FvH4_6g40270

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012729
Physical Location & Seq
Forward (+)
31769524 .. 31771548
2025 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40270.t2

Sequence Viewer

Length: 1398 bp
ATGATGAGGCAGGTTCACAGAAGATTAAATAAAAATGTTTTTGTACTAGTTGCAATGGCTTTCTTTGCTATAGTCTCACTGGTTGTTACGCCAAAGAGCTATAAAGGAAGGTCTTCTTGGTTTGGTGTAACTAGTACTAGAGGTGTGAGTTCTGAGTCTCAGCTCAGATTCAACAATATTTCTGGACACACGGGTTTCACTAGCAAGTCTGTCTTGAAACGAGACAATGAGAAGGGAGATGTAAACCTGGAGAGGATTGAGGCCGGTCTTGCCACAGCTAGAGAGTTGATAAGGGAAGCAACAACACTAAACCAAACGAGTCCTCTTGAAGATGCCGATTATGTTCCGAATGGCGATATTTACAGGAATGCTTATGCCTTTCACCGGAGCTACCTCTTAATGGAAAGCCTGTTTAGGACTTTTGTCTATGAAGAAGGAGAGCCTCCTATATTCCACAATGGTCCTTGCAAGAACATATACTCTATGGAAGGACTGTTTCTCAGCTTCATGGAAACTGATACAAAATTCCGGACTTCGGATCCAGAAGAAGCTCATGTCTATTTCCTTCCTTTTAGTGTGGTGATGATCATAGAGTACCTCTTTCACCCAGTAATTCGAGACAAAGCTGTTTTGCAGCGCACCGTGGTTGATTATGTTCGTGTTATATCCAACAAGTACCCATTTTGGAATAGAAGCCTTGGGGCTGATCATGTAATGCTTTCTTGCCATGATTGGGGGCCAAGGGCGACATGGTACGTTCGACAGCTATACTTTGTTGCAATTCGTGTACTATGCAATGCGAACACCTCCGAGCATTTCAACCCTAAGAAAGATGCATCATTTCCCGAAATTAATCTTGTAACAGGTGAAATTACAGGTCTAATAGGAGGCTTGCCCCCTTCCAAGCGTTCTGTCCTAGCCTTCTTTGCAGGACGAATGCATGGTCGAATCAGACCATTGCTTTTCCAACACTGGAAAGAAAAAGATGAAAATTTACTGGTTTACGAAAAACTTCCCAAGAACGCTTCCTACCAAGACATGTTGAAGCAGAGCAAGTATTGCATATGCCCTAGCGGTCATGAAGTCGCTAGTCCAAGGATTGTAGAGGCAATTTACGCAGAGTGCGTTCCAGTTTTGATTTCACAGCATTATGTTCTGCCGTTCAGTGATGTTCTAGATTGGGAGTCTTTCTCTATTCAAGTATCTGTGAGTGAAATACCACAACTCAAGGAAATCTTAATGAGGATTCCTGAAGAGAAGTATAGAAGAATGCAGGAAAGAGTGAAACAAGTGCAAATGCATTTTGTAGTGAATAATCCCCCCAAGAGATATGATGTTTTTCATATGATAATTCATTCAATCTGGCTTAGGAGACTCAATGTACGCATTTATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

466

Amino Acids

53.98

Weight (kDa)

