Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007055

Physical Location & Seq

Genomic Coordinates Forward (+)

2457027 .. 2459552

Gene Structure 2526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGATGGATCATTTGGTGGAGACGAATTCAGTTCCGAGCAGATTGGTGGAAGAAAGGCTTGATGAGATTCGTAGAGTAATGGGTAAAGCTGATGACGACCCGTTAAGGATCGTTGGTGTAGGAGCTGGTGCTTGGGGAAGCGTTTTCATTGCAATGTTGCAGGAAAATTACGGTAAGTTTAGGGGCAAAGTTAGTGTGAGAATCTGGAGAAGAGGAGGCAGAGCAATCGATAAAGCCACAGCTGAACATTTGTTCGAAGTGATTAATTCGAGGGAAGAATTGTTGAGGAGGTTGATAAGAAGGTGTGCTTATCTCAAGTATGTGGAAGCTAGATTAGGGGATAGGGTTTTATATGCTGATGAGATATTGAAAGATGGGTTTTGCTTGAATATGATTGAGACTCCTTTGTGTCCTTTGAAAGTTGTGACTAATCTTCAAGAAGCTGTTTGGGATGCTGATATTGTCATCAATGGTTTACCATCAACTGAGACGTTTCAGGTGTTCAATGAGATTAGTAAGTATTGGAAAGAGAGGGTTAATGCTCCTGTTATTATCTCTTTGGCTAAAGGTGTGGAAGCAGAGTTTGAGCCTCATCCTCGGATTGTTACTCCTACGCAAATGATCCATCGAGCGACTGGTATTCCTCTTGAGAACATTCTCTACCTTGGGGGACCTAATATTGCTTCCGAGGTATACAATAAAGAGTACGCCAATGCACGGATTTGCGGGTCTGAAAAATGGAGGAAGCCTTTGGGAAAGTTTCTAAGGCAGTCTCATTTCATAGTCTGGGATAATAGTGACCTCATTACTCATGAAGTAATGGGTGGCTTGAAGAATGTTTATGCCATTGGTGCAGTGTTTGTTTTGGCGTTTTTGTATTCCACAGGAATGGTGGCTACACTGACTAAGGAAAGTGCTACCAGCAAATCAGTGTACTTTGCGCATTGTACTTCAGAGATGATTTTTATTACTCATTTATTGGCCAAGGAGCCAGAGAAACTCGCTGGGCCTTTGCTTGCGGATACCTATGTAACATTACTGAAAGGTCGTAATGCGTGGTACGGCCAGAAACTTGCAAAAGGAGAACTTAGCCTTGAAATGGGTGACAGCATCAAAGGCAAGGGAATGATTCAGGGGGTTTCTGCGGTGAAAGCATTTTTCGAGTTGTTGAACCAATCCTCGTTAAGTCTTCAACACCCTGAAGAGGGCAAGCCTGTAACTCCGGCTGAACTTTGTCCCATCTTAAAGATGCTCTACAGAATTCTTATAACAAGAGAGTTCTCGTGTGAGGCGATTCTTGAGGCGCTGAGAGATGAAACGATGAATGACCCACGTGAACTCATCGAGATTGCTCACAGCCATCTCTTCTTCCAGCCATGGCTTCTTGGTCAGAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00564 ko01110 ko04011 map00564 map01110 map04011

Pfam Domains

Protein Families

NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

466

Amino Acids

52.54

Weight (kDa)

