MD17G1120500.v1.1

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012729
Physical Location & Seq
Reverse (-)
10529509 .. 10531415
1907 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1120500.v1.1.491

Sequence Viewer

Length: 1431 bp
ATGAAGCAGGTTTACAGAAGATATCAAAATGCTATTGTGTTTGCTATGGCTTCCTTTGCTATAGTTTATATGGTTGTGAGTCTTGTGACAAATGGTTCGAAAGGAACGTCTCAATTTCCATGGTTGGGTACCGGCGTAGATATGATTTCTGATTCCACATTCAGAATCAACTATATTTCATCATACAAGGATGCAACAAGGATGAAGGCATTGCCTGATCTTGGAAGGGGATACATTGGCGATTCTGTTCCGCAAAGGGATTGGCAGAAGGGAGATGAAAACCTGAAGAAACTTGAAGCTGGTCTTGCTGCTGCTAGAGCATTGATTGGGGAAGCAATAAAAAATCTTAACCATACAACACCTCTTAAAGATGCAGATTATATACCAAAAGGCGATATTTACAGGAATGCGTATGCCTTTCACCGGAGCTACCTCTTAATGGAAAAAATGTTTAAAATATATGTCTACGAAGAGGGAGAGCTGCCTATATTTCATAACGGTCCTTGCAAAAACATTTACTCTATGGAGGGACTCTTCCTTAGCTTCATGGAAACTGATACCAAGTTCCGGACTCGAGAGCCTGAAAATGCTCACGTCTATTTTCTGCCATTCAGTGTTGTGATGATCGTCGAGTATTTGTTTCACCCGATTATTCGTGACAAAGCTGTTCTTGAGCGCACTGTGGTTGATTACGTTCGTATCATCTCTAATAGGTATCCATACTGGAACAGAAGCCTTGGAGCTGATCATGTCATGCTTTCTTGCCATGATTGGGGGCCAAGGGCTACATGGTATGTTAAACAACTGTACTTCGTTGCCATCCGTGTACTATGCAACGCCAATACATCCGAGCACTTTAACCCTAAGAAAGATGCATCATTTCCTGAAATCAATCTGGAAACTGGTGAAATAACAGGTCTAATTGGAGGCTTGCATCCGTCCAAACGTACAATCCTAGCATTTTTTGCAGGACGAATGCACGGTCGAATTAGGCCATTTCTTTTCGAGCATTGGAAAGGAAAAGACAGAGATTTACTGGTCTATGAAAAACTCCCTGAAGAGCTTTCATACCATGACATGCTGAAGAAAAGCAAGTATTGCATTTGCCCTAGTGGACATGAAGTTGCCAGCCCAAGAATTGTGGAGGCAATTTATGCAGATTGTGTTCCAGTTTTGATATCACAACACTATGTGCTGCCTTTCAGTGATGTGCTTAACTGGGACTCGTTTTCTGTTCAAGTTTCAGTGAGTGAAATTCCAAAACTTAAAGAAATCTTAATGGGAATACCTGAAGAGCAATATCGAAGAATGCAGGAAAGAGTGAAGCAGGTGCAAAGGCATTTTGTAGTGAATAATCCACCCAAGAGATATGATGTTTTCCATATGATTATTCATTCAATCTGGCTTAGAAGATTGAATGTACAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

477

Amino Acids

55.31

Weight (kDa)

8.99

Isoelectric Point (pI)

