Rroxscaffold_1G00047020

B3 domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
66495933 .. 66498426
2494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00047020.1

Sequence Viewer

Length: 969 bp
ATGACTCCACCGACCGCAGACCGGTCCGTTCTACCCCCGGCCTCTGTCCGGCAAGCCCCGCCGCTCGTTGAGCCCCGAGCCGAGCTACGGCGTCGACGTCCGCACTTTAGAGAAAGTGCGGACCGTATACCGCCCAAGTTTACCAAGAACCAGATCCGACCATCACTTTGCAAATGTGTTCTTAGAGGCCCTAGTGGACAACGATGTGATGTGGAACTGGAAAGGAGAGAGAATGGCTTGTTCTTCCACAATCATGGTTGGCATCGCTTTGTGAAGGATCATCGTCTACAATTTGGGGACTTTCTGGTTTTCCATTATGATGGTGAATCGAAGTTTAAGGTTAAAATATATGATAGAACTTGTTGTGAGATAGATGTTGAAGTAGCCAAGAGGAGAAATGGCCTTCCTGCTGCTCCCTCGGCGAATGAAGGTTACCAATTAGCTTGGGTGAAAGATGAAATTGTTGACCTGAAAACCGAATACTACAACAGAGACGATACTGAAAATGCTGACAAGAGAGGCGTAGGCCCGCCGAGAGTTGAGGATGGTAAAGAAACATCAACTGGATCCATCATCTTCAAATCGGAGTATTCATGTTTTAAAGCAACTTTGAAGACAAGGTGTTCAAGATATAGGATGGCGATTCCAAAGGATCTAGCCGTGACCAAAGGTCTTATGAGTAAGAAGACTATAGAAATTGAAGACTCAACTGGGAGATTGTGGCCTGCTAAACTTGTGAGTCTCACGTCTAAAGAGAACAATAAGACTTGCAGCTTGGCCATGTCAACAGGTTGGGGAGAATGTTCTAAAGCCAACAAGATTGCAGTTGGGGACACCGTTGTTTTTGAGTTTGTTAAACAAAGTGTAATTCGACTTCATATTTTTAGAAAAGGTCTAGGAACAAGAGGAGGCAATAATAGGCCTAACCCTGTGGTACTTGATGCCCCCAACATCAAGAACTACAGCTAG

Protein Analysis

322

Amino Acids

36.54

Weight (kDa)

