Rroxscaffold_1G00047030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000210
Physical Location & Seq
Reverse (-)
66503967 .. 66505666
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00047030.1

Sequence Viewer

Length: 333 bp
ATGGGTAGGAAGCCACCGAAGCGTTCATCAAAGAAACGATCAGTTTTCAAGGTTGTACTTGGTGACTTCTGTACACATCTGAGAATTCCAAAGAAACCAGCCATAGGTGAAGGCATTATGAGCAAGAAGAGTGTGAAGGTTCAAGATCCAATGAGGAGAATATGGCTTGTTAAACTATTGCTTGTTGAATATAAGTGCACCTCTGATCGTATGGAGCGGTGGCAAAAGGCAGGTCAGCTTATTGTAGAGAGAACCAGATTTCAGATGGGGACACCATTGTTTTTGAATTTGTCAAGCGGGTCCTCTTGTAATTATTTTGCTTATGGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.71

Weight (kDa)

10.45

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 221
AccBSI CCGCTC 1 cut(s) 217
AciI CCGC 2 cut(s) 217, 297
AclWI GGATC 1 cut(s) 140
AcsI RAATTY 2 cut(s) 84, 286
AfaI GTAC 2 cut(s) 57, 73
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 4 cut(s) 49, 143, 188, 286
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Alw21I GWGCWC 1 cut(s) 200
Alw44I GTGCAC 1 cut(s) 196
AlwI GGATC 1 cut(s) 140
ApaLI GTGCAC 1 cut(s) 196
ApoI RAATTY 2 cut(s) 84, 286
ArsI GACNNNNNNTTYG 2 cut(s) 217, 249
AspS9I GGNCC 1 cut(s) 300
AsuHPI GGTGA 2 cut(s) 74, 119
AvaII GGWCC 1 cut(s) 300
BaeGI GKGCMC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 200
BccI CCATC 1 cut(s) 259
BfuAI ACCTGC 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 300
BmiI GGNNCC 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 104
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 169
BseSI GKGCMC 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 200
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 200
Bsp1407I TGTACA 1 cut(s) 71
Bsp143I GATC 3 cut(s) 38, 145, 205
BspACI CCGC 2 cut(s) 217, 297
BspCNI CTCAG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 301
BspMI ACCTGC 1 cut(s) 221
BspPI GGATC 1 cut(s) 140
BsrBI CCGCTC 1 cut(s) 217
BsrGI TGTACA 1 cut(s) 71
BssMI GATC 3 cut(s) 38, 145, 205
Bst6I CTCTTC 1 cut(s) 122
BstAUI TGTACA 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 80
BstKTI GATC 3 cut(s) 41, 148, 208
BstMBI GATC 3 cut(s) 38, 145, 205
BstMWI GCNNNNNNNGC 2 cut(s) 19, 120
BstSLI GKGCMC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BveI ACCTGC 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 300
Csp6I GTAC 2 cut(s) 56, 72
CviJI RGCY 4 cut(s) 13, 101, 166, 238
CviKI_1 RGCY 4 cut(s) 13, 101, 166, 238
CviQI GTAC 2 cut(s) 56, 72
DdeI CTNAG 1 cut(s) 80
DpnI GATC 3 cut(s) 40, 147, 207
DpnII GATC 3 cut(s) 38, 145, 205
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 300
EcoO109I RGGNCCY 1 cut(s) 300
EcoRI GAATTC 1 cut(s) 84
FaiI YATR 6 cut(s) 104, 119, 163, 192, 212, 324
FaqI GGGAC 1 cut(s) 283
FauI CCCGC 1 cut(s) 290
HphI GGTGA 2 cut(s) 74, 119
Hpy166II GTNNAC 2 cut(s) 74, 198
Hpy188I TCNGA 3 cut(s) 81, 205, 264
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 2 cut(s) 74, 198
HpyAV CCTTC 2 cut(s) 104, 130
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 120
HpyF3I CTNAG 1 cut(s) 80
Kzo9I GATC 3 cut(s) 38, 145, 205
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 3 cut(s) 111, 216, 268
MaeIII GTNAC 1 cut(s) 62
MalI GATC 3 cut(s) 40, 147, 207
MbiI CCGCTC 1 cut(s) 217
MboI GATC 3 cut(s) 38, 145, 205
MboII GAAGA 1 cut(s) 139
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 3 cut(s) 84, 286, 310
MnlI CCTC 3 cut(s) 147, 211, 313
MseI TTAA 2 cut(s) 171, 331
MwoI GCNNNNNNNGC 2 cut(s) 19, 120
NdeII GATC 3 cut(s) 38, 145, 205
NlaIV GGNNCC 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 62
PpuMI RGGWCCY 1 cut(s) 300
Psp5II RGGWCCY 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 1 cut(s) 300
PspPPI RGGWCCY 1 cut(s) 300
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 2 cut(s) 57, 73
RsaNI GTAC 2 cut(s) 56, 72
SaqAI TTAA 2 cut(s) 171, 331
Sau3AI GATC 3 cut(s) 38, 145, 205
Sau96I GGNCC 1 cut(s) 300
SduI GDGCHC 1 cut(s) 200
SetI ASST 6 cut(s) 54, 109, 141, 203, 235, 240
SinI GGWCC 1 cut(s) 300
Sse9I AATT 3 cut(s) 84, 286, 310
SsiI CCGC 2 cut(s) 217, 297
TasI AATT 3 cut(s) 84, 286, 310
TatI WGTACW 2 cut(s) 55, 71
Tru1I TTAA 2 cut(s) 171, 331
Tru9I TTAA 2 cut(s) 171, 331
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 15
VneI GTGCAC 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 300
XapI RAATTY 2 cut(s) 84, 286
XcmI CCANNNNNNNNNTGG 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.