Rw7G031430

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000210
Physical Location & Seq
Forward (+)
45046448 .. 45049829
3382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031430.1

Sequence Viewer

Length: 966 bp
ATGAATTGGATTAATACTAAAAACGGGAAGCCAATTAACAAGTGTACGCCAAATAAACCATCATTTTTCAAGGTGCTGTTTGGTGACTTCTCTAAGCGTCTGCTTATACCACCTGAGTTTACCAAGAACTTCATTTGGAATGGGAGATCACCTCACGAATGTGCTCTTAGAGGTCCTAGTGGACAATGTTGGGCTGTGGAATTGGAAAGAACAGAAAATGGCTTGTTCTTCCAGAATGGATGGCAGTGTTTTGTGAAGGATCACCATTTAGAACTTGGGGATTTTTTGATCTTCAGATATGATGGTGAATCAAAGTTTACTGTCGTAATCTATGATAGAAGTGCCTGTGAGAAAGATGTAAAAGTAGCCAAGAGGAGAATGAACTGTTCTGTTTGTTTGAGGAATAACGGAAATCAAGCTCGAGTAAAAGATGAAGTTCTTGACCTTGTAACTGAAAATAACAAGAATATAGACAGTAAAGGCGAAACAGTCGTTGCTGGTAAAAAAGGTCGCAATGATGTCATGTCGGGAAAGAGACCTGCTAATGGTTACTTGGAAGACACAACAGATGGATCCATCTTGTTCAAATCGGAGAATTCATGTTTTCAAAGAATTTTGACGAAGCATTCAAAATATCACATTGGGTTTCCAAAAGAACTCGGTGTAGCTAAAGGTCTTATGAATGAGAAGACCATGAAGCTTGAAGATCCAACTGGGAGATCATGGCCTGTTAGTCTGCGTGCTTCTAAATTTTACAAAAAAGATGGCAGATTATATGACCGTTTAGACTTGACATCAGGTTGGTCACAAATTTGTGAAGCGAACAAGATTTCACTTGGGGATACCATTATTTTTGAGCTTGTCAAGCAAAGAGTGATGAAAATTCATATTATCAGAATAGGGAGATTGAGAGGCAAAGGATGTGCTGTTAGACTAGTTGCTCCTAATGTCAAAAGCTCAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

321

Amino Acids

36.53

Weight (kDa)