32.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 148 - 427 1.3e-55 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07620
fragaria_vesca FvH4_6g40270 FvH4_6g40270
malus_domestica MD17G1120500.v1.1
prunus_persica Prupe.3G193400_v2.0.a1
pyrus_communis pycom17g11120
rosa_chinensis RchiOBHm_Chr2g0155401
rosa_laevigata RLG00000020836
rosa_multiflora Rmu_sc0012066.1_g000012
rosa_roxburghii Rroxscaffold_2G00093770
rosa_rugosa Rorug02G0446800 Rorug02G0446900 Rorug02G0447000
rosa_samantha Rh2AG513200 Rh2BG523800 Rh2CG498200 Rh2DG533500
rosa_wichuraiana Rw2G042170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1318
Acc36I ACCTGC 1 cut(s) 1318
Acc65I GGTACC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 128
AccI GTMKAC 1 cut(s) 465
AccIII TCCGGA 1 cut(s) 567
AciI CCGC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 1254
AcuI CTGAAG 4 cut(s) 305, 1077, 1103, 1311
AdeI CACNNNGTG 1 cut(s) 1192
AfaI GTAC 5 cut(s) 130, 809, 828, 949, 1422
AfiI CCNNNNNNNGG 6 cut(s) 125, 221, 423, 439, 567, 772
AgsI TTSAA 4 cut(s) 296, 1238, 1398, 1417
AjiI CACGTC 1 cut(s) 595
AluBI AGCT 7 cut(s) 299, 429, 481, 543, 665, 743, 1063
AluI AGCT 7 cut(s) 299, 429, 481, 543, 665, 743, 1063
Alw21I GWGCWC 1 cut(s) 855
Alw26I GTCTC 1 cut(s) 114
Ama87I CYCGRG 1 cut(s) 573
Aor13HI TCCGGA 1 cut(s) 567
AoxI GGCC 2 cut(s) 776, 992
ApeKI GCWGC 4 cut(s) 308, 311, 481, 1195
ApoI RAATTY 1 cut(s) 1254
ArsI GACNNNNNNTTYG 6 cut(s) 79, 92, 111, 124, 967, 999
Asp718I GGTACC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 678
AspS9I GGNCC 2 cut(s) 500, 776
AsuHPI GGTGA 3 cut(s) 413, 635, 917
AsuII TTCGAA 1 cut(s) 98
AvaI CYCGRG 1 cut(s) 573
AvaII GGWCC 1 cut(s) 500
BaeI ACNNNNGTAYC 4 cut(s) 120, 153, 682, 715
BanI GGYRCC 1 cut(s) 128
BarI GAAGNNNNNNTAC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 855
BbvI GCAGC 4 cut(s) 295, 298, 468, 1182
BccI CCATC 1 cut(s) 827
BciVI GTATCC 2 cut(s) 224, 726
BclI TGATCA 1 cut(s) 745
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 3 cut(s) 315, 956, 1110
BfmI CTRYAG 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 1318
BfuI GTATCC 2 cut(s) 224, 726
BisI GCNGC 4 cut(s) 309, 312, 482, 1196
BlsI GCNGC 4 cut(s) 310, 313, 483, 1197
Bme18I GGWCC 1 cut(s) 500
BmeT110I CYCGRG 1 cut(s) 573
BmgBI CACGTC 1 cut(s) 595
BmgT120I GGNCC 2 cut(s) 500, 776
BmiI GGNNCC 2 cut(s) 130, 777
BmrI ACTGGG 1 cut(s) 1228
BmsI GCATC 5 cut(s) 181, 361, 862, 884, 943
BmuI ACTGGG 1 cut(s) 1228
Bpu10I CCTNAGC 1 cut(s) 539
Bpu14I TTCGAA 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 692
BsaJI CCNNGG 3 cut(s) 119, 736, 779
BsaWI WCCGGW 2 cut(s) 423, 567
Bsc4I CCNNNNNNNGG 6 cut(s) 125, 221, 423, 439, 567, 772
