FvH4_2g40960

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000210
Physical Location & Seq
Forward (+)
29076027 .. 29078748
2722 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40960.t4

Sequence Viewer

Length: 762 bp
ATGGCAGCTAGTAAAGAAGCATTTTTCCAGGTCCTCATTGGTGACTTCTGCCGTCACTTGAAAATGCCAACTGCGTTTGTGGACAAGTTGAGGGGAACACCGCCTTTCAAATGCGTGCTTAGAGATCCTGACGGACAAAGTTGGAATGTGACACTGAAAGAGAGAGCAGGTGGCTTGTTCTTTTGTACCGGTTGGCCGAAGTTTGTGAAGCATCATTGTTTGGATGAAGGGGACTTTTTGGTGTTGTATTATACTGGCAAGCATAAGTTTGATGTCAAAATTTATGATGAAAGTGCCTGTGAAATGGATTTAGAAGTATCCAAGAGGAGAAGACTCACTGATGGAAGTAGCGATCAAGTCATGTCTGGAAAGGCTGTAATTGAAGAAACACCATCTGGATTGACAGTGTTCAAGTCAAAGTATTCATGTTTTATGAAAACTTTGGTCAAATGTAAACTTTATGAGATGACGATTCCCCGGAGAATAGTGATAGCTGAGGGTCTTGAGAAAGGCAAGCCTGTAAAGCTTCAAGATCCAAAAAAGAGATCACAGATAGTTAACACTAATGTCACCAAAGATGGTCGTTTCAAGCTTACTAAAGGTTGGAGCCAAAGTTGCAGGGAGTTCGAGATTTCAATTGGAGACAATATTGTTTTCGAGTTCGTCAAGCCAAATGTGATTCTAGTTCATAACTTGAGAGGCAAAGTTGTGATACTTGAAGGTCCTAAAGTTGTGGACTCTAGCAACTACAAGAAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

254

Amino Acids

28.8

Weight (kDa)

