
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 5 cut(s) 100, 642, 697, 740, 1094
BssMI GATC 7 cut(s) 23, 538, 585, 604, 706, 991, 1098
BssT1I CCWWGG 4 cut(s) 100, 697, 740, 1094
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 2 cut(s) 48, 643
Bst6I CTCTTC 2 cut(s) 426, 1248
BstAFI CTTAAG 1 cut(s) 1226
BstAPI GCANNNNNTGC 2 cut(s) 1059, 1115
BstBAI YACGTR 1 cut(s) 1385
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 5 cut(s) 76, 159, 500, 825, 1367
BstDSI CCRYGG 2 cut(s) 100, 642
BstKTI GATC 7 cut(s) 26, 541, 588, 607, 709, 994, 1101
BstMAI GTCTC 3 cut(s) 79, 612, 1366
BstMBI GATC 7 cut(s) 23, 538, 585, 604, 706, 991, 1098
BstMWI GCNNNNNNNGC 5 cut(s) 65, 269, 926, 1059, 1115
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 1042
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 69
BstSNI TACGTA 1 cut(s) 1385
BstX2I RGATCY 2 cut(s) 538, 991
BstYI RGATCY 2 cut(s) 538, 991
BsuRI GGCC 3 cut(s) 98, 263, 739
BtgI CCRYGG 2 cut(s) 100, 642
BtsIMutI CAGTG 3 cut(s) 84, 970, 1171
Cac8I GCNNGC 1 cut(s) 12
CciI TCATGA 1 cut(s) 1078
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 3 cut(s) 97, 461, 737
Csp6I GTAC 8 cut(s) 44, 135, 321, 595, 676, 788, 1030, 1382
CviQI GTAC 8 cut(s) 44, 135, 321, 595, 676, 788, 1030, 1382
DdeI CTNAG 5 cut(s) 76, 159, 500, 825, 1367
DpnI GATC 7 cut(s) 25, 540, 587, 606, 708, 993, 1100
DpnII GATC 7 cut(s) 23, 538, 585, 604, 706, 991, 1098
Eam1104I CTCTTC 2 cut(s) 426, 1248
EarI CTCTTC 2 cut(s) 426, 1248
Eco105I TACGTA 1 cut(s) 1385
Eco130I CCWWGG 4 cut(s) 100, 697, 740, 1094
Eco47I GGWCC 1 cut(s) 461
Eco57I CTGAAG 1 cut(s) 1272
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 4 cut(s) 100, 697, 740, 1094
EcoT22I ATGCAT 2 cut(s) 838, 942
ErhI CCWWGG 4 cut(s) 100, 697, 740, 1094
FalI AAGNNNNNCTT 2 cut(s) 1220, 1252
FauNDI CATATG 1 cut(s) 1344
FbaI TGATCA 2 cut(s) 585, 706
FspBI CTAG 5 cut(s) 132, 279, 917, 1089, 1175
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 3 cut(s) 98, 263, 739
HapII CCGG 2 cut(s) 264, 385
HinfI GANTC 8 cut(s) 155, 168, 492, 660, 948, 1184, 1246, 1374
HpaII CCGG 2 cut(s) 264, 385
HphI GGTGA 4 cut(s) 374, 592, 878, 1321
Hpy166II GTNNAC 4 cut(s) 244, 323, 788, 1312
Hpy188I TCNGA 5 cut(s) 154, 167, 530, 811, 953
Hpy188III TCNNGA 6 cut(s) 183, 542, 617, 1079, 1175, 1250
Hpy8I GTNNAC 4 cut(s) 244, 323, 788, 1312
HpyAV CCTTC 3 cut(s) 482, 575, 931
HpyCH4III ACNGT 2 cut(s) 48, 643
HpyCH4IV ACGT 2 cut(s) 907, 1384
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 269, 926, 1059, 1115
HpyF3I CTNAG 5 cut(s) 76, 159, 500, 825, 1367
HpySE526I ACGT 2 cut(s) 907, 1384
Ksp22I TGATCA 2 cut(s) 585, 706
Kzo9I GATC 7 cut(s) 23, 538, 585, 604, 706, 991, 1098
LmnI GCTCC 1 cut(s) 387
LweI GCATC 3 cut(s) 322, 823, 845
MaeI CTAG 5 cut(s) 132, 279, 917, 1089, 1175
MaeII ACGT 2 cut(s) 907, 1384
MalI GATC 7 cut(s) 25, 540, 587, 606, 708, 993, 1100