9.08

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 78 - 357 6.3e-58 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07620
fragaria_vesca FvH4_6g40270 FvH4_6g40270
malus_domestica MD17G1120500.v1.1
prunus_persica Prupe.3G193400_v2.0.a1
pyrus_communis pycom17g11120
rosa_chinensis RchiOBHm_Chr2g0155401
rosa_laevigata RLG00000020836
rosa_multiflora Rmu_sc0012066.1_g000012
rosa_roxburghii Rroxscaffold_2G00093770
rosa_rugosa Rorug02G0446800 Rorug02G0446900 Rorug02G0447000
rosa_samantha Rh2AG513200 Rh2BG523800 Rh2CG498200 Rh2DG533500
rosa_wichuraiana Rw2G042170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 528
AciI CCGC 1 cut(s) 1074
AclWI GGATC 2 cut(s) 533, 546
AcsI RAATTY 2 cut(s) 524, 991
AcuI CTGAAG 1 cut(s) 1272
AfaI GTAC 7 cut(s) 45, 136, 596, 677, 755, 789, 1383
AfiI CCNNNNNNNGG 4 cut(s) 384, 400, 535, 733
AflIII ACRYGT 1 cut(s) 1038
AgsI TTSAA 7 cut(s) 172, 217, 329, 820, 1045, 1199, 1359
AhlI ACTAGT 2 cut(s) 46, 131
AjnI CCWGG 1 cut(s) 246
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 9 cut(s) 99, 163, 278, 390, 504, 551, 626, 766, 1395
AluI AGCT 9 cut(s) 99, 163, 278, 390, 504, 551, 626, 766, 1395
Alw26I GTCTC 5 cut(s) 79, 162, 216, 612, 1366
AlwI GGATC 2 cut(s) 533, 546
Aor13HI TCCGGA 1 cut(s) 528
AoxI GGCC 2 cut(s) 261, 737
ApeKI GCWGC 1 cut(s) 634
ApoI RAATTY 2 cut(s) 524, 991
ArsI GACNNNNNNTTYG 2 cut(s) 928, 960
AseI ATTAAT 1 cut(s) 852
Asp700I GAANNNNTTC 2 cut(s) 112, 1011
AspLEI GCGC 1 cut(s) 639
AspS9I GGNCC 2 cut(s) 461, 737
AsuHPI GGTGA 4 cut(s) 374, 592, 596, 878
AvaII GGWCC 1 cut(s) 461
BamHI GGATCC 1 cut(s) 538
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 646
BceAI ACGGC 1 cut(s) 1144
BciT130I CCWGG 1 cut(s) 248
BclI TGATCA 2 cut(s) 585, 706
BcoDI GTCTC 5 cut(s) 79, 162, 216, 612, 1366
BcuI ACTAGT 2 cut(s) 46, 131
BfaI CTAG 9 cut(s) 47, 132, 138, 201, 279, 917, 1071, 1089, 1175
BfmI CTRYAG 1 cut(s) 69
BisI GCNGC 1 cut(s) 635
BlsI GCNGC 1 cut(s) 636
BmcAI AGTACT 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 461
BmgT120I GGNCC 2 cut(s) 461, 737
BmiI GGNNCC 2 cut(s) 540, 738
BmrFI CCNGG 1 cut(s) 248
BmrI ACTGGG 1 cut(s) 602
BmsI GCATC 3 cut(s) 322, 823, 845
BmuI ACTGGG 1 cut(s) 602
BoxI GACNNNNGTC 1 cut(s) 422
BpiI GAAGAC 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 1175, 1207
BpmI CTGGAG 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 1367
BpuEI CTTGAG 1 cut(s) 1211
BsaJI CCNNGG 4 cut(s) 642, 697, 740, 1094
BsaWI WCCGGW 2 cut(s) 384, 528
Bsc4I CCNNNNNNNGG 4 cut(s) 384, 400, 535, 733
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 5 cut(s) 84, 608, 977, 1002, 1130
Bse3DI GCAATG 3 cut(s) 60, 802, 956
BseAI TCCGGA 1 cut(s) 528
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 4 cut(s) 642, 697, 740, 1094
BseLI CCNNNNNNNGG 4 cut(s) 384, 400, 535, 733
BseMI GCAATG 3 cut(s) 60, 802, 956
BseMII CTCAG 4 cut(s) 144, 173, 178, 514
BseNI ACTGG 5 cut(s) 84, 608, 977, 1002, 1130
BseXI GCAGC 1 cut(s) 646
BshFI GGCC 2 cut(s) 263, 739
BsiSI CCGG 3 cut(s) 264, 385, 529
BslI CCNNNNNNNGG 4 cut(s) 384, 400, 535, 733
BsmAI GTCTC 5 cut(s) 79, 162, 216, 612, 1366
BsmI GAATGC 3 cut(s) 373, 942, 1275
BsnI GGCC 2 cut(s) 263, 739
Bsp13I TCCGGA 1 cut(s) 528
Bsp143I GATC 3 cut(s) 538, 585, 706
BspACI CCGC 1 cut(s) 1074
