Rorug02G0446800

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012729
Physical Location & Seq
Forward (+)
57331273 .. 57332300
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0446800.1

Sequence Viewer

Length: 381 bp
ATGCTCCAGCACGCCATTCGCCTCCTCAAGTCCCAGCTCCGCTCCGAGGTCCTCTCCCGCCACTCTGATTTCCTCTCTCAGCTCTCCTTCTTCCAGCACGCCGACCACGCCCTCTCCACCGTCCGATCCTCCGTCGACTCCCTCCGCCACACCCGATTCGAGCTCTCTGACCCCCTCCGCTCCATCAACGCCCTCACTCTTCAGCTCTCCAACCTCCACGCCACCTCCGAGCTCCTCCACTACACCCTCCAATCCCTTCGCCTCTCTAAGGACTCTACAACCTCGTCGTCGACCCCGGAAAGATCGATCTCACTAAGGCCGCCCATGGTTAAGGTCGAAAAGGACGATGGCGGGGCTTTTCAGGTTACTGATTGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

126

Amino Acids

14.34

Weight (kDa)

8.26

Isoelectric Point (pI)

62.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG5_N PF10392 2 - 90 2.7e-09 Conserved oligomeric Golgi complex subunit 5, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07620
fragaria_vesca FvH4_6g40270 FvH4_6g40270
malus_domestica MD17G1120500.v1.1
prunus_persica Prupe.3G193400_v2.0.a1
pyrus_communis pycom17g11120
rosa_chinensis RchiOBHm_Chr2g0155401
rosa_laevigata RLG00000020836
rosa_multiflora Rmu_sc0012066.1_g000012
rosa_roxburghii Rroxscaffold_2G00093770
rosa_rugosa Rorug02G0446800 Rorug02G0446900 Rorug02G0447000
rosa_samantha Rh2AG513200 Rh2BG523800 Rh2CG498200 Rh2DG533500
rosa_wichuraiana Rw2G042170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 42, 180
AccI GTMKAC 2 cut(s) 135, 290
AciI CCGC 6 cut(s) 40, 58, 145, 178, 320, 351
AclWI GGATC 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 185
AfiI CCNNNNNNNGG 2 cut(s) 46, 268
AluBI AGCT 5 cut(s) 37, 82, 163, 205, 232
AluI AGCT 5 cut(s) 37, 82, 163, 205, 232
Alw21I GWGCWC 2 cut(s) 165, 234
AlwI GGATC 1 cut(s) 120
AoxI GGCC 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 49
AsuC2I CCSGG 1 cut(s) 296
AvaII GGWCC 1 cut(s) 49
BanII GRGCYC 2 cut(s) 165, 234
Bbv12I GWGCWC 2 cut(s) 165, 234
BccI CCATC 2 cut(s) 191, 341
BcgI CGANNNNNNTGC 1 cut(s) 33
BcnI CCSGG 1 cut(s) 296
BisI GCNGC 1 cut(s) 320
BlsI GCNGC 1 cut(s) 321
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 296
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpuEI CTTGAG 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 296
Bsa29I ATCGAT 1 cut(s) 305
BsaJI CCNNGG 3 cut(s) 45, 294, 324
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 209, 239
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 268
BseCI ATCGAT 1 cut(s) 305
BseDI CCNNGG 3 cut(s) 45, 294, 324
BseLI CCNNNNNNNGG 2 cut(s) 46, 268
BseMII CTCAG 1 cut(s) 92
BseRI GAGGAG 2 cut(s) 14, 224
BseYI CCCAGC 1 cut(s) 33
BshFI GGCC 1 cut(s) 319
BshVI ATCGAT 1 cut(s) 305
BsiHKAI GWGCWC 2 cut(s) 165, 234
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 16
BslI CCNNNNNNNGG 2 cut(s) 46, 268
BsmFI GGGAC 1 cut(s) 16
BsnI GGCC 1 cut(s) 319
Bsp1286I GDGCHC 2 cut(s) 165, 234
Bsp143I GATC 3 cut(s) 125, 302, 306
Bsp19I CCATGG 1 cut(s) 324
BspACI CCGC 6 cut(s) 40, 58, 145, 178, 320, 351
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 1 cut(s) 91
BspDI ATCGAT 1 cut(s) 305
BspPI GGATC 1 cut(s) 120
BsrBI CCGCTC 2 cut(s) 42, 180
BssECI CCNNGG 3 cut(s) 45, 294, 324
BssMI GATC 3 cut(s) 125, 302, 306
BssT1I CCWWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 12, 99
BstDEI CTNAG 3 cut(s) 78, 267, 314
BstDSI CCRYGG 1 cut(s) 324
BstENI CCTNNNNNAGG 1 cut(s) 266
BstKTI GATC 3 cut(s) 128, 305, 309