6.85

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_Gly3P_dh_N	PF01210	139 - 240	8.5e-10	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_Gly3P_dh_C	PF07479	267 - 423	1.4e-13	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07690 AT3G07690
fragaria_vesca	FvH4_7g02020 FvH4_7g02020 FvH4_7g02190 FvH4_7g02190 FvH4_7g02190
malus_domestica	MD02G1297900.v1.1 MD07G1026300.v1.1
prunus_persica	Prupe.2G026500_v2.0.a1
pyrus_communis	pycom02g25080 pycom07g02000
rosa_chinensis	RchiOBHm_Chr1g0319021 RchiOBHm_Chr1g0319061
rosa_laevigata	RLG00000030507
rosa_multiflora	Rmu_sc0003503.1_g000006
rosa_roxburghii	Rroxscaffold_4G00328670
rosa_rugosa	Rorug01G0026400 Rorug01G0026500
rosa_samantha	Rh1AG038600 Rh1BG034800 Rh1CG037300 Rh1DG032700
rosa_wichuraiana	Rw1G002980 Rw1G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1268
Acc16I	TGCGCA	1 cut(s)	942
AccI	GTMKAC	1 cut(s)	693
AciI	CCGC	3 cut(s)	726, 1019, 1145
AclWI	GGATC	3 cut(s)	15, 116, 616
AcoI	YGGCCR	2 cut(s)	981, 1063
AcsI	RAATTY	2 cut(s)	25, 1260
AcuI	CTGAAG	2 cut(s)	936, 1221
AcvI	CACGTG	1 cut(s)	1334
AfaI	GTAC	4 cut(s)	707, 935, 949, 1061
AfiI	CCNNNNNNNGG	4 cut(s)	717, 1099, 1204, 1205
AgsI	TTSAA	9 cut(s)	370, 388, 418, 437, 505, 832, 1097, 1171, 1193
AluBI	AGCT	5 cut(s)	89, 125, 242, 329, 443
AluI	AGCT	5 cut(s)	89, 125, 242, 329, 443
Alw26I	GTCTC	4 cut(s)	14, 392, 482, 777
AlwI	GGATC	3 cut(s)	15, 116, 616
AoxI	GGCC	3 cut(s)	981, 1007, 1063
ApoI	RAATTY	2 cut(s)	25, 1260
AseI	ATTAAT	1 cut(s)	264
AspLEI	GCGC	2 cut(s)	943, 1306
AspS9I	GGNCC	2 cut(s)	671, 1007
AsuHPI	GGTGA	2 cut(s)	1115, 1159
AsuII	TTCGAA	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	671
BaeI	ACNNNNGTAYC	2 cut(s)	1014, 1047
BalI	TGGCCA	1 cut(s)	983
BauI	CACGAG	1 cut(s)	1282
BbrPI	CACGTG	1 cut(s)	1334
BbsI	GAAGAC	1 cut(s)	1181
BccI	CCATC	5 cut(s)	368, 487, 633, 1247, 1368
BceAI	ACGGC	1 cut(s)	1078
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BciVI	GTATCC	1 cut(s)	1015
BcoDI	GTCTC	4 cut(s)	14, 392, 482, 777
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	1255
BfoI	RGCGCY	1 cut(s)	1307
BfuI	GTATCC	1 cut(s)	1015
Bme18I	GGWCC	1 cut(s)	671
BmgT120I	GGNCC	2 cut(s)	671, 1007
BmiI	GGNNCC	2 cut(s)	672, 990
BmsI	GCATC	3 cut(s)	442, 1119, 1239
BpiI	GAAGAC	1 cut(s)	1181
BpmI	CTGGAG	1 cut(s)	226
Bpu14I	TTCGAA	1 cut(s)	255
BpuEI	CTTGAG	3 cut(s)	299, 668, 1319
Bsa29I	ATCGAT	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	1334