BspANI GGCC 2 cut(s) 263, 739
BspCNI CTCAG 4 cut(s) 145, 172, 177, 513
BspEI TCCGGA 1 cut(s) 528
BspHI TCATGA 1 cut(s) 1078
BspLI GGNNCC 2 cut(s) 540, 738
BspPI GGATC 2 cut(s) 533, 546
BsrDI GCAATG 3 cut(s) 60, 802, 956
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 5 cut(s) 84, 608, 977, 1002, 1130
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 642, 697, 740, 1094
BssMI GATC 3 cut(s) 538, 585, 706
BssT1I CCWWGG 3 cut(s) 697, 740, 1094
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 2 cut(s) 495, 643
Bst6I CTCTTC 1 cut(s) 1248
BstAPI GCANNNNNTGC 1 cut(s) 1059
BstC8I GCNNGC 1 cut(s) 893
BstDEI CTNAG 6 cut(s) 153, 159, 164, 500, 825, 1367
BstDSI CCRYGG 1 cut(s) 642
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 3 cut(s) 541, 588, 709
BstMAI GTCTC 5 cut(s) 79, 162, 216, 612, 1366
BstMBI GATC 3 cut(s) 538, 585, 706
BstMWI GCNNNNNNNGC 6 cut(s) 65, 269, 926, 1059, 1115, 1392
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 1042
BstPAI GACNNNNGTC 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 646
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 2 cut(s) 263, 739
BtgI CCRYGG 1 cut(s) 642
BtsIMutI CAGTG 3 cut(s) 77, 970, 1171
Cac8I GCNNGC 1 cut(s) 893
CciI TCATGA 1 cut(s) 1078
CfoI GCGC 1 cut(s) 639
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 461, 737
Csp6I GTAC 7 cut(s) 44, 135, 595, 676, 754, 788, 1382
CviAII CATG 8 cut(s) 508, 554, 710, 728, 750, 941, 1039, 1079
CviQI GTAC 7 cut(s) 44, 135, 595, 676, 754, 788, 1382
DdeI CTNAG 6 cut(s) 153, 159, 164, 500, 825, 1367
DpnI GATC 3 cut(s) 540, 587, 708
DpnII GATC 3 cut(s) 538, 585, 706
Eam1104I CTCTTC 1 cut(s) 1248
EarI CTCTTC 1 cut(s) 1248
Eco130I CCWWGG 3 cut(s) 697, 740, 1094
Eco47I GGWCC 1 cut(s) 461
Eco57I CTGAAG 1 cut(s) 1272
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 3 cut(s) 697, 740, 1094
EcoT22I ATGCAT 3 cut(s) 838, 942, 1302
ErhI CCWWGG 3 cut(s) 697, 740, 1094
FaeI CATG 8 cut(s) 511, 557, 713, 731, 753, 944, 1042, 1082
FalI AAGNNNNNCTT 6 cut(s) 100, 132, 197, 229, 1220, 1252
FatI CATG 8 cut(s) 507, 553, 709, 727, 749, 940, 1038, 1078
FauNDI CATATG 2 cut(s) 1064, 1344
FbaI TGATCA 2 cut(s) 585, 706
Fnu4HI GCNGC 1 cut(s) 635
Fsp4HI GCNGC 1 cut(s) 635
FspBI CTAG 9 cut(s) 47, 132, 138, 201, 279, 917, 1071, 1089, 1175
GlaI GCGC 1 cut(s) 638
GluI GCNGC 1 cut(s) 635
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 2 cut(s) 263, 739
HapII CCGG 3 cut(s) 264, 385, 529
HhaI GCGC 1 cut(s) 639
Hin1II CATG 8 cut(s) 511, 557, 713, 731, 753, 944, 1042, 1082
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HinfI GANTC 7 cut(s) 155, 168, 319, 948, 1184, 1246, 1374
HpaII CCGG 3 cut(s) 264, 385, 529
HphI GGTGA 4 cut(s) 374, 592, 596, 878
Hpy166II GTNNAC 4 cut(s) 16, 244, 788, 1003
Hpy188I TCNGA 6 cut(s) 154, 167, 348, 538, 811, 953
Hpy8I GTNNAC 4 cut(s) 16, 244, 788, 1003
HpyAV CCTTC 7 cut(s) 102, 226, 428, 482, 575, 909, 931
HpyCH4III ACNGT 2 cut(s) 495, 643
HpyCH4IV ACGT 1 cut(s) 756
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 269, 926, 1059, 1115, 1392
HpyF3I CTNAG 6 cut(s) 153, 159, 164, 500, 825, 1367
HpySE526I ACGT 1 cut(s) 756
Hsp92II CATG 8 cut(s) 511, 557, 713, 731, 753, 944, 1042, 1082
HspAI GCGC 1 cut(s) 637
Kpn2I TCCGGA 1 cut(s) 528
Ksp22I TGATCA 2 cut(s) 585, 706
