RchiOBHm_Chr7g0224941

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000210
Physical Location & Seq
Forward (+)
47308186 .. 47309776
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20143

Sequence Viewer

Length: 927 bp
ATGGGTGAGGAAGTAATGGCATGTTTTAAGAAACAAGGCAAATGTTCGATGAGTGGAAAGGTTAATGATCCGAAGAGATGTTATGTTGAAAACTTCATTTGGAATGGGAGATCACCTCACGAATGTGCTCTTAGAGGTCCTAGTGGACAATGTTGGGCTGTGGAATTGAAAAGAACAGAAAATGGCTTGTTCTTCCAGAATGGATGGCAGTGTTTTGTGAAGGATCACCATTTAGAACTTGGGGATTTTTTGATCTTCAGACATGATGGTGAATCGAAGTTTAATGTCATAATCTATGATAGAAGTGCCTGTGAGAAAGATGTAAAAGTAGCCAAGAGGAGAATGAACTGTTCTGTTTGTTTGAGGAATAACGGAAATCAAGCTCGAGTAAAAGATGAAGTTCTTGACCTTGTAACTGAAAACAACAAGAACATAGACAGTAGAGGTGAAGCAGTCGTTGCTGATGAAAAAGGCAATGATGTCATGTCGGGAAAGAGACCTGCTAATGGTTACTTGGAAGAAACATCAGATGGATCCATCTTGTTCAAATCGGAGAATCCATGTTTTCAAAGAATTTTGACGAAGCATTCAAAATATCACATTGGGTTTCCAAAAGAACTAGGTGTAGCTAAAGGTCTTATGAATAAGAAGACCATGAAGCTTGAAGATCCAACTGGGAGATCATGGCCTGTTAGTCTGCGTCTTTCTAAATTTTACAAAAAAGATGCCAGATTATATGACCGTTTAGACTTGACATCAGGTTGGTCACAAATTTGTGAAGCGAACAAGATTTCACCTGGGGATACCATTATTTTTGAGCTTGTCAAGCAAAGAGTAATGAAAATTCATATTATCGAAGTAGGGAGAATGAGAGGCAAAGGATGTGCTGTTAAACTAGTTGCTCCTAATGTCAAAAGTTCAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

308

Amino Acids

34.92

Weight (kDa)