9.59

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 30 - 112 1.3e-16 B3 DNA binding domain
B3 PF02362 215 - 298 5e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 547
AclWI GGATC 4 cut(s) 267, 567, 580, 701
AcsI RAATTY 5 cut(s) 595, 612, 749, 810, 882
AcuI CTGAAG 1 cut(s) 277
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 545
AgsI TTSAA 5 cut(s) 70, 586, 608, 630, 704
AhlI ACTAGT 1 cut(s) 934
AleI CACNNNNGTG 1 cut(s) 159
AluBI AGCT 5 cut(s) 419, 668, 700, 859, 957
AluI AGCT 5 cut(s) 419, 668, 700, 859, 957
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 1 cut(s) 529
AlwI GGATC 4 cut(s) 267, 567, 580, 701
Ama87I CYCGRG 1 cut(s) 420
AoxI GGCC 1 cut(s) 725
ApoI RAATTY 5 cut(s) 595, 612, 749, 810, 882
AseI ATTAAT 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 4 cut(s) 95, 141, 254, 317
AvaI CYCGRG 1 cut(s) 420
AvaII GGWCC 1 cut(s) 173
BamHI GGATCC 1 cut(s) 572
BbsI GAAGAC 2 cut(s) 564, 695
Bbv12I GWGCWC 1 cut(s) 166
BccI CCATC 6 cut(s) 67, 234, 296, 563, 584, 758
BciVI GTATCC 1 cut(s) 835
BcoDI GTCTC 1 cut(s) 529
BcuI ACTAGT 1 cut(s) 934
BfaI CTAG 3 cut(s) 177, 935, 964
BfuAI ACCTGC 1 cut(s) 547
BfuI GTATCC 1 cut(s) 835
Bme18I GGWCC 1 cut(s) 173
BmeT110I CYCGRG 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 574
BmrI ACTGGG 1 cut(s) 723
BmuI ACTGGG 1 cut(s) 723
BpiI GAAGAC 2 cut(s) 564, 695
BplI GAGNNNNNCTC 2 cut(s) 136, 168
BsaI GGTCTC 1 cut(s) 529
Bsc4I CCNNNNNNNGG 1 cut(s) 545
Bse1I ACTGG 1 cut(s) 718
Bse3DI GCAATG 1 cut(s) 520
BseGI GGATG 2 cut(s) 245, 926
BseLI CCNNNNNNNGG 1 cut(s) 545
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 718
BseRI GAGGAG 1 cut(s) 388
BshFI GGCC 1 cut(s) 727
BsiHKAI GWGCWC 1 cut(s) 166
BsiHKCI CYCGRG 1 cut(s) 420
BslI CCNNNNNNNGG 1 cut(s) 545
BsmAI GTCTC 1 cut(s) 529
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 1 cut(s) 727
Bso31I GGTCTC 1 cut(s) 529
BsoBI CYCGRG 1 cut(s) 420
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 6 cut(s) 146, 259, 288, 572, 706, 719
BspANI GGCC 1 cut(s) 727
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 574
BspMI ACCTGC 1 cut(s) 547
BspPI GGATC 4 cut(s) 267, 567, 580, 701
BspTNI GGTCTC 1 cut(s) 529
BsrDI GCAATG 1 cut(s) 520
BsrI ACTGG 1 cut(s) 718
BssMI GATC 6 cut(s) 146, 259, 288, 572, 706, 719
Bst4CI ACNGT 5 cut(s) 322, 386, 476, 490, 782
BstC8I GCNNGC 1 cut(s) 741
BstDEI CTNAG 3 cut(s) 93, 114, 167
BstF5I GGATG 2 cut(s) 245, 926
BstKTI GATC 6 cut(s) 149, 262, 291, 575, 709, 722
BstMAI GTCTC 1 cut(s) 529
BstMBI GATC 6 cut(s) 146, 259, 288, 572, 706, 719
BstMWI GCNNNNNNNGC 1 cut(s) 865
BstV2I GAAGAC 2 cut(s) 564, 695
BstX2I RGATCY 2 cut(s) 572, 706
BstYI RGATCY 2 cut(s) 572, 706
BsuI GTATCC 1 cut(s) 835
BsuRI GGCC 1 cut(s) 727
BtsCI GGATG 2 cut(s) 245, 926
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 251
BveI ACCTGC 1 cut(s) 547
Cac8I GCNNGC 1 cut(s) 741
Cfr13I GGNCC 1 cut(s) 173
CseI GACGC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 45
CviAII CATG 4 cut(s) 523, 600, 694, 723
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 3 cut(s) 93, 114, 167
DpnI GATC 6 cut(s) 148, 261, 290, 574, 708, 721
DpnII GATC 6 cut(s) 146, 259, 288, 572, 706, 719