Kzo9I GATC 3 cut(s) 538, 585, 706
LmnI GCTCC 1 cut(s) 387
Lsp1109I GCAGC 1 cut(s) 646
LweI GCATC 3 cut(s) 322, 823, 845
MaeI CTAG 9 cut(s) 47, 132, 138, 201, 279, 917, 1071, 1089, 1175
MaeII ACGT 1 cut(s) 756
MaeIII GTNAC 3 cut(s) 85, 127, 859
MalI GATC 3 cut(s) 540, 587, 708
MboI GATC 3 cut(s) 538, 585, 706
MboII GAAGA 7 cut(s) 33, 105, 341, 443, 557, 1265, 1278
MflI RGATCY 1 cut(s) 538
MluCI AATT 8 cut(s) 524, 612, 780, 849, 870, 991, 1110, 1350
MlyI GAGTC 4 cut(s) 164, 328, 1193, 1368
MmeI TCCRAC 2 cut(s) 693, 991
Mph1103I ATGCAT 3 cut(s) 838, 942, 1302
MroI TCCGGA 1 cut(s) 528
MroXI GAANNNNTTC 2 cut(s) 112, 1011
MseI TTAA 4 cut(s) 26, 398, 852, 1238
MspI CCGG 3 cut(s) 264, 385, 529
MspR9I CCNGG 1 cut(s) 248
Mva1269I GAATGC 3 cut(s) 373, 942, 1275
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 6 cut(s) 65, 269, 926, 1059, 1115, 1392
NdeI CATATG 2 cut(s) 1064, 1344
NdeII GATC 3 cut(s) 538, 585, 706
NlaIII CATG 8 cut(s) 511, 557, 713, 731, 753, 944, 1042, 1082
NlaIV GGNNCC 2 cut(s) 540, 738
NsiI ATGCAT 3 cut(s) 838, 942, 1302
NspI RCATGY 1 cut(s) 1042
PagI TCATGA 1 cut(s) 1078
PciI ACATGT 1 cut(s) 1038
PcsI WCGNNNNNNNCGW 1 cut(s) 1122
PctI GAATGC 3 cut(s) 373, 942, 1275
PdmI GAANNNNTTC 2 cut(s) 112, 1011
PfeI GAWTC 3 cut(s) 168, 948, 1246
PkrI GCNGC 1 cut(s) 636
PleI GAGTC 4 cut(s) 163, 327, 1192, 1368
PpsI GAGTC 4 cut(s) 163, 327, 1192, 1368
PscI ACATGT 1 cut(s) 1038
PshAI GACNNNNGTC 1 cut(s) 422
PshBI ATTAAT 1 cut(s) 852
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 540, 738
PspPI GGNCC 2 cut(s) 461, 737
PsrI GAACNNNNNNTAC 2 cut(s) 1013, 1045
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 7 cut(s) 45, 136, 596, 677, 755, 789, 1383
RsaNI GTAC 7 cut(s) 44, 135, 595, 676, 754, 788, 1382
SaqAI TTAA 4 cut(s) 26, 398, 852, 1238
SatI GCNGC 1 cut(s) 635
Sau3AI GATC 3 cut(s) 538, 585, 706
Sau96I GGNCC 2 cut(s) 461, 737
ScaI AGTACT 1 cut(s) 136
SchI GAGTC 4 cut(s) 164, 328, 1193, 1368
ScrFI CCNGG 1 cut(s) 248
SfaNI GCATC 3 cut(s) 322, 823, 845
SfcI CTRYAG 1 cut(s) 69
SinI GGWCC 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 1226
SmoI CTYRAG 1 cut(s) 1226
SpeI ACTAGT 2 cut(s) 46, 131
Sse9I AATT 8 cut(s) 524, 612, 780, 849, 870, 991, 1110, 1350
SsiI CCGC 1 cut(s) 1074
SspI AATATT 1 cut(s) 178
SspMI CTAG 9 cut(s) 47, 132, 138, 201, 279, 917, 1071, 1089, 1175
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 3 cut(s) 697, 740, 1094
TaaI ACNGT 2 cut(s) 495, 643
TaiI ACGT 1 cut(s) 759
TaqI TCGA 3 cut(s) 616, 760, 946
TasI AATT 8 cut(s) 524, 612, 780, 849, 870, 991, 1110, 1350
TatI WGTACW 3 cut(s) 43, 134, 787
TfiI GAWTC 3 cut(s) 168, 948, 1246
Tru1I TTAA 4 cut(s) 26, 398, 852, 1238
Tru9I TTAA 4 cut(s) 26, 398, 852, 1238
TscAI CASTG 3 cut(s) 84, 977, 1171
TseI GCWGC 1 cut(s) 634
TspDTI ATGAA 6 cut(s) 444, 496, 1002, 1095, 1331, 1343
TspRI CASTG 3 cut(s) 84, 977, 1171
VpaK11BI GGWCC 1 cut(s) 461
VspI ATTAAT 1 cut(s) 852
XapI RAATTY 2 cut(s) 524, 991
XbaI TCTAGA 1 cut(s) 1174
XceI RCATGY 1 cut(s) 1042
XcmI CCANNNNNNNNNTGG 1 cut(s) 747
XmnI GAANNNNTTC 2 cut(s) 112, 1011
XspI CTAG 9 cut(s) 47, 132, 138, 201, 279, 917, 1071, 1089, 1175
ZrmI AGTACT 1 cut(s) 136
Zsp2I ATGCAT 3 cut(s) 838, 942, 1302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.