9.22

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 24 - 101 8.4e-14 B3 DNA binding domain
B3 PF02362 202 - 283 6.7e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 508
AclWI GGATC 5 cut(s) 62, 231, 528, 541, 662
AcsI RAATTY 4 cut(s) 573, 710, 771, 843
AcuI CTGAAG 1 cut(s) 241
AfiI CCNNNNNNNGG 1 cut(s) 506
AgsI TTSAA 7 cut(s) 89, 169, 547, 569, 591, 665, 921
AhlI ACTAGT 1 cut(s) 895
AjnI CCWGG 1 cut(s) 796
AleI CACNNNNGTG 1 cut(s) 123
AluBI AGCT 4 cut(s) 383, 629, 661, 820
AluI AGCT 4 cut(s) 383, 629, 661, 820
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 490
AlwI GGATC 5 cut(s) 62, 231, 528, 541, 662
Ama87I CYCGRG 1 cut(s) 384
AoxI GGCC 1 cut(s) 686
ApoI RAATTY 4 cut(s) 573, 710, 771, 843
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 6 cut(s) 17, 105, 218, 281, 458, 786
AvaI CYCGRG 1 cut(s) 384
AvaII GGWCC 1 cut(s) 137
BamHI GGATCC 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 656
Bbv12I GWGCWC 1 cut(s) 130
BccI CCATC 4 cut(s) 198, 260, 524, 545
BciT130I CCWGG 1 cut(s) 798
BciVI GTATCC 1 cut(s) 796
BcoDI GTCTC 1 cut(s) 490
BcuI ACTAGT 1 cut(s) 895
BfaI CTAG 4 cut(s) 141, 620, 896, 925
BfuAI ACCTGC 1 cut(s) 508
BfuI GTATCC 1 cut(s) 796
Bme1390I CCNGG 1 cut(s) 798
Bme18I GGWCC 1 cut(s) 137
BmeT110I CYCGRG 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 535
BmrFI CCNGG 1 cut(s) 798
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 1 cut(s) 715
BmuI ACTGGG 1 cut(s) 684
BpiI GAAGAC 1 cut(s) 656
BplI GAGNNNNNCTC 2 cut(s) 100, 132
BsaI GGTCTC 1 cut(s) 490
BsaJI CCNNGG 1 cut(s) 797
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse1I ACTGG 1 cut(s) 679
Bse3DI GCAATG 1 cut(s) 481
BseBI CCWGG 1 cut(s) 798
BseDI CCNNGG 1 cut(s) 797
BseGI GGATG 2 cut(s) 209, 887
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMI GCAATG 1 cut(s) 481
BseNI ACTGG 1 cut(s) 679
BseRI GAGGAG 1 cut(s) 352
BshFI GGCC 1 cut(s) 688
BsiHKAI GWGCWC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 384
BslI CCNNNNNNNGG 1 cut(s) 506
BsmAI GTCTC 1 cut(s) 490
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 1 cut(s) 688
Bso31I GGTCTC 1 cut(s) 490
BsoBI CYCGRG 1 cut(s) 384
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 7 cut(s) 67, 110, 223, 252, 533, 667, 680
BspANI GGCC 1 cut(s) 688
BspLI GGNNCC 1 cut(s) 535
BspMI ACCTGC 1 cut(s) 508
BspPI GGATC 5 cut(s) 62, 231, 528, 541, 662
BspTNI GGTCTC 1 cut(s) 490
BsrDI GCAATG 1 cut(s) 481
BsrI ACTGG 1 cut(s) 679
BssECI CCNNGG 1 cut(s) 797
BssMI GATC 7 cut(s) 67, 110, 223, 252, 533, 667, 680
Bst2UI CCWGG 1 cut(s) 798
Bst4CI ACNGT 3 cut(s) 350, 440, 743
Bst6I CTCTTC 1 cut(s) 68
BstAPI GCANNNNNTGC 1 cut(s) 458
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 2 cut(s) 209, 887
BstKTI GATC 7 cut(s) 70, 113, 226, 255, 536, 670, 683
BstMAI GTCTC 1 cut(s) 490
BstMBI GATC 7 cut(s) 67, 110, 223, 252, 533, 667, 680
BstMWI GCNNNNNNNGC 2 cut(s) 458, 826
BstNI CCWGG 1 cut(s) 798
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 796
BstV2I GAAGAC 1 cut(s) 656
BstX2I RGATCY 2 cut(s) 533, 667
BstYI RGATCY 2 cut(s) 533, 667
BsuI GTATCC 1 cut(s) 796
BsuRI GGCC 1 cut(s) 688
BtsCI GGATG 2 cut(s) 209, 887
BtsI GCAGTG 1 cut(s) 215
BtsIMutI CAGTG 1 cut(s) 215
BveI ACCTGC 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 137
CseI GACGC 1 cut(s) 689
CviAII CATG 6 cut(s) 21, 263, 484, 561, 655, 684
CviJI RGCY 8 cut(s) 158, 186, 332, 383, 629, 661, 688, 820
CviKI_1 RGCY 8 cut(s) 158, 186, 332, 383, 629, 661, 688, 820
DdeI CTNAG 1 cut(s) 131