9.34

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 41 - 117 1.7e-15 B3 DNA binding domain
B3 PF02362 174 - 244 1.5e-08 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 158
Acc36I ACCTGC 1 cut(s) 158
AciI CCGC 1 cut(s) 101
AclWI GGATC 2 cut(s) 119, 527
AcoI YGGCCR 1 cut(s) 194
AcsI RAATTY 1 cut(s) 279
AfaI GTAC 1 cut(s) 187
AgeI ACCGGT 1 cut(s) 188
AgsI TTSAA 8 cut(s) 61, 109, 383, 412, 530, 589, 636, 719
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 4 cut(s) 8, 494, 526, 592
AluI AGCT 4 cut(s) 8, 494, 526, 592
Alw26I GTCTC 1 cut(s) 636
AlwI GGATC 2 cut(s) 119, 527
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 279
AsiGI ACCGGT 1 cut(s) 188
AspS9I GGNCC 2 cut(s) 31, 722
AsuC2I CCSGG 1 cut(s) 478
AsuHPI GGTGA 2 cut(s) 53, 562
AvaII GGWCC 2 cut(s) 31, 722
BbsI GAAGAC 1 cut(s) 337
BbvCI CCTCAGC 1 cut(s) 495
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 335, 400, 572
BceAI ACGGC 1 cut(s) 36
BcgI CGANNNNNNTGC 2 cut(s) 607, 641
BciT130I CCWGG 1 cut(s) 29
BciVI GTATCC 1 cut(s) 328
BcnI CCSGG 1 cut(s) 478
BcoDI GTCTC 1 cut(s) 636
BfaI CTAG 3 cut(s) 9, 683, 741
BfuAI ACCTGC 1 cut(s) 158
BfuI GTATCC 1 cut(s) 328
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 29, 478
Bme18I GGWCC 2 cut(s) 31, 722
BmgT120I GGNCC 2 cut(s) 31, 722
BmiI GGNNCC 1 cut(s) 608
BmrFI CCNGG 2 cut(s) 29, 478
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 337
Bpu10I CCTNAGC 1 cut(s) 495
BpuEI CTTGAG 2 cut(s) 524, 715
BpuMI CCSGG 1 cut(s) 478
BsaJI CCNNGG 1 cut(s) 476
BsaWI WCCGGW 1 cut(s) 188
BsaXI ACNNNNNCTCC 2 cut(s) 598, 628
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 476
BseGI GGATG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 340
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 196
BshTI ACCGGT 1 cut(s) 188
BsiSI CCGG 2 cut(s) 189, 478
BslFI GGGAC 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 636
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 1 cut(s) 196
Bsp143I GATC 4 cut(s) 124, 352, 532, 545
BspACI CCGC 1 cut(s) 101
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 1 cut(s) 487
BspLI GGNNCC 1 cut(s) 608
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 2 cut(s) 119, 527
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 476
BssMI GATC 4 cut(s) 124, 352, 532, 545
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 406
BstC8I GCNNGC 3 cut(s) 116, 260, 515
BstDEI CTNAG 2 cut(s) 119, 495
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 4 cut(s) 127, 355, 535, 548
BstMAI GTCTC 1 cut(s) 636
BstMBI GATC 4 cut(s) 124, 352, 532, 545
BstMWI GCNNNNNNNGC 2 cut(s) 523, 615
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 2 cut(s) 27, 476
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 337
BstX2I RGATCY 2 cut(s) 124, 532
BstYI RGATCY 2 cut(s) 124, 532
BsuI GTATCC 1 cut(s) 328
BsuRI GGCC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 3 cut(s) 152, 336, 411
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 3 cut(s) 116, 260, 515
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 2 cut(s) 31, 722
Csp6I GTAC 1 cut(s) 186
CspAI ACCGGT 1 cut(s) 188
CviAII CATG 2 cut(s) 361, 426
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 2 cut(s) 119, 495
DpnI GATC 4 cut(s) 126, 354, 534, 547
DpnII GATC 4 cut(s) 124, 352, 532, 545
EaeI YGGCCR 1 cut(s) 194
Eco47I GGWCC 2 cut(s) 31, 722
EcoO109I RGGNCCY 2 cut(s) 31, 722
EcoRII CCWGG 1 cut(s) 27
FaeI CATG 2 cut(s) 364, 429
FaiI YATR 9 cut(s) 252, 264, 285, 362, 427, 434, 462, 690, 760
FaqI GGGAC 1 cut(s) 245
FatI CATG 2 cut(s) 360, 425
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 3 cut(s) 9, 683, 741
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 196
HapII CCGG 2 cut(s) 189, 478
Hin1II CATG 2 cut(s) 364, 429
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HindIII AAGCTT 2 cut(s) 524, 590
HinfI GANTC 4 cut(s) 333, 472, 679, 737
HpaI GTTAAC 1 cut(s) 559
HpaII CCGG 2 cut(s) 189, 478
HphI GGTGA 2 cut(s) 53, 562
Hpy166II GTNNAC 4 cut(s) 82, 455, 559, 736
Hpy188III TCNNGA 6 cut(s) 128, 366, 396, 503, 530, 628
Hpy8I GTNNAC 4 cut(s) 82, 455, 559, 736
HpyAV CCTTC 2 cut(s) 221, 713
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4V TGCA 1 cut(s) 618
HpyF10VI GCNNNNNNNGC 2 cut(s) 523, 615
HpyF3I CTNAG 2 cut(s) 119, 495
Hsp92II CATG 2 cut(s) 364, 429
KspAI GTTAAC 1 cut(s) 559
Kzo9I GATC 4 cut(s) 124, 352, 532, 545
LmnI GCTCC 1 cut(s) 606
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 220
MaeI CTAG 3 cut(s) 9, 683, 741
MaeIII GTNAC 4 cut(s) 41, 53, 148, 568
MalI GATC 4 cut(s) 126, 354, 534, 547
MboI GATC 4 cut(s) 124, 352, 532, 545
MboII GAAGA 2 cut(s) 342, 395
MfeI CAATTG 1 cut(s) 636
MflI RGATCY 2 cut(s) 124, 532
MluCI AATT 4 cut(s) 279, 378, 636, 755
MlyI GAGTC 2 cut(s) 327, 731
MmeI TCCRAC 2 cut(s) 122, 584
MnlI CCTC 5 cut(s) 44, 84, 318, 490, 692
MseI TTAA 1 cut(s) 558
MspI CCGG 2 cut(s) 189, 478
MspR9I CCNGG 2 cut(s) 29, 478
MunI CAATTG 1 cut(s) 636
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 523, 615
NciI CCSGG 1 cut(s) 478
NdeII GATC 4 cut(s) 124, 352, 532, 545
NlaIII CATG 2 cut(s) 364, 429
NlaIV GGNNCC 1 cut(s) 608
NmuCI GTSAC 4 cut(s) 41, 53, 148, 568
PaqCI CACCTGC 1 cut(s) 158
PfeI GAWTC 2 cut(s) 472, 679
PinAI ACCGGT 1 cut(s) 188
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 327, 731
PpsI GAGTC 2 cut(s) 327, 731
PpuMI RGGWCCY 2 cut(s) 31, 722
Psp5II RGGWCCY 2 cut(s) 31, 722
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 608
PspPI GGNCC 2 cut(s) 31, 722
PspPPI RGGWCCY 2 cut(s) 31, 722
PsuI RGATCY 2 cut(s) 124, 532
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 4 cut(s) 124, 352, 532, 545
Sau96I GGNCC 2 cut(s) 31, 722
SchI GAGTC 2 cut(s) 327, 731
ScrFI CCNGG 2 cut(s) 29, 478
SetI ASST 8 cut(s) 10, 33, 172, 496, 528, 594, 604, 724
SfaNI GCATC 1 cut(s) 220
SinI GGWCC 2 cut(s) 31, 722
SmlI CTYRAG 2 cut(s) 503, 694
SmoI CTYRAG 2 cut(s) 503, 694
Sse9I AATT 4 cut(s) 279, 378, 636, 755
SsiI CCGC 1 cut(s) 101
SspI AATATT 1 cut(s) 649
SspMI CTAG 3 cut(s) 9, 683, 741
StyD4I CCNGG 2 cut(s) 27, 476
TaaI ACNGT 1 cut(s) 406
TaqI TCGA 2 cut(s) 627, 657
TasI AATT 4 cut(s) 279, 378, 636, 755
TfiI GAWTC 2 cut(s) 472, 679
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TscAI CASTG 3 cut(s) 159, 343, 411
TseFI GTSAC 4 cut(s) 41, 53, 148, 568
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 4 cut(s) 41, 53, 148, 568
TspDTI ATGAA 5 cut(s) 240, 303, 414, 449, 677
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 3 cut(s) 159, 343, 411
VpaK11BI GGWCC 2 cut(s) 31, 722
XapI RAATTY 1 cut(s) 279
XcmI CCANNNNNNNNNTGG 1 cut(s) 35
XspI CTAG 3 cut(s) 9, 683, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.