9.59

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 36 - 119 3.5e-15 B3 DNA binding domain
B3 PF02362 201 - 297 3.5e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 100
AccBSI CCGCTC 1 cut(s) 64
AccI GTMKAC 3 cut(s) 94, 127, 286
AciI CCGC 7 cut(s) 15, 59, 62, 101, 119, 131, 530
AclWI GGATC 5 cut(s) 148, 285, 561, 574, 660
AcoI YGGCCR 1 cut(s) 777
AcyI GRCGYC 2 cut(s) 91, 97
AfaI GTAC 1 cut(s) 936
AfiI CCNNNNNNNGG 3 cut(s) 21, 48, 87
AgeI ACCGGT 1 cut(s) 21
AgsI TTSAA 5 cut(s) 380, 580, 613, 627, 701
AhdI GACNNNNNGTC 1 cut(s) 669
AjiI CACGTC 1 cut(s) 747
AluBI AGCT 4 cut(s) 85, 443, 774, 966
AluI AGCT 4 cut(s) 85, 443, 774, 966
Alw26I GTCTC 2 cut(s) 486, 746
AlwI GGATC 5 cut(s) 148, 285, 561, 574, 660
Ama87I CYCGRG 1 cut(s) 75
AoxI GGCC 7 cut(s) 39, 187, 400, 526, 722, 777, 920
ApeKI GCWGC 2 cut(s) 410, 771
ArsI GACNNNNNNTTYG 2 cut(s) 150, 182
AsiGI ACCGGT 1 cut(s) 21
AspS9I GGNCC 4 cut(s) 24, 121, 188, 527
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 2 cut(s) 335, 460
AvaI CYCGRG 1 cut(s) 75
AvaII GGWCC 2 cut(s) 24, 121
BalI TGGCCA 1 cut(s) 779
BamHI GGATCC 1 cut(s) 566
BanII GRGCYC 1 cut(s) 75
BarI GAAGNNNNNNTAC 2 cut(s) 858, 890
BbsI GAAGAC 3 cut(s) 620, 692, 708
BbvI GCAGC 2 cut(s) 397, 783
BccI CCATC 5 cut(s) 169, 314, 539, 578, 631
BceAI ACGGC 2 cut(s) 104, 644
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 2 cut(s) 486, 746
BfaI CTAG 4 cut(s) 192, 656, 896, 967
BfmI CTRYAG 2 cut(s) 690, 961
BisI GCNGC 3 cut(s) 62, 411, 772
BlsI GCNGC 3 cut(s) 63, 412, 773
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 2 cut(s) 24, 121
BmeRI GACNNNNNGTC 1 cut(s) 669
BmeT110I CYCGRG 1 cut(s) 75
BmgBI CACGTC 1 cut(s) 747
BmgT120I GGNCC 4 cut(s) 24, 121, 188, 527
BmiI GGNNCC 1 cut(s) 568
BmrFI CCNGG 1 cut(s) 38
BmrI ACTGGG 1 cut(s) 720
BmsI GCATC 2 cut(s) 271, 931
BmuI ACTGGG 1 cut(s) 720
BpiI GAAGAC 3 cut(s) 620, 692, 708
BpuMI CCSGG 1 cut(s) 38
BsaHI GRCGYC 2 cut(s) 91, 97
BsaJI CCNNGG 2 cut(s) 36, 417
BsaWI WCCGGW 1 cut(s) 21
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 48, 87
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 3 cut(s) 222, 568, 715
BseDI CCNNGG 2 cut(s) 36, 417
BseGI GGATG 2 cut(s) 550, 642
BseLI CCNNNNNNNGG 3 cut(s) 21, 48, 87
BseNI ACTGG 3 cut(s) 222, 568, 715
BseRI GAGGAG 2 cut(s) 406, 921
BseXI GCAGC 2 cut(s) 397, 783
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 7 cut(s) 41, 189, 402, 528, 724, 779, 922
BshTI ACCGGT 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 3 cut(s) 22, 38, 49
BslFI GGGAC 2 cut(s) 311, 845
BslI CCNNNNNNNGG 3 cut(s) 21, 48, 87
BsmAI GTCTC 2 cut(s) 486, 746
BsmBI CGTCTC 1 cut(s) 486
BsmFI GGGAC 2 cut(s) 311, 845
BsnI GGCC 7 cut(s) 41, 189, 402, 528, 724, 779, 922
BsoBI CYCGRG 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 4 cut(s) 153, 277, 566, 652
BspACI CCGC 7 cut(s) 15, 59, 62, 101, 119, 131, 530
BspANI GGCC 7 cut(s) 41, 189, 402, 528, 724, 779, 922
BspLI GGNNCC 1 cut(s) 568
BspPI GGATC 5 cut(s) 148, 285, 561, 574, 660