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 5 cut(s) 728, 907, 1041, 1169, 1223
Bse3DI GCAATG 1 cut(s) 209
BseAI TCCGGA 1 cut(s) 567
BseDI CCNNGG 3 cut(s) 119, 736, 779
BseGI GGATG 5 cut(s) 196, 207, 819, 845, 934
BseLI CCNNNNNNNGG 6 cut(s) 125, 221, 423, 439, 567, 772
BseMI GCAATG 1 cut(s) 209
BseNI ACTGG 5 cut(s) 728, 907, 1041, 1169, 1223
BseXI GCAGC 4 cut(s) 295, 298, 468, 1182
Bsh1285I CGRYCG 1 cut(s) 985
BshFI GGCC 2 cut(s) 778, 994
BshNI GGYRCC 1 cut(s) 128
BsiEI CGRYCG 1 cut(s) 985
BsiHKAI GWGCWC 1 cut(s) 855
BsiHKCI CYCGRG 1 cut(s) 573
BsiSI CCGG 3 cut(s) 132, 424, 568
BslFI GGGAC 2 cut(s) 543, 1235
BslI CCNNNNNNNGG 6 cut(s) 125, 221, 423, 439, 567, 772
BsmAI GTCTC 1 cut(s) 114
BsmBI CGTCTC 1 cut(s) 114
BsmFI GGGAC 2 cut(s) 543, 1235
BsmI GAATGC 3 cut(s) 412, 981, 1314
BsnI GGCC 2 cut(s) 778, 994
BsoBI CYCGRG 1 cut(s) 573
Bsp119I TTCGAA 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 855
Bsp13I TCCGGA 1 cut(s) 567
Bsp1407I TGTACA 1 cut(s) 1420
Bsp143I GATC 3 cut(s) 217, 624, 745
Bsp19I CCATGG 1 cut(s) 119
BspACI CCGC 1 cut(s) 251
BspANI GGCC 2 cut(s) 778, 994
BspEI TCCGGA 1 cut(s) 567
BspLI GGNNCC 2 cut(s) 130, 777
BspMI ACCTGC 1 cut(s) 1318
BspQI GCTCTTC 2 cut(s) 1053, 1287
BspT104I TTCGAA 1 cut(s) 98
BspT107I GGYRCC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 209
BsrFI RCCGGY 1 cut(s) 131
BsrGI TGTACA 1 cut(s) 1420
BsrI ACTGG 5 cut(s) 728, 907, 1041, 1169, 1223
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 3 cut(s) 119, 736, 779
BssMI GATC 3 cut(s) 217, 624, 745
BssT1I CCWWGG 3 cut(s) 119, 736, 779
Bst4CI ACNGT 4 cut(s) 500, 682, 807, 983
Bst6I CTCTTC 4 cut(s) 465, 539, 1053, 1287
BstAPI GCANNNNNTGC 3 cut(s) 965, 1098, 1154
BstAUI TGTACA 1 cut(s) 1420
BstBI TTCGAA 1 cut(s) 98
BstC8I GCNNGC 2 cut(s) 932, 1129
BstDEI CTNAG 3 cut(s) 539, 864, 1406
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 5 cut(s) 196, 207, 819, 845, 934
BstHHI GCGC 1 cut(s) 678
BstKTI GATC 3 cut(s) 220, 627, 748
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 3 cut(s) 217, 624, 745
BstMCI CGRYCG 1 cut(s) 985
BstMWI GCNNNNNNNGC 6 cut(s) 56, 305, 317, 965, 1098, 1154
BstNSI RCATGY 1 cut(s) 1081
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 4 cut(s) 295, 298, 468, 1182
BsuI GTATCC 2 cut(s) 224, 726
BsuRI GGCC 2 cut(s) 778, 994
BtgI CCRYGG 1 cut(s) 119
BtrI CACGTC 1 cut(s) 595
BtsCI GGATG 5 cut(s) 196, 207, 819, 845, 934
BtsIMutI CAGTG 4 cut(s) 619, 678, 1210, 1251
BveI ACCTGC 1 cut(s) 1318
Cac8I GCNNGC 2 cut(s) 932, 1129
CfoI GCGC 1 cut(s) 678
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 500, 776
Csp6I GTAC 5 cut(s) 129, 808, 827, 948, 1421
CspCI CAANNNNNGTGG 2 cut(s) 1122, 1157