BsaJI	CCNNGG	5 cut(s)	596, 664, 687, 984, 1376
Bsc4I	CCNNNNNNNGG	4 cut(s)	717, 1099, 1204, 1205
Bse1I	ACTGG	1 cut(s)	640
Bse3DI	GCAATG	2 cut(s)	147, 159
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	5 cut(s)	596, 664, 687, 984, 1376
BseGI	GGATG	2 cut(s)	457, 592
BseLI	CCNNNNNNNGG	4 cut(s)	717, 1099, 1204, 1205
BseMI	GCAATG	2 cut(s)	147, 159
BseMII	CTCAG	2 cut(s)	477, 1298
BseNI	ACTGG	1 cut(s)	640
BseRI	GAGGAG	2 cut(s)	228, 301
BseYI	CCCAGC	1 cut(s)	1004
BsgI	GTGCAG	1 cut(s)	873
BshFI	GGCC	3 cut(s)	983, 1009, 1065
BshVI	ATCGAT	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	1223
BslFI	GGGAC	2 cut(s)	684, 1221
BslI	CCNNNNNNNGG	4 cut(s)	717, 1099, 1204, 1205
BsmAI	GTCTC	4 cut(s)	14, 392, 482, 777
BsmBI	CGTCTC	2 cut(s)	14, 482
BsmFI	GGGAC	2 cut(s)	684, 1221
BsnI	GGCC	3 cut(s)	983, 1009, 1065
Bsp119I	TTCGAA	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	7, 108, 621
Bsp19I	CCATGG	1 cut(s)	1376
BspACI	CCGC	3 cut(s)	726, 1019, 1145
BspANI	GGCC	3 cut(s)	983, 1009, 1065
BspCNI	CTCAG	2 cut(s)	478, 1299
BspDI	ATCGAT	1 cut(s)	228
BspHI	TCATGA	1 cut(s)	811
BspLI	GGNNCC	2 cut(s)	672, 990
BspPI	GGATC	3 cut(s)	15, 116, 616
BspT104I	TTCGAA	1 cut(s)	255
BsrDI	GCAATG	2 cut(s)	147, 159
BsrI	ACTGG	1 cut(s)	640
BssECI	CCNNGG	5 cut(s)	596, 664, 687, 984, 1376
BssMI	GATC	3 cut(s)	7, 108, 621
BssNAI	GTATAC	1 cut(s)	694
BssSI	CACGAG	1 cut(s)	1282
BssT1I	CCWWGG	3 cut(s)	664, 984, 1376
Bst1107I	GTATAC	1 cut(s)	694
Bst2BI	CACGAG	1 cut(s)	1282
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	3 cut(s)	205, 1197, 1370
BstBAI	YACGTR	1 cut(s)	1334
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	1017, 1211
BstDEI	CTNAG	5 cut(s)	486, 764, 906, 1088, 1307
BstDSI	CCRYGG	1 cut(s)	1376
BstF5I	GGATG	2 cut(s)	457, 592
BstH2I	RGCGCY	1 cut(s)	1307
BstHHI	GCGC	2 cut(s)	943, 1306
BstKTI	GATC	3 cut(s)	10, 111, 624
BstMAI	GTCTC	4 cut(s)	14, 392, 482, 777
BstMBI	GATC	3 cut(s)	7, 108, 621
BstMWI	GCNNNNNNNGC	3 cut(s)	851, 1116, 1151
BstSFI	CTRYAG	1 cut(s)	1255
BstV2I	GAAGAC	1 cut(s)	1181
BstXI	CCANNNNNNTGG	1 cut(s)	889
BstZ17I	GTATAC	1 cut(s)	694
Bsu15I	ATCGAT	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	1015
BsuRI	GGCC	3 cut(s)	983, 1009, 1065
BsuTUI	ATCGAT	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	1376
BtsCI	GGATG	2 cut(s)	457, 592
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	3 cut(s)	861, 899, 936
Cac8I	GCNNGC	2 cut(s)	1017, 1211
CciI	TCATGA	1 cut(s)	811