BsrBI CCGCTC 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 21
BsrI ACTGG 3 cut(s) 222, 568, 715
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 36, 417
BssMI GATC 4 cut(s) 153, 277, 566, 652
BssNAI GTATAC 1 cut(s) 128
BssNI GRCGYC 2 cut(s) 91, 97
Bst1107I GTATAC 1 cut(s) 128
Bst4CI ACNGT 2 cut(s) 125, 838
BstACI GRCGYC 2 cut(s) 91, 97
BstC8I GCNNGC 3 cut(s) 54, 530, 726
BstDEI CTNAG 1 cut(s) 182
BstEII GGTNACC 1 cut(s) 431
BstF5I GGATG 2 cut(s) 550, 642
BstKTI GATC 4 cut(s) 156, 280, 569, 655
BstMAI GTCTC 2 cut(s) 486, 746
BstMBI GATC 4 cut(s) 153, 277, 566, 652
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 3 cut(s) 58, 70, 419
BstPI GGTNACC 1 cut(s) 431
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 2 cut(s) 690, 961
BstV1I GCAGC 2 cut(s) 397, 783
BstV2I GAAGAC 3 cut(s) 620, 692, 708
BstX2I RGATCY 3 cut(s) 153, 566, 652
BstXI CCANNNNNNTGG 2 cut(s) 254, 320
BstYI RGATCY 3 cut(s) 153, 566, 652
BstZ17I GTATAC 1 cut(s) 128
BsuRI GGCC 7 cut(s) 41, 189, 402, 528, 724, 779, 922
BtgZI GCGATG 1 cut(s) 248
BtrI CACGTC 1 cut(s) 747
BtsCI GGATG 2 cut(s) 550, 642
Cac8I GCNNGC 3 cut(s) 54, 530, 726
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 4 cut(s) 24, 121, 188, 527
CpoI CGGWCCG 2 cut(s) 24, 121
CseI GACGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 935
CspAI ACCGGT 1 cut(s) 21
CspI CGGWCCG 2 cut(s) 24, 121
CviAII CATG 3 cut(s) 254, 594, 781
CviQI GTAC 1 cut(s) 935
DdeI CTNAG 1 cut(s) 182
DpnI GATC 4 cut(s) 155, 279, 568, 654
DpnII GATC 4 cut(s) 153, 277, 566, 652
DraI TTTAAA 1 cut(s) 601
DriI GACNNNNNGTC 1 cut(s) 669
EaeI YGGCCR 1 cut(s) 777
Eam1105I GACNNNNNGTC 1 cut(s) 669
Eco147I AGGCCT 1 cut(s) 922
Eco24I GRGCYC 1 cut(s) 75
Eco47I GGWCC 2 cut(s) 24, 121
Eco88I CYCGRG 1 cut(s) 75
Eco91I GGTNACC 1 cut(s) 431
EcoO109I RGGNCCY 1 cut(s) 188
EcoO65I GGTNACC 1 cut(s) 431
EcoT38I GRGCYC 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 486
FaeI CATG 3 cut(s) 257, 597, 784
FaqI GGGAC 2 cut(s) 311, 845
FatI CATG 3 cut(s) 253, 593, 780
FauI CCCGC 2 cut(s) 66, 537
FblI GTMKAC 3 cut(s) 94, 127, 286
Fnu4HI GCNGC 3 cut(s) 62, 411, 772
FokI GGATG 2 cut(s) 557, 649
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 3 cut(s) 62, 411, 772
FspBI CTAG 4 cut(s) 192, 656, 896, 967
GluI GCNGC 3 cut(s) 62, 411, 772
HaeIII GGCC 7 cut(s) 41, 189, 402, 528, 724, 779, 922
HapII CCGG 3 cut(s) 22, 38, 49
HgaI GACGC 1 cut(s) 80
Hin1I GRCGYC 2 cut(s) 91, 97
Hin1II CATG 3 cut(s) 257, 597, 784
HincII GTYRAC 3 cut(s) 95, 466, 786
HindII GTYRAC 3 cut(s) 95, 466, 786
HinfI GANTC 5 cut(s) 4, 326, 643, 704, 739
HpaII CCGG 3 cut(s) 22, 38, 49
HphI GGTGA 2 cut(s) 335, 460
Hpy166II GTNNAC 7 cut(s) 95, 128, 141, 197, 287, 466, 786
Hpy188I TCNGA 2 cut(s) 158, 586
Hpy188III TCNNGA 2 cut(s) 627, 955
Hpy8I GTNNAC 7 cut(s) 95, 128, 141, 197, 287, 466, 786
Hpy99I CGWCG 2 cut(s) 96, 99
HpyAV CCTTC 3 cut(s) 268, 413, 422
HpyCH4III ACNGT 2 cut(s) 125, 838
HpyCH4IV ACGT 2 cut(s) 97, 746
HpyCH4V TGCA 3 cut(s) 171, 771, 824