CviAII CATG 9 cut(s) 120, 547, 749, 754, 767, 789, 1073, 1078, 1118
CviQI GTAC 5 cut(s) 129, 808, 827, 948, 1421
DdeI CTNAG 3 cut(s) 539, 864, 1406
DpnI GATC 3 cut(s) 219, 626, 747
DpnII GATC 3 cut(s) 217, 624, 745
DraI TTTAAA 1 cut(s) 454
DraIII CACNNNGTG 1 cut(s) 1192
Eam1104I CTCTTC 4 cut(s) 465, 539, 1053, 1287
EarI CTCTTC 4 cut(s) 465, 539, 1053, 1287
Eco130I CCWWGG 3 cut(s) 119, 736, 779
Eco32I GATATC 2 cut(s) 23, 1179
Eco47I GGWCC 1 cut(s) 500
Eco57I CTGAAG 4 cut(s) 305, 1077, 1103, 1311
Eco88I CYCGRG 1 cut(s) 573
EcoRV GATATC 2 cut(s) 23, 1179
EcoT14I CCWWGG 3 cut(s) 119, 736, 779
EcoT22I ATGCAT 1 cut(s) 877
ErhI CCWWGG 3 cut(s) 119, 736, 779
Esp3I CGTCTC 1 cut(s) 114
FaeI CATG 9 cut(s) 123, 550, 752, 757, 770, 792, 1076, 1081, 1121
FalI AAGNNNNNCTT 4 cut(s) 288, 320, 654, 686
FaqI GGGAC 2 cut(s) 543, 1235
FatI CATG 9 cut(s) 119, 546, 748, 753, 766, 788, 1072, 1077, 1117
FauNDI CATATG 1 cut(s) 1383
FbaI TGATCA 1 cut(s) 745
FblI GTMKAC 1 cut(s) 465
Fnu4HI GCNGC 4 cut(s) 309, 312, 482, 1196
FokI GGATG 5 cut(s) 203, 214, 806, 832, 921
Fsp4HI GCNGC 4 cut(s) 309, 312, 482, 1196
FspBI CTAG 3 cut(s) 315, 956, 1110
GlaI GCGC 1 cut(s) 677
GluI GCNGC 4 cut(s) 309, 312, 482, 1196
HaeIII GGCC 2 cut(s) 778, 994
HapII CCGG 3 cut(s) 132, 424, 568
HhaI GCGC 1 cut(s) 678
Hin1II CATG 9 cut(s) 123, 550, 752, 757, 770, 792, 1076, 1081, 1121
Hin6I GCGC 1 cut(s) 676
HinP1I GCGC 1 cut(s) 676
HinfI GANTC 7 cut(s) 79, 152, 165, 242, 531, 571, 1223
HpaII CCGG 3 cut(s) 132, 424, 568
HphI GGTGA 3 cut(s) 413, 635, 917
Hpy166II GTNNAC 4 cut(s) 13, 466, 827, 1115
Hpy188I TCNGA 3 cut(s) 151, 164, 850
Hpy188III TCNNGA 6 cut(s) 568, 575, 656, 671, 884, 896
Hpy8I GTNNAC 4 cut(s) 13, 466, 827, 1115
Hpy99I CGWCG 1 cut(s) 632
HpyAV CCTTC 3 cut(s) 199, 219, 262
HpyCH4III ACNGT 4 cut(s) 500, 682, 807, 983
HpyCH4IV ACGT 4 cut(s) 107, 594, 693, 946
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 305, 317, 965, 1098, 1154
HpyF3I CTNAG 3 cut(s) 539, 864, 1406
HpySE526I ACGT 4 cut(s) 107, 594, 693, 946
Hsp92II CATG 9 cut(s) 123, 550, 752, 757, 770, 792, 1076, 1081, 1121
HspAI GCGC 1 cut(s) 676
Kpn2I TCCGGA 1 cut(s) 567
KpnI GGTACC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 745
Kzo9I GATC 3 cut(s) 217, 624, 745
LguI GCTCTTC 2 cut(s) 1053, 1287
LmnI GCTCC 2 cut(s) 426, 740
Lsp1109I GCAGC 4 cut(s) 295, 298, 468, 1182
LweI GCATC 5 cut(s) 181, 361, 862, 884, 943
MaeI CTAG 3 cut(s) 315, 956, 1110
MaeII ACGT 4 cut(s) 107, 594, 693, 946
MaeIII GTNAC 2 cut(s) 85, 656
MalI GATC 3 cut(s) 219, 626, 747
MboI GATC 3 cut(s) 217, 624, 745
MboII GAAGA 9 cut(s) 30, 298, 482, 526, 1070, 1096, 1304, 1317, 1422
MhlI GDGCHC 1 cut(s) 855