Eco31I GGTCTC 1 cut(s) 529
Eco47I GGWCC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 420
EcoO109I RGGNCCY 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 595
FaeI CATG 4 cut(s) 526, 603, 697, 726
FatI CATG 4 cut(s) 522, 599, 693, 722
FokI GGATG 2 cut(s) 252, 933
FspBI CTAG 3 cut(s) 177, 935, 964
HaeIII GGCC 1 cut(s) 727
HgaI GACGC 1 cut(s) 86
Hin1II CATG 4 cut(s) 526, 603, 697, 726
HindIII AAGCTT 1 cut(s) 698
HinfI GANTC 1 cut(s) 308
HphI GGTGA 4 cut(s) 95, 141, 254, 317
Hpy166II GTNNAC 4 cut(s) 45, 120, 182, 318
Hpy188I TCNGA 3 cut(s) 296, 592, 896
Hpy188III TCNNGA 4 cut(s) 155, 232, 440, 528
Hpy8I GTNNAC 4 cut(s) 45, 120, 182, 318
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 5 cut(s) 322, 386, 476, 490, 782
HpyF10VI GCNNNNNNNGC 1 cut(s) 865
HpyF3I CTNAG 3 cut(s) 93, 114, 167
Hsp92II CATG 4 cut(s) 526, 603, 697, 726
Kzo9I GATC 6 cut(s) 146, 259, 288, 572, 706, 719
LmnI GCTCC 1 cut(s) 946
LpnPI CCDG 8 cut(s) 126, 245, 358, 483, 552, 699, 741, 783
MaeI CTAG 3 cut(s) 177, 935, 964
MaeIII GTNAC 4 cut(s) 83, 448, 548, 804
MalI GATC 6 cut(s) 148, 261, 290, 574, 708, 721
MboI GATC 6 cut(s) 146, 259, 288, 572, 706, 719
MboII GAAGA 5 cut(s) 220, 283, 569, 700, 716
MflI RGATCY 2 cut(s) 572, 706
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 8 cut(s) 4, 33, 200, 595, 612, 749, 810, 882
MmeI TCCRAC 1 cut(s) 734
MnlI CCTC 5 cut(s) 162, 164, 366, 393, 905
MseI TTAA 2 cut(s) 12, 36
MslI CAYNNNNRTG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 625
MwoI GCNNNNNNNGC 1 cut(s) 865
NdeII GATC 6 cut(s) 146, 259, 288, 572, 706, 719
NlaIII CATG 4 cut(s) 526, 603, 697, 726
NlaIV GGNNCC 1 cut(s) 574
NmuCI GTSAC 2 cut(s) 83, 804
OliI CACNNNNGTG 1 cut(s) 159
PaeR7I CTCGAG 1 cut(s) 420
PctI GAATGC 1 cut(s) 625
PfeI GAWTC 1 cut(s) 308
PpuMI RGGWCCY 1 cut(s) 173
PshBI ATTAAT 1 cut(s) 12
Psp5II RGGWCCY 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 574
PspPI GGNCC 1 cut(s) 173
PspPPI RGGWCCY 1 cut(s) 173
PspXI VCTCGAGB 1 cut(s) 420
PsuI RGATCY 2 cut(s) 572, 706
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 2 cut(s) 12, 36
Sau3AI GATC 6 cut(s) 146, 259, 288, 572, 706, 719
Sau96I GGNCC 1 cut(s) 173
SduI GDGCHC 1 cut(s) 166
Sfr274I CTCGAG 1 cut(s) 420
SinI GGWCC 1 cut(s) 173
SlaI CTCGAG 1 cut(s) 420
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 420
SmoI CTYRAG 1 cut(s) 420
SpeI ACTAGT 1 cut(s) 934
Sse9I AATT 8 cut(s) 4, 33, 200, 595, 612, 749, 810, 882
SspMI CTAG 3 cut(s) 177, 935, 964
TaaI ACNGT 5 cut(s) 322, 386, 476, 490, 782
TaqI TCGA 1 cut(s) 421
TasI AATT 8 cut(s) 4, 33, 200, 595, 612, 749, 810, 882
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 2 cut(s) 12, 36
Tru9I TTAA 2 cut(s) 12, 36
TscAI CASTG 1 cut(s) 251
TseFI GTSAC 2 cut(s) 83, 804
Tsp45I GTSAC 2 cut(s) 83, 804
TspDTI ATGAA 9 cut(s) 17, 121, 395, 447, 588, 695, 710, 875, 893
TspGWI ACGGA 1 cut(s) 423
TspRI CASTG 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 173
VspI ATTAAT 1 cut(s) 12
XapI RAATTY 5 cut(s) 595, 612, 749, 810, 882
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XhoI CTCGAG 1 cut(s) 420
XspI CTAG 3 cut(s) 177, 935, 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.