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 70, 419
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 2 cut(s) 97, 746
Hsp92I GRCGYC 2 cut(s) 91, 97
Hsp92II CATG 3 cut(s) 257, 597, 784
Kzo9I GATC 4 cut(s) 153, 277, 566, 652
LmnI GCTCC 1 cut(s) 418
Lsp1109I GCAGC 2 cut(s) 397, 783
LweI GCATC 2 cut(s) 271, 931
MaeI CTAG 4 cut(s) 192, 656, 896, 967
MaeII ACGT 2 cut(s) 97, 746
MaeIII GTNAC 2 cut(s) 431, 661
MalI GATC 4 cut(s) 155, 279, 568, 654
MbiI CCGCTC 1 cut(s) 64
MboI GATC 4 cut(s) 153, 277, 566, 652
MboII GAAGA 5 cut(s) 235, 568, 625, 697, 713
MflI RGATCY 3 cut(s) 153, 566, 652
MhlI GDGCHC 1 cut(s) 75
MlsI TGGCCA 1 cut(s) 779
MluCI AATT 5 cut(s) 290, 437, 459, 696, 867
MluNI TGGCCA 1 cut(s) 779
MlyI GAGTC 2 cut(s) 698, 748
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 8 cut(s) 52, 179, 384, 427, 512, 535, 899, 902
Mox20I TGGCCA 1 cut(s) 779
MscI TGGCCA 1 cut(s) 779
MseI TTAA 4 cut(s) 336, 342, 600, 855
MslI CAYNNNNRTG 2 cut(s) 252, 318
Msp20I TGGCCA 1 cut(s) 779
MspI CCGG 3 cut(s) 22, 38, 49
MspR9I CCNGG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 58, 70, 419
NciI CCSGG 1 cut(s) 38
NdeII GATC 4 cut(s) 153, 277, 566, 652
NlaIII CATG 3 cut(s) 257, 597, 784
NlaIV GGNNCC 1 cut(s) 568
NmeAIII GCCGAG 3 cut(s) 106, 398, 558
NmuCI GTSAC 1 cut(s) 661
PceI AGGCCT 1 cut(s) 922
PcsI WCGNNNNNNNCGW 1 cut(s) 94
PfeI GAWTC 2 cut(s) 326, 643
PinAI ACCGGT 1 cut(s) 21
PkrI GCNGC 3 cut(s) 63, 412, 773
PleI GAGTC 2 cut(s) 698, 747
PpsI GAGTC 2 cut(s) 698, 747
PspEI GGTNACC 1 cut(s) 431
PspN4I GGNNCC 1 cut(s) 568
PspPI GGNCC 4 cut(s) 24, 121, 188, 527
PsuI RGATCY 3 cut(s) 153, 566, 652
RsaI GTAC 1 cut(s) 936
RsaNI GTAC 1 cut(s) 935
RseI CAYNNNNRTG 2 cut(s) 252, 318
Rsr2I CGGWCCG 2 cut(s) 24, 121
RsrII CGGWCCG 2 cut(s) 24, 121
SalI GTCGAC 1 cut(s) 93
SaqAI TTAA 4 cut(s) 336, 342, 600, 855
SatI GCNGC 3 cut(s) 62, 411, 772
Sau3AI GATC 4 cut(s) 153, 277, 566, 652
Sau96I GGNCC 4 cut(s) 24, 121, 188, 527
SchI GAGTC 2 cut(s) 698, 748
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 2 cut(s) 271, 931
SfcI CTRYAG 2 cut(s) 690, 961
SgrDI CGTCGACG 1 cut(s) 93
SinI GGWCC 2 cut(s) 24, 121
SmiMI CAYNNNNRTG 2 cut(s) 252, 318
Sse9I AATT 5 cut(s) 290, 437, 459, 696, 867
SseBI AGGCCT 1 cut(s) 922
SsiI CCGC 7 cut(s) 15, 59, 62, 101, 119, 131, 530
SspMI CTAG 4 cut(s) 192, 656, 896, 967
StuI AGGCCT 1 cut(s) 922
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 125, 838
TaiI ACGT 2 cut(s) 100, 749
TaqI TCGA 3 cut(s) 94, 329, 871
TasI AATT 5 cut(s) 290, 437, 459, 696, 867
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 2 cut(s) 326, 643
Tru1I TTAA 4 cut(s) 336, 342, 600, 855
Tru9I TTAA 4 cut(s) 336, 342, 600, 855
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 2 cut(s) 410, 771
Tsp45I GTSAC 1 cut(s) 661
TspDTI ATGAA 4 cut(s) 441, 471, 582, 866
TspGWI ACGGA 1 cut(s) 16
VpaK11BI GGWCC 2 cut(s) 24, 121
XmiI GTMKAC 3 cut(s) 94, 127, 286
XspI CTAG 4 cut(s) 192, 656, 896, 967
ZraI GACGTC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.