Rorug01G0026400

glycerol-3-phosphate dehydrogenase NAD(

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
4495169 .. 4499995
4827 bp
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UTR
Exon/CDS
Intron
Rorug01G0026400.1

Sequence Viewer

Length: 777 bp
ATGAAGAGAAAAATGGGTAGGGGGAAGATTGAGATCAAGAAGATTGAGAACACCAACAGCAGACAAGTCACATTCTCAAAGAGGCGTGGTGGATTACTCAAGAAAGCTCATGAATTGGCTATTCTATGCGATGCTGAGGTTGCTGTCATCGTCTTCTCTAACACTGGCAAGCTTTTTGAGTTTTCCAGTGCTGGTATGAAGCGAACTATTGCAAGATACAGCAAGTGTTATGAGTCTTCAGAGACTGCTCTGGTAGAATCAAGGGCAGAGGAGGATGACCCTAAGGACGTGGATGTTCTAAAAGATGAACTTGAGAAGCTACAACAGAATCAATTGCGTCTGTTGGGCAATGACTTGTCTAGTTTGAGCTTGAAAGAATTGCAGAAACTAGAAAATCAATTAACTGAAGGATTATTTTCAGTGAAGGAGAAAAAGGACAAATTACTGATGGAGCAACTAGAGCAATCAAGAGTAAAGGAACAGCGTGCTATACATGAGAATGAAACCTTGCGTAAACAGGTTGAGGAGCTTCGGCGTTTATTTCCCCAAGCTGATCATGCAGTTCCATCTTATCTCGACTATTGTCCTGTAGAAAAACAGAACTCCCCTGTGTACCATGGTGCCAAAAGCCCCGATTTGGTCAGCAATTTTGCATTTGACAATGGAGATTCTGACACTACATTGCAATTAGGGCTGCCAAGCGATACATATCGCAAGAGGAAGGCTCCAGAAAGAGAAAGCCACTCTAATGACTCAGGGAGCCAACTAGGCCTGTAA

Protein Analysis

258

Amino Acids

29.34

Weight (kDa)