MluCI AATT 6 cut(s) 113, 921, 987, 1137, 1149, 1254
MlyI GAGTC 4 cut(s) 88, 525, 565, 1217
MnlI CCTC 6 cut(s) 372, 443, 466, 520, 920, 1138
Mph1103I ATGCAT 1 cut(s) 877
MroI TCCGGA 1 cut(s) 567
MseI TTAA 9 cut(s) 348, 366, 437, 453, 798, 858, 1215, 1266, 1277
MspI CCGG 3 cut(s) 132, 424, 568
Mva1269I GAATGC 3 cut(s) 412, 981, 1314
MwoI GCNNNNNNNGC 6 cut(s) 56, 305, 317, 965, 1098, 1154
NcoI CCATGG 1 cut(s) 119
NdeI CATATG 1 cut(s) 1383
NdeII GATC 3 cut(s) 217, 624, 745
NlaIII CATG 9 cut(s) 123, 550, 752, 757, 770, 792, 1076, 1081, 1121
NlaIV GGNNCC 2 cut(s) 130, 777
NmuCI GTSAC 2 cut(s) 85, 656
NsiI ATGCAT 1 cut(s) 877
NspI RCATGY 1 cut(s) 1081
NspV TTCGAA 1 cut(s) 98
PaeR7I CTCGAG 1 cut(s) 573
PaqCI CACCTGC 1 cut(s) 1318
PciSI GCTCTTC 2 cut(s) 1053, 1287
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PctI GAATGC 3 cut(s) 412, 981, 1314
PfeI GAWTC 3 cut(s) 152, 165, 242
PkrI GCNGC 4 cut(s) 310, 313, 483, 1197
PleI GAGTC 4 cut(s) 87, 525, 565, 1217
PpsI GAGTC 4 cut(s) 87, 525, 565, 1217
PspN4I GGNNCC 2 cut(s) 130, 777
PspPI GGNCC 2 cut(s) 500, 776
RsaI GTAC 5 cut(s) 130, 809, 828, 949, 1422
RsaNI GTAC 5 cut(s) 129, 808, 827, 948, 1421
SapI GCTCTTC 2 cut(s) 1053, 1287
SaqAI TTAA 9 cut(s) 348, 366, 437, 453, 798, 858, 1215, 1266, 1277
SatI GCNGC 4 cut(s) 309, 312, 482, 1196
Sau3AI GATC 3 cut(s) 217, 624, 745
Sau96I GGNCC 2 cut(s) 500, 776
SchI GAGTC 4 cut(s) 88, 525, 565, 1217
SduI GDGCHC 1 cut(s) 855
SfaNI GCATC 5 cut(s) 181, 361, 862, 884, 943
SfcI CTRYAG 1 cut(s) 60
Sfr274I CTCGAG 1 cut(s) 573
SfuI TTCGAA 1 cut(s) 98
SinI GGWCC 1 cut(s) 500
SlaI CTCGAG 1 cut(s) 573
SmlI CTYRAG 2 cut(s) 573, 671
SmoI CTYRAG 2 cut(s) 573, 671
Sse9I AATT 6 cut(s) 113, 921, 987, 1137, 1149, 1254
SsiI CCGC 1 cut(s) 251
SspMI CTAG 3 cut(s) 315, 956, 1110
StyI CCWWGG 3 cut(s) 119, 736, 779
TaaI ACNGT 4 cut(s) 500, 682, 807, 983
TaiI ACGT 4 cut(s) 110, 597, 696, 949
TaqI TCGA 6 cut(s) 98, 574, 630, 985, 1005, 1303
TasI AATT 6 cut(s) 113, 921, 987, 1137, 1149, 1254
TatI WGTACW 3 cut(s) 807, 826, 1420
TfiI GAWTC 3 cut(s) 152, 165, 242
Tru1I TTAA 9 cut(s) 348, 366, 437, 453, 798, 858, 1215, 1266, 1277
Tru9I TTAA 9 cut(s) 348, 366, 437, 453, 798, 858, 1215, 1266, 1277
TscAI CASTG 4 cut(s) 619, 685, 1210, 1251
TseFI GTSAC 2 cut(s) 85, 656
TseI GCWGC 4 cut(s) 308, 311, 481, 1195
Tsp45I GTSAC 2 cut(s) 85, 656
TspGWI ACGGA 2 cut(s) 812, 927
TspRI CASTG 4 cut(s) 619, 685, 1210, 1251
VpaK11BI GGWCC 1 cut(s) 500
XapI RAATTY 1 cut(s) 1254
XceI RCATGY 1 cut(s) 1081
XcmI CCANNNNNNNNNTGG 1 cut(s) 786
XhoI CTCGAG 1 cut(s) 573
XmiI GTMKAC 1 cut(s) 465
XspI CTAG 3 cut(s) 315, 956, 1110
Zsp2I ATGCAT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.