CfoI	GCGC	2 cut(s)	943, 1306
Cfr13I	GGNCC	2 cut(s)	671, 1007
ClaI	ATCGAT	1 cut(s)	228
Csp6I	GTAC	4 cut(s)	706, 934, 948, 1060
CviAII	CATG	2 cut(s)	812, 1377
CviQI	GTAC	4 cut(s)	706, 934, 948, 1060
DdeI	CTNAG	5 cut(s)	486, 764, 906, 1088, 1307
DpnI	GATC	3 cut(s)	9, 110, 623
DpnII	GATC	3 cut(s)	7, 108, 621
EaeI	YGGCCR	2 cut(s)	981, 1063
Eam1104I	CTCTTC	3 cut(s)	205, 1197, 1370
EarI	CTCTTC	3 cut(s)	205, 1197, 1370
Eco130I	CCWWGG	3 cut(s)	664, 984, 1376
Eco47I	GGWCC	1 cut(s)	671
Eco57I	CTGAAG	2 cut(s)	936, 1221
Eco72I	CACGTG	1 cut(s)	1334
EcoO109I	RGGNCCY	1 cut(s)	671
EcoRI	GAATTC	2 cut(s)	25, 1260
EcoT14I	CCWWGG	3 cut(s)	664, 984, 1376
ErhI	CCWWGG	3 cut(s)	664, 984, 1376
Esp3I	CGTCTC	2 cut(s)	14, 482
FaeI	CATG	2 cut(s)	815, 1380
FalI	AAGNNNNNCTT	6 cut(s)	42, 74, 292, 324, 1071, 1103
FaqI	GGGAC	2 cut(s)	684, 1221
FatI	CATG	2 cut(s)	811, 1376
FauI	CCCGC	1 cut(s)	719
FblI	GTMKAC	1 cut(s)	693
FokI	GGATG	2 cut(s)	464, 579
FspBI	CTAG	1 cut(s)	330
FspI	TGCGCA	1 cut(s)	942
GlaI	GCGC	2 cut(s)	942, 1305
GsaI	CCCAGC	1 cut(s)	1008
GsuI	CTGGAG	1 cut(s)	226
HaeII	RGCGCY	1 cut(s)	1307
HaeIII	GGCC	3 cut(s)	983, 1009, 1065
HapII	CCGG	1 cut(s)	1223
HhaI	GCGC	2 cut(s)	943, 1306
Hin1II	CATG	2 cut(s)	815, 1380
Hin6I	GCGC	2 cut(s)	941, 1304
HinP1I	GCGC	2 cut(s)	941, 1304
HinfI	GANTC	5 cut(s)	67, 201, 400, 1129, 1294
HpaII	CCGG	1 cut(s)	1223
HphI	GGTGA	2 cut(s)	1115, 1159
Hpy166II	GTNNAC	4 cut(s)	476, 694, 934, 1337
Hpy188I	TCNGA	6 cut(s)	36, 600, 688, 733, 955, 1392
Hpy188III	TCNNGA	6 cut(s)	205, 437, 647, 812, 1298, 1345
Hpy8I	GTNNAC	4 cut(s)	476, 694, 934, 1337
HpyAV	CCTTC	1 cut(s)	294
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	2 cut(s)	491, 1333
HpyCH4V	TGCA	5 cut(s)	152, 160, 716, 854, 1076
HpyF10VI	GCNNNNNNNGC	3 cut(s)	851, 1116, 1151
HpyF3I	CTNAG	5 cut(s)	486, 764, 906, 1088, 1307
HpySE526I	ACGT	2 cut(s)	491, 1333
Hsp92II	CATG	2 cut(s)	815, 1380
HspAI	GCGC	2 cut(s)	941, 1304
Kzo9I	GATC	3 cut(s)	7, 108, 621
LmnI	GCTCC	3 cut(s)	122, 547, 988
LweI	GCATC	3 cut(s)	442, 1119, 1239
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	2 cut(s)	491, 1333
MaeIII	GTNAC	6 cut(s)	424, 604, 797, 1030, 1103, 1216
MalI	GATC	3 cut(s)	9, 110, 623
MboI	GATC	3 cut(s)	7, 108, 621
MboII	GAAGA	9 cut(s)	62, 222, 287, 425, 844, 1181, 1214, 1357, 1360
MlsI	TGGCCA	1 cut(s)	983
MluCI	AATT	5 cut(s)	25, 166, 265, 278, 1260
MluNI	TGGCCA	1 cut(s)	983
MlyI	GAGTC	1 cut(s)	394