7.68

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 14 - 61 1.6e-26 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 91 - 175 2.7e-19 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 620
AcuI CTGAAG 2 cut(s) 222, 426
AfaI GTAC 1 cut(s) 614
AfiI CCNNNNNNNGG 1 cut(s) 637
AgsI TTSAA 1 cut(s) 373
AjiI CACGTC 1 cut(s) 289
AluBI AGCT 6 cut(s) 107, 172, 319, 369, 529, 551
AluI AGCT 6 cut(s) 107, 172, 319, 369, 529, 551
Alw26I GTCTC 1 cut(s) 236
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 1 cut(s) 769
ApeKI GCWGC 1 cut(s) 694
AxyI CCTNAGG 1 cut(s) 282
BanI GGYRCC 1 cut(s) 620
BbsI GAAGAC 2 cut(s) 145, 228
BbvCI CCTCAGC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 681
BccI CCATC 2 cut(s) 442, 574
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 4 cut(s) 360, 389, 458, 767
BfmI CTRYAG 1 cut(s) 588
BglI GCCNNNNNGGC 1 cut(s) 768
BisI GCNGC 1 cut(s) 695
BlsI GCNGC 1 cut(s) 696
BmgBI CACGTC 1 cut(s) 289
BmiI GGNNCC 3 cut(s) 622, 726, 761
BmsI GCATC 1 cut(s) 121
BoxI GACNNNNGTC 1 cut(s) 582
BpiI GAAGAC 2 cut(s) 145, 228
BplI GAGNNNNNCTC 2 cut(s) 709, 741
BpmI CTGGAG 1 cut(s) 711
Bpu10I CCTNAGC 1 cut(s) 135
BpuEI CTTGAG 2 cut(s) 83, 332
BsaBI GATNNNNATC 2 cut(s) 32, 708
BsaJI CCNNGG 1 cut(s) 616
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse1I ACTGG 2 cut(s) 169, 186
Bse21I CCTNAGG 1 cut(s) 282
Bse3DI GCAATG 2 cut(s) 355, 680
Bse8I GATNNNNATC 2 cut(s) 32, 708
BseDI CCNNGG 1 cut(s) 616
BseGI GGATG 2 cut(s) 280, 298
BseJI GATNNNNATC 2 cut(s) 32, 708
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMI GCAATG 2 cut(s) 355, 680
BseMII CTCAG 2 cut(s) 126, 768
BseNI ACTGG 2 cut(s) 169, 186
BseRI GAGGAG 2 cut(s) 284, 539
BseXI GCAGC 1 cut(s) 681
BshFI GGCC 1 cut(s) 771
BshNI GGYRCC 1 cut(s) 620
BslI CCNNNNNNNGG 1 cut(s) 637
BsmAI GTCTC 1 cut(s) 236
BsnI GGCC 1 cut(s) 771
Bsp143I GATC 2 cut(s) 33, 553
Bsp19I CCATGG 1 cut(s) 616
BspANI GGCC 1 cut(s) 771
BspCNI CTCAG 2 cut(s) 127, 767
BspHI TCATGA 1 cut(s) 109
BspLI GGNNCC 3 cut(s) 622, 726, 761
BspT107I GGYRCC 1 cut(s) 620
BsrDI GCAATG 2 cut(s) 355, 680
BsrI ACTGG 2 cut(s) 169, 186
BssECI CCNNGG 1 cut(s) 616
BssMI GATC 2 cut(s) 33, 553
BssT1I CCWWGG 1 cut(s) 616
BstC8I GCNNGC 2 cut(s) 170, 486
BstDEI CTNAG 3 cut(s) 135, 282, 754
BstDSI CCRYGG 1 cut(s) 616
BstF5I GGATG 2 cut(s) 280, 298
BstKTI GATC 2 cut(s) 36, 556
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 2 cut(s) 33, 553
BstMWI GCNNNNNNNGC 5 cut(s) 140, 460, 557, 691, 768
BstPAI GACNNNNGTC 1 cut(s) 582
BstSFI CTRYAG 1 cut(s) 588
BstV1I GCAGC 1 cut(s) 681
BstV2I GAAGAC 2 cut(s) 145, 228
Bsu36I CCTNAGG 1 cut(s) 282
BsuRI GGCC 1 cut(s) 771
BtgI CCRYGG 1 cut(s) 616
BtgZI GCGATG 1 cut(s) 144
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 2 cut(s) 280, 298
BtsIMutI CAGTG 3 cut(s) 162, 193, 426
Cac8I GCNNGC 2 cut(s) 170, 486
CaiI CAGNNNCTG 1 cut(s) 245
CciI TCATGA 1 cut(s) 109
CseI GACGC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 613
CviAII CATG 4 cut(s) 110, 494, 557, 617
CviQI GTAC 1 cut(s) 613
DdeI CTNAG 3 cut(s) 135, 282, 754
DpnI GATC 2 cut(s) 35, 555
DpnII GATC 2 cut(s) 33, 553
Eco130I CCWWGG 1 cut(s) 616
Eco147I AGGCCT 1 cut(s) 771
Eco57I CTGAAG 2 cut(s) 222, 426
Eco81I CCTNAGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 616