BstMBI GATC 3 cut(s) 125, 302, 306
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 294
Bsu15I ATCGAT 1 cut(s) 305
BsuRI GGCC 1 cut(s) 319
BsuTUI ATCGAT 1 cut(s) 305
BtgI CCRYGG 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 12, 99
Cfr13I GGNCC 1 cut(s) 49
ClaI ATCGAT 1 cut(s) 305
CviAII CATG 1 cut(s) 325
CviJI RGCY 7 cut(s) 37, 82, 163, 205, 232, 319, 356
CviKI_1 RGCY 7 cut(s) 37, 82, 163, 205, 232, 319, 356
DdeI CTNAG 3 cut(s) 78, 267, 314
DpnI GATC 3 cut(s) 127, 304, 308
DpnII GATC 3 cut(s) 125, 302, 306
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
EciI GGCGGA 1 cut(s) 134
Ecl136II GAGCTC 2 cut(s) 163, 232
Eco130I CCWWGG 1 cut(s) 324
Eco24I GRGCYC 2 cut(s) 165, 234
Eco47I GGWCC 1 cut(s) 49
Eco53kI GAGCTC 2 cut(s) 163, 232
Eco57I CTGAAG 1 cut(s) 185
EcoICRI GAGCTC 2 cut(s) 163, 232
EcoNI CCTNNNNNAGG 1 cut(s) 266
EcoO109I RGGNCCY 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 2 cut(s) 165, 234
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 1 cut(s) 328
FaiI YATR 1 cut(s) 326
FaqI GGGAC 1 cut(s) 16
FatI CATG 1 cut(s) 324
FauI CCCGC 2 cut(s) 65, 344
FblI GTMKAC 2 cut(s) 135, 290
Fnu4HI GCNGC 1 cut(s) 320
FriOI GRGCYC 2 cut(s) 165, 234
Fsp4HI GCNGC 1 cut(s) 320
GluI GCNGC 1 cut(s) 320
GsaI CCCAGC 1 cut(s) 37
HaeIII GGCC 1 cut(s) 319
HapII CCGG 1 cut(s) 296
Hin1II CATG 1 cut(s) 328
HincII GTYRAC 2 cut(s) 136, 291
HindII GTYRAC 2 cut(s) 136, 291
HinfI GANTC 3 cut(s) 137, 156, 272
HpaII CCGG 1 cut(s) 296
Hpy166II GTNNAC 2 cut(s) 136, 291
Hpy188I TCNGA 5 cut(s) 46, 67, 125, 169, 229
Hpy8I GTNNAC 2 cut(s) 136, 291
Hpy99I CGWCG 3 cut(s) 137, 289, 292
HpyAV CCTTC 2 cut(s) 97, 266
HpyCH4III ACNGT 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 3 cut(s) 78, 267, 314
Hsp92II CATG 1 cut(s) 328
Kzo9I GATC 3 cut(s) 125, 302, 306
LmnI GCTCC 5 cut(s) 9, 42, 47, 185, 237
LpnPI CCDG 5 cut(s) 20, 47, 107, 309, 347
MaeIII GTNAC 1 cut(s) 364
MalI GATC 3 cut(s) 127, 304, 308
MbiI CCGCTC 2 cut(s) 42, 180
MboI GATC 3 cut(s) 125, 302, 306
MboII GAAGA 2 cut(s) 82, 191
MhlI GDGCHC 2 cut(s) 165, 234
MlyI GAGTC 2 cut(s) 131, 266
MmeI TCCRAC 1 cut(s) 234
MseI TTAA 1 cut(s) 330
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 107
NciI CCSGG 1 cut(s) 296
NcoI CCATGG 1 cut(s) 324
NdeII GATC 3 cut(s) 125, 302, 306
NlaIII CATG 1 cut(s) 328
PcsI WCGNNNNNNNCGW 2 cut(s) 225, 342
PfeI GAWTC 1 cut(s) 156
PkrI GCNGC 1 cut(s) 321
PleI GAGTC 2 cut(s) 131, 266
PpsI GAGTC 2 cut(s) 131, 266
PpuMI RGGWCCY 1 cut(s) 49
Psp124BI GAGCTC 2 cut(s) 165, 234
Psp5II RGGWCCY 1 cut(s) 49
PspFI CCCAGC 1 cut(s) 33
PspPI GGNCC 1 cut(s) 49
PspPPI RGGWCCY 1 cut(s) 49
SacI GAGCTC 2 cut(s) 165, 234
SalI GTCGAC 2 cut(s) 134, 289
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 1 cut(s) 320
Sau3AI GATC 3 cut(s) 125, 302, 306
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 2 cut(s) 131, 266
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 2 cut(s) 165, 234
SinI GGWCC 1 cut(s) 49
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SsiI CCGC 6 cut(s) 40, 58, 145, 178, 320, 351
SstI GAGCTC 2 cut(s) 165, 234
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 5 cut(s) 135, 159, 290, 305, 336
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TspGWI ACGGA 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 49
XagI CCTNNNNNAGG 1 cut(s) 266
XmiI GTMKAC 2 cut(s) 135, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.