MboI GATC 7 cut(s) 23, 538, 585, 604, 706, 991, 1098
MboII GAAGA 6 cut(s) 33, 341, 443, 1057, 1265, 1278
MflI RGATCY 2 cut(s) 538, 991
MhlI GDGCHC 1 cut(s) 816
MluCI AATT 7 cut(s) 524, 609, 870, 882, 1022, 1110, 1350
MlyI GAGTC 4 cut(s) 486, 669, 1193, 1368
MmeI TCCRAC 2 cut(s) 693, 991
Mph1103I ATGCAT 2 cut(s) 838, 942
MseI TTAA 7 cut(s) 128, 398, 414, 858, 881, 1227, 1238
MslI CAYNNNNRTG 1 cut(s) 143
MspCI CTTAAG 1 cut(s) 1226
MspI CCGG 2 cut(s) 264, 385
MspR9I CCNGG 1 cut(s) 248
Mva1269I GAATGC 1 cut(s) 1275
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 5 cut(s) 65, 269, 926, 1059, 1115
NcoI CCATGG 1 cut(s) 100
NdeI CATATG 1 cut(s) 1344
NdeII GATC 7 cut(s) 23, 538, 585, 604, 706, 991, 1098
NlaIV GGNNCC 2 cut(s) 540, 738
NsiI ATGCAT 2 cut(s) 838, 942
NspI RCATGY 1 cut(s) 1042
PagI TCATGA 1 cut(s) 1078
PciI ACATGT 1 cut(s) 1038
PctI GAATGC 1 cut(s) 1275
PfeI GAWTC 4 cut(s) 155, 168, 948, 1246
PleI GAGTC 4 cut(s) 486, 668, 1192, 1368
PpsI GAGTC 4 cut(s) 486, 668, 1192, 1368
Ppu21I YACGTR 1 cut(s) 1385
PscI ACATGT 1 cut(s) 1038
Psp1406I AACGTT 1 cut(s) 907
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 540, 738
PspPI GGNCC 3 cut(s) 97, 461, 737
PsuI RGATCY 2 cut(s) 538, 991
RsaI GTAC 8 cut(s) 45, 136, 322, 596, 677, 789, 1031, 1383
RsaNI GTAC 8 cut(s) 44, 135, 321, 595, 676, 788, 1030, 1382
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 7 cut(s) 128, 398, 414, 858, 881, 1227, 1238
Sau3AI GATC 7 cut(s) 23, 538, 585, 604, 706, 991, 1098
Sau96I GGNCC 3 cut(s) 97, 461, 737
SchI GAGTC 4 cut(s) 486, 669, 1193, 1368
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 816
SfaNI GCATC 3 cut(s) 322, 823, 845
SfcI CTRYAG 1 cut(s) 69
SinI GGWCC 1 cut(s) 461
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 2 cut(s) 257, 1226
SmoI CTYRAG 2 cut(s) 257, 1226
SnaBI TACGTA 1 cut(s) 1385
SpeI ACTAGT 1 cut(s) 131
Sse9I AATT 7 cut(s) 524, 609, 870, 882, 1022, 1110, 1350
SsiI CCGC 1 cut(s) 1074
SspI AATATT 2 cut(s) 178, 450
SspMI CTAG 5 cut(s) 132, 279, 917, 1089, 1175
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 4 cut(s) 100, 697, 740, 1094
TaaI ACNGT 2 cut(s) 48, 643
TaiI ACGT 2 cut(s) 910, 1387
TaqI TCGA 3 cut(s) 616, 658, 760
TasI AATT 7 cut(s) 524, 609, 870, 882, 1022, 1110, 1350
TatI WGTACW 3 cut(s) 43, 320, 787
TfiI GAWTC 4 cut(s) 155, 168, 948, 1246
Tru1I TTAA 7 cut(s) 128, 398, 414, 858, 881, 1227, 1238
Tru9I TTAA 7 cut(s) 128, 398, 414, 858, 881, 1227, 1238
TscAI CASTG 3 cut(s) 84, 977, 1171
TspDTI ATGAA 6 cut(s) 444, 496, 1020, 1095, 1331, 1343
TspRI CASTG 3 cut(s) 84, 977, 1171
Vha464I CTTAAG 1 cut(s) 1226
VpaK11BI GGWCC 1 cut(s) 461
XapI RAATTY 2 cut(s) 524, 1022
XbaI TCTAGA 1 cut(s) 1174
XceI RCATGY 1 cut(s) 1042
XcmI CCANNNNNNNNNTGG 1 cut(s) 747
XspI CTAG 5 cut(s) 132, 279, 917, 1089, 1175
Zsp2I ATGCAT 2 cut(s) 838, 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.