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 4 cut(s) 113, 497, 560, 620
FaiI YATR 9 cut(s) 111, 127, 197, 231, 491, 495, 558, 618, 709
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 4 cut(s) 109, 493, 556, 616
FbaI TGATCA 1 cut(s) 553
Fnu4HI GCNGC 1 cut(s) 695
FokI GGATG 2 cut(s) 287, 305
Fsp4HI GCNGC 1 cut(s) 695
FspBI CTAG 4 cut(s) 360, 389, 458, 767
GluI GCNGC 1 cut(s) 695
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 1 cut(s) 771
HgaI GACGC 1 cut(s) 326
Hin1II CATG 4 cut(s) 113, 497, 560, 620
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 5 cut(s) 233, 257, 328, 668, 752
Hpy166II GTNNAC 2 cut(s) 515, 613
Hpy188I TCNGA 2 cut(s) 241, 673
Hpy188III TCNNGA 6 cut(s) 37, 100, 110, 468, 575, 728
Hpy8I GTNNAC 2 cut(s) 515, 613
HpyAV CCTTC 3 cut(s) 401, 418, 715
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 5 cut(s) 212, 382, 560, 653, 685
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 460, 557, 691, 768
HpyF3I CTNAG 3 cut(s) 135, 282, 754
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 4 cut(s) 113, 497, 560, 620
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 2 cut(s) 33, 553
LmnI GCTCC 4 cut(s) 451, 526, 730, 759
LpnPI CCDG 9 cut(s) 150, 177, 199, 236, 503, 600, 621, 741, 741
Lsp1109I GCAGC 1 cut(s) 681
LweI GCATC 1 cut(s) 121
MaeI CTAG 4 cut(s) 360, 389, 458, 767
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 35, 555
MboI GATC 2 cut(s) 33, 553
MboII GAAGA 5 cut(s) 16, 37, 52, 145, 228
MfeI CAATTG 1 cut(s) 332
MluCI AATT 7 cut(s) 113, 332, 377, 398, 440, 646, 686
MlyI GAGTC 2 cut(s) 242, 746
MnlI CCTC 6 cut(s) 75, 130, 262, 265, 517, 711
MseI TTAA 1 cut(s) 401
MslI CAYNNNNRTG 2 cut(s) 498, 747
MunI CAATTG 1 cut(s) 332
MwoI GCNNNNNNNGC 5 cut(s) 140, 460, 557, 691, 768
NcoI CCATGG 1 cut(s) 616
NdeII GATC 2 cut(s) 33, 553
NlaIII CATG 4 cut(s) 113, 497, 560, 620
NlaIV GGNNCC 3 cut(s) 622, 726, 761
NmuCI GTSAC 1 cut(s) 67
PagI TCATGA 1 cut(s) 109
PceI AGGCCT 1 cut(s) 771
PfeI GAWTC 3 cut(s) 257, 328, 668
PkrI GCNGC 1 cut(s) 696
PleI GAGTC 2 cut(s) 241, 746
PpsI GAGTC 2 cut(s) 241, 746
PshAI GACNNNNGTC 1 cut(s) 582
PspN4I GGNNCC 3 cut(s) 622, 726, 761
PstNI CAGNNNCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 614
RsaNI GTAC 1 cut(s) 613
RseI CAYNNNNRTG 2 cut(s) 498, 747
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 1 cut(s) 695
Sau3AI GATC 2 cut(s) 33, 553
SchI GAGTC 2 cut(s) 242, 746
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 588
SmiMI CAYNNNNRTG 2 cut(s) 498, 747
SmlI CTYRAG 2 cut(s) 98, 311
SmoI CTYRAG 2 cut(s) 98, 311
Sse9I AATT 7 cut(s) 113, 332, 377, 398, 440, 646, 686
SseBI AGGCCT 1 cut(s) 771
SspMI CTAG 4 cut(s) 360, 389, 458, 767
StuI AGGCCT 1 cut(s) 771
StyI CCWWGG 1 cut(s) 616
TaiI ACGT 1 cut(s) 291
TaqI TCGA 1 cut(s) 576
TasI AATT 7 cut(s) 113, 332, 377, 398, 440, 646, 686
TfiI GAWTC 3 cut(s) 257, 328, 668
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TscAI CASTG 3 cut(s) 169, 193, 426
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 694
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 5 cut(s) 17, 126, 212, 321, 516
TspRI CASTG 3 cut(s) 169, 193, 426
XspI CTAG 4 cut(s) 360, 389, 458, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.