Rh1AG045500

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000210
Physical Location & Seq
Forward (+)
7771084 .. 7775402
4319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG045500.1

Sequence Viewer

Length: 249 bp
ATGGACATGGAAGCAGCCAAGACAAAGAGAAGTACTGGCGATCTTGATGGTCAAAGGAGGGATTATGTCATGCCTGGGGAGACAAGAATCAGAATCATTGAGTTCAAATCAGAGCATTTTTGCTTTAAGAGAACTATGGAGAAGCACAGACTGTATCAGCTGGTGAGTTCCAAGTCTGGAGTACGTGCTGAGCTGATACCAACGATGTGGCTGCTACCAAGCTATTTAACCTCCATCTTGGATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

82

Amino Acids

9.6

Weight (kDa)

9.25

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 34, 183
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 3 cut(s) 160, 193, 222
AluI AGCT 3 cut(s) 160, 193, 222
Alw26I GTCTC 1 cut(s) 74
ApeKI GCWGC 2 cut(s) 14, 211
AsuHPI GGTGA 1 cut(s) 175
BbvI GCAGC 2 cut(s) 26, 198
BccI CCATC 2 cut(s) 41, 242
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BciT130I CCWGG 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 74
BisI GCNGC 2 cut(s) 15, 212
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 2 cut(s) 16, 213
BmcAI AGTACT 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 40
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 74
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 40
BseXI GCAGC 2 cut(s) 26, 198
BsmAI GTCTC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 40
Bsp1720I GCTNAGC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 181
BsrI ACTGG 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 153
BstBAI YACGTR 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 189
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 1 cut(s) 40
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 26, 198
BstXI CCANNNNNNTGG 1 cut(s) 207
Csp6I GTAC 2 cut(s) 33, 182
CviAII CATG 2 cut(s) 7, 70
CviJI RGCY 5 cut(s) 17, 160, 193, 211, 222
CviKI_1 RGCY 5 cut(s) 17, 160, 193, 211, 222
CviQI GTAC 2 cut(s) 33, 182
DdeI CTNAG 1 cut(s) 189
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 73
FaeI CATG 2 cut(s) 10, 73
FaiI YATR 5 cut(s) 8, 66, 71, 137, 247
FatI CATG 2 cut(s) 6, 69
Fnu4HI GCNGC 2 cut(s) 15, 212
Fsp4HI GCNGC 2 cut(s) 15, 212
GluI GCNGC 2 cut(s) 15, 212
GsuI CTGGAG 1 cut(s) 198
Hin1II CATG 2 cut(s) 10, 73
HinfI GANTC 3 cut(s) 87, 93, 242
HphI GGTGA 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 92, 112
Hpy188III TCNNGA 2 cut(s) 44, 177
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4IV ACGT 1 cut(s) 184
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 2 cut(s) 10, 73
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 5 cut(s) 21, 60, 87, 146, 162
Lsp1109I GCAGC 2 cut(s) 26, 198
MaeII ACGT 1 cut(s) 184
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MnlI CCTC 2 cut(s) 51, 241
MseI TTAA 2 cut(s) 126, 227
MspA1I CMGCKG 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 75
NdeII GATC 1 cut(s) 40
NlaIII CATG 2 cut(s) 10, 73
PfeI GAWTC 3 cut(s) 87, 93, 242
PkrI GCNGC 2 cut(s) 16, 213
Ppu21I YACGTR 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 160
RsaI GTAC 2 cut(s) 34, 183
RsaNI GTAC 2 cut(s) 33, 182
SaqAI TTAA 2 cut(s) 126, 227
SatI GCNGC 2 cut(s) 15, 212
Sau3AI GATC 1 cut(s) 40
ScaI AGTACT 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 75
SetI ASST 5 cut(s) 162, 187, 195, 224, 233
StyD4I CCNGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 153
TaiI ACGT 1 cut(s) 187
TatI WGTACW 1 cut(s) 32
TfiI GAWTC 3 cut(s) 87, 93, 242
Tru1I TTAA 2 cut(s) 126, 227
Tru9I TTAA 2 cut(s) 126, 227
TseI GCWGC 2 cut(s) 14, 211
TspDTI ATGAA 1 cut(s) 234
ZrmI AGTACT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.