DpnI GATC 7 cut(s) 69, 112, 225, 254, 535, 669, 682
DpnII GATC 7 cut(s) 67, 110, 223, 252, 533, 667, 680
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 384
EcoO109I RGGNCCY 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 796
FaeI CATG 6 cut(s) 24, 266, 487, 564, 658, 687
FatI CATG 6 cut(s) 20, 262, 483, 560, 654, 683
FokI GGATG 2 cut(s) 216, 894
FspBI CTAG 4 cut(s) 141, 620, 896, 925
HaeIII GGCC 1 cut(s) 688
HgaI GACGC 1 cut(s) 689
Hin1II CATG 6 cut(s) 24, 266, 487, 564, 658, 687
HindIII AAGCTT 1 cut(s) 659
HinfI GANTC 2 cut(s) 272, 556
HphI GGTGA 6 cut(s) 17, 105, 218, 281, 458, 786
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 4 cut(s) 72, 260, 529, 553
Hpy188III TCNNGA 4 cut(s) 119, 196, 404, 489
Hpy8I GTNNAC 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 3 cut(s) 350, 440, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 458, 826
HpyF3I CTNAG 1 cut(s) 131
Hsp92II CATG 6 cut(s) 24, 266, 487, 564, 658, 687
Kzo9I GATC 7 cut(s) 67, 110, 223, 252, 533, 667, 680
LmnI GCTCC 1 cut(s) 907
LpnPI CCDG 9 cut(s) 209, 322, 513, 660, 702, 742, 744, 783, 810
LweI GCATC 1 cut(s) 715
MaeI CTAG 4 cut(s) 141, 620, 896, 925
MaeIII GTNAC 3 cut(s) 412, 509, 765
MalI GATC 7 cut(s) 69, 112, 225, 254, 535, 669, 682
MboI GATC 7 cut(s) 67, 110, 223, 252, 533, 667, 680
MboII GAAGA 6 cut(s) 85, 184, 247, 530, 661, 677
MflI RGATCY 2 cut(s) 533, 667
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 5 cut(s) 164, 573, 710, 771, 843
MmeI TCCRAC 1 cut(s) 695
MnlI CCTC 6 cut(s) 126, 128, 330, 357, 437, 866
MseI TTAA 4 cut(s) 27, 63, 282, 891
MslI CAYNNNNRTG 2 cut(s) 123, 267
MspR9I CCNGG 1 cut(s) 798
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 1 cut(s) 798
MwoI GCNNNNNNNGC 2 cut(s) 458, 826
NdeII GATC 7 cut(s) 67, 110, 223, 252, 533, 667, 680
NlaIII CATG 6 cut(s) 24, 266, 487, 564, 658, 687
NlaIV GGNNCC 1 cut(s) 535
NmuCI GTSAC 1 cut(s) 765
NspI RCATGY 1 cut(s) 24
OliI CACNNNNGTG 1 cut(s) 123
PaeR7I CTCGAG 1 cut(s) 384
PctI GAATGC 1 cut(s) 586
PfeI GAWTC 2 cut(s) 272, 556
PpuMI RGGWCCY 1 cut(s) 137
Psp5II RGGWCCY 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 796
PspGI CCWGG 1 cut(s) 796
PspN4I GGNNCC 1 cut(s) 535
PspPI GGNCC 1 cut(s) 137
PspPPI RGGWCCY 1 cut(s) 137
PspXI VCTCGAGB 1 cut(s) 384
PsuI RGATCY 2 cut(s) 533, 667
RseI CAYNNNNRTG 2 cut(s) 123, 267
SaqAI TTAA 4 cut(s) 27, 63, 282, 891
Sau3AI GATC 7 cut(s) 67, 110, 223, 252, 533, 667, 680
Sau96I GGNCC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 798
SduI GDGCHC 1 cut(s) 130
SfaNI GCATC 1 cut(s) 715
Sfr274I CTCGAG 1 cut(s) 384
SinI GGWCC 1 cut(s) 137
SlaI CTCGAG 1 cut(s) 384
SmiMI CAYNNNNRTG 2 cut(s) 123, 267
SmlI CTYRAG 1 cut(s) 384
SmoI CTYRAG 1 cut(s) 384
SpeI ACTAGT 1 cut(s) 895
Sse9I AATT 5 cut(s) 164, 573, 710, 771, 843
SspMI CTAG 4 cut(s) 141, 620, 896, 925
StyD4I CCNGG 1 cut(s) 796
TaaI ACNGT 3 cut(s) 350, 440, 743
TaqI TCGA 4 cut(s) 47, 275, 385, 855
TasI AATT 5 cut(s) 164, 573, 710, 771, 843
TfiI GAWTC 2 cut(s) 272, 556
Tru1I TTAA 4 cut(s) 27, 63, 282, 891
Tru9I TTAA 4 cut(s) 27, 63, 282, 891
TscAI CASTG 1 cut(s) 215
TseFI GTSAC 1 cut(s) 765
Tsp45I GTSAC 1 cut(s) 765
TspDTI ATGAA 8 cut(s) 85, 359, 411, 480, 656, 671, 836, 854
TspGWI ACGGA 1 cut(s) 387
TspRI CASTG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 137
XapI RAATTY 4 cut(s) 573, 710, 771, 843
XceI RCATGY 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XhoI CTCGAG 1 cut(s) 384
XspI CTAG 4 cut(s) 141, 620, 896, 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.