Mox20I	TGGCCA	1 cut(s)	983
MscI	TGGCCA	1 cut(s)	983
MseI	TTAA	5 cut(s)	104, 264, 537, 1184, 1244
MslI	CAYNNNNRTG	2 cut(s)	152, 887
Msp20I	TGGCCA	1 cut(s)	983
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	1 cut(s)	1223
MwoI	GCNNNNNNNGC	3 cut(s)	851, 1116, 1151
NcoI	CCATGG	1 cut(s)	1376
NdeII	GATC	3 cut(s)	7, 108, 621
NlaIII	CATG	2 cut(s)	815, 1380
NlaIV	GGNNCC	2 cut(s)	672, 990
NmuCI	GTSAC	3 cut(s)	424, 797, 1103
NsbI	TGCGCA	1 cut(s)	942
NspV	TTCGAA	1 cut(s)	255
PagI	TCATGA	1 cut(s)	811
PcsI	WCGNNNNNNNCGW	1 cut(s)	1289
PfeI	GAWTC	4 cut(s)	67, 201, 1129, 1294
PleI	GAGTC	1 cut(s)	394
PmaCI	CACGTG	1 cut(s)	1334
PmlI	CACGTG	1 cut(s)	1334
PpsI	GAGTC	1 cut(s)	394
Ppu21I	YACGTR	1 cut(s)	1334
PpuMI	RGGWCCY	1 cut(s)	671
PshBI	ATTAAT	1 cut(s)	264
PsiI	TTATAA	1 cut(s)	1268
Psp5II	RGGWCCY	1 cut(s)	671
PspCI	CACGTG	1 cut(s)	1334
PspFI	CCCAGC	1 cut(s)	1004
PspN4I	GGNNCC	2 cut(s)	672, 990
PspPI	GGNCC	2 cut(s)	671, 1007
PspPPI	RGGWCCY	1 cut(s)	671
PsrI	GAACNNNNNNTAC	2 cut(s)	644, 676
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	4 cut(s)	707, 935, 949, 1061
RsaNI	GTAC	4 cut(s)	706, 934, 948, 1060
RseI	CAYNNNNRTG	2 cut(s)	152, 887
SaqAI	TTAA	5 cut(s)	104, 264, 537, 1184, 1244
Sau3AI	GATC	3 cut(s)	7, 108, 621
Sau96I	GGNCC	2 cut(s)	671, 1007
SchI	GAGTC	1 cut(s)	394
SfaNI	GCATC	3 cut(s)	442, 1119, 1239
SfcI	CTRYAG	1 cut(s)	1255
SfuI	TTCGAA	1 cut(s)	255
SinI	GGWCC	1 cut(s)	671
SmiMI	CAYNNNNRTG	2 cut(s)	152, 887
SmlI	CTYRAG	3 cut(s)	314, 647, 1298
SmoI	CTYRAG	3 cut(s)	314, 647, 1298
Sse9I	AATT	5 cut(s)	25, 166, 265, 278, 1260
SsiI	CCGC	3 cut(s)	726, 1019, 1145
SspI	AATATT	1 cut(s)	679
SspMI	CTAG	1 cut(s)	330
StyI	CCWWGG	3 cut(s)	664, 984, 1376
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	2 cut(s)	494, 1336
TaqI	TCGA	6 cut(s)	228, 255, 269, 628, 1161, 1344
TasI	AATT	5 cut(s)	25, 166, 265, 278, 1260
TatI	WGTACW	2 cut(s)	933, 947
TfiI	GAWTC	4 cut(s)	67, 201, 1129, 1294
Tru1I	TTAA	5 cut(s)	104, 264, 537, 1184, 1244
Tru9I	TTAA	5 cut(s)	104, 264, 537, 1184, 1244
TscAI	CASTG	3 cut(s)	861, 906, 936
TseFI	GTSAC	3 cut(s)	424, 797, 1103
Tsp45I	GTSAC	3 cut(s)	424, 797, 1103
TspDTI	ATGAA	5 cut(s)	136, 769, 828, 1329, 1337
TspGWI	ACGGA	1 cut(s)	733
TspRI	CASTG	3 cut(s)	861, 906, 936
VpaK11BI	GGWCC	1 cut(s)	671
VspI	ATTAAT	1 cut(s)	264
XapI	RAATTY	2 cut(s)	25, 1260
XcmI	CCANNNNNNNNNTGG	2 cut(s)	632, 889
XmiI	GTMKAC	1 cut(s)	693
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.