Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0000210

Physical Location & Seq

Genomic Coordinates Forward (+)

2627011 .. 2629386

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCACATGCATGGTGGGTGCACTTGTAATTCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTCAATAAATTTGTGACTGTTTATGTAATTCACATATATAGTTTGACAAAGATCACCAGCCAGCTAGCAGAGTTGGCATCAGCTTCAATCCCTCACCTCAAATTGATTGGGGAAGTGAAGCTTTTCCGCTCAAATGGCGAGGAATTCAACAAATCCTTCACGGAGAGTGATCGATCCTTTTTCAAGCCCCTAGTTCATGATGACTTCTCTCGGCATTTGTGTCTGCCACCTTTATTCATGGAGAATTTCAATGGACGGCCTCCCTGCAAATGCACTCTTAGAGGCCCAAGTGGAGAATCGTGGACAGTAGGTTTGGAAGGAAGAGAGGATGGAAAATTCTTCTTCCGCAAGGGTTGGCAGAATTTCGTTGAGGATCATCTCTTAGAAATCGGTAATTTCTTGGTTTTTAAGTACGATGGCGACACAAAGTTTGATGTCAAAATCTATAATCCAACTGGATGTGAAAAGGAGGAAGCTGTAGCTGCCAAGAAGACAACTGGAAATCAAGCTAGTATTCGTAACCGAAGGAAAAGCATGTTGTACAAGCCTGCTGATGTGAAAGAAGCATCAGATGGACACATCGCATTCAGATCAAAGTATAAAACATGCTTCAAAGCAACTGTGCCGAAGATTCCTTATCGAATGACTGTCCCCAAGAAGCTAGCTGTAGCAAAAGGTCTCATTGAAAAGGAGAGGGTGAGGCTTATAGATCCGGATGGGAAAGCATGGAAAGTTAAGCTCCGGGTCGATGAGATAAAATCTTGTGGCAGTCGTGTGCTCATGACGGAAGGGTTGATGAAATGTTGGCATGCGAACAACGTTTCACCCGGGGACACCGCCGTGTTTGAGCTTGