Rh2BG523800

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012729
Physical Location & Seq
Forward (+)
73386213 .. 73386978
766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG523800.1

Sequence Viewer

Length: 567 bp
ATGAGTTCTGATTCTCAGTTCAGCTTCAACAATATTTCTGGACACGGGAGTTTCACAGGCAAGTCTGTTTCTAAACGAGATAATGATAAAAGAGATGTAAACCTGGAGAGGCTTGAGGCCGGTCTTGCTACTGCTAGAGAGTTGATAAGGGAAGCAACAAAGCTAAACCAAACAAGTACACTTGAAGATGCCGATTATGTTCCACACGGTGATATTTACAGGAACGCCTATGCCTTTCACCGGAGCTACCTCTTAATGGAAAGCCTTTTTAAGATTTTTGTCTATGAAGAGGGAGAGCCTCCAATATTCCACAATGGTCCTTGCAAGAACATATACTCTATGGAAGGACTCTTTCTCAGCTTCATGGGAACTGATACCAAATTCCAAACTTTGGATCCAGAAAAAGCGCATGTCTATTTCCTTCCTTTTAGTGTGGTGAAGATCATTGAGTACCTCTTTCATCCAATTATTCGAGACAAAGCTGTTTTACAACGCACCGTGGTTGATTATGTTCGAGTCATATCCAACAAGTACCCATTTTGGAATAGAAGCCTAGCTTGGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

188

Amino Acids

21.74

Weight (kDa)

6.59

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 87 - 184 9e-09 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07620
fragaria_vesca FvH4_6g40270 FvH4_6g40270
malus_domestica MD17G1120500.v1.1
prunus_persica Prupe.3G193400_v2.0.a1
pyrus_communis pycom17g11120
rosa_chinensis RchiOBHm_Chr2g0155401
rosa_laevigata RLG00000020836
rosa_multiflora Rmu_sc0012066.1_g000012
rosa_roxburghii Rroxscaffold_2G00093770
rosa_rugosa Rorug02G0446800 Rorug02G0446900 Rorug02G0447000
rosa_samantha Rh2AG513200 Rh2BG523800 Rh2CG498200 Rh2DG533500
rosa_wichuraiana Rw2G042170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 391
AclWI GGATC 2 cut(s) 389, 402
AcsI RAATTY 1 cut(s) 380
AdeI CACNNNGTG 1 cut(s) 209
AfaI GTAC 3 cut(s) 178, 452, 533
AfiI CCNNNNNNNGG 4 cut(s) 240, 256, 391, 559
AgsI TTSAA 2 cut(s) 28, 185
AjnI CCWGG 1 cut(s) 102
AjuI GAANNNNNNNTTGG 1 cut(s) 541
AluBI AGCT 6 cut(s) 24, 163, 246, 360, 482, 557
AluI AGCT 6 cut(s) 24, 163, 246, 360, 482, 557
Alw26I GTCTC 1 cut(s) 468
AlwI GGATC 2 cut(s) 389, 402
AoxI GGCC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 380
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 221, 230, 448
AvaII GGWCC 1 cut(s) 317
BamHI GGATCC 1 cut(s) 394
BciT130I CCWGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 468
BfaI CTAG 2 cut(s) 135, 554
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 178
BpmI CTGGAG 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 498
BsaWI WCCGGW 1 cut(s) 240
Bsc4I CCNNNNNNNGG 4 cut(s) 240, 256, 391, 559
Bse118I RCCGGY 1 cut(s) 119
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 4 cut(s) 240, 256, 391, 559
BseMII CTCAG 2 cut(s) 29, 370
BshFI GGCC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 120, 241
BslI CCNNNNNNNGG 4 cut(s) 240, 256, 391, 559
BsmAI GTCTC 1 cut(s) 468
BsnI GGCC 1 cut(s) 119
Bsp143I GATC 2 cut(s) 394, 441
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 2 cut(s) 28, 369
BspLI GGNNCC 1 cut(s) 396
BspPI GGATC 2 cut(s) 389, 402
BsrFI RCCGGY 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 2 cut(s) 394, 441
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 209, 499
Bst6I CTCTTC 1 cut(s) 282
BstDEI CTNAG 2 cut(s) 15, 356
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 1 cut(s) 460
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 2 cut(s) 397, 444
BstMAI GTCTC 1 cut(s) 468
BstMBI GATC 2 cut(s) 394, 441
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BsuRI GGCC 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 498
BtsCI GGATG 1 cut(s) 460
CfoI GCGC 1 cut(s) 409
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 317
Csp6I GTAC 3 cut(s) 177, 451, 532
CviAII CATG 2 cut(s) 364, 410
CviQI GTAC 3 cut(s) 177, 451, 532
DdeI CTNAG 2 cut(s) 15, 356
DpnI GATC 2 cut(s) 396, 443
DpnII GATC 2 cut(s) 394, 441
DraIII CACNNNGTG 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 102
FaeI CATG 2 cut(s) 367, 413
FalI AAGNNNNNCTT 1 cut(s) 541
FatI CATG 2 cut(s) 363, 409
FokI GGATG 1 cut(s) 447
FspBI CTAG 2 cut(s) 135, 554
GlaI GCGC 1 cut(s) 408
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 1 cut(s) 119
HapII CCGG 2 cut(s) 120, 241
HhaI GCGC 1 cut(s) 409
Hin1II CATG 2 cut(s) 367, 413
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HinfI GANTC 3 cut(s) 11, 348, 516
HpaII CCGG 2 cut(s) 120, 241
HphI GGTGA 3 cut(s) 221, 230, 448
Hpy166II GTNNAC 2 cut(s) 100, 179
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 3 cut(s) 39, 398, 473
Hpy8I GTNNAC 2 cut(s) 100, 179
HpyAV CCTTC 2 cut(s) 338, 431
HpyCH4III ACNGT 2 cut(s) 209, 499
HpyCH4V TGCA 1 cut(s) 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 2 cut(s) 15, 356
Hsp92II CATG 2 cut(s) 367, 413
HspAI GCGC 1 cut(s) 407
Kzo9I GATC 2 cut(s) 394, 441
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 8 cut(s) 24, 42, 89, 116, 133, 205, 254, 411
LweI GCATC 1 cut(s) 178
MaeI CTAG 2 cut(s) 135, 554
MalI GATC 2 cut(s) 396, 443
MboI GATC 2 cut(s) 394, 441
MboII GAAGA 3 cut(s) 197, 299, 451
MflI RGATCY 1 cut(s) 394
MluCI AATT 2 cut(s) 380, 465
MlyI GAGTC 2 cut(s) 342, 525
MmeI TCCRAC 1 cut(s) 549
MnlI CCTC 6 cut(s) 102, 109, 260, 283, 309, 464
MseI TTAA 2 cut(s) 254, 270
MspI CCGG 2 cut(s) 120, 241
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 2 cut(s) 394, 441
NlaIII CATG 2 cut(s) 367, 413
NlaIV GGNNCC 1 cut(s) 396
NspI RCATGY 1 cut(s) 413
PfeI GAWTC 1 cut(s) 11
PflMI CCANNNNNTGG 1 cut(s) 391
PleI GAGTC 2 cut(s) 342, 524
PpsI GAGTC 2 cut(s) 342, 524
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 1 cut(s) 317
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 3 cut(s) 178, 452, 533
RsaNI GTAC 3 cut(s) 177, 451, 532
SaqAI TTAA 2 cut(s) 254, 270
Sau3AI GATC 2 cut(s) 394, 441
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 2 cut(s) 342, 525
ScrFI CCNGG 1 cut(s) 104
SetI ASST 9 cut(s) 26, 105, 165, 248, 252, 362, 456, 484, 559
SfaNI GCATC 1 cut(s) 178
SinI GGWCC 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 2 cut(s) 380, 465
SspI AATATT 2 cut(s) 34, 306
SspMI CTAG 2 cut(s) 135, 554
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 209, 499
TaqI TCGA 2 cut(s) 472, 514
TasI AATT 2 cut(s) 380, 465
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 2 cut(s) 254, 270
Tru9I TTAA 2 cut(s) 254, 270
TspDTI ATGAA 3 cut(s) 300, 352, 449
Van91I CCANNNNNTGG 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 1 cut(s) 380
XceI RCATGY 1 cut(s) 413
XspI CTAG 2 cut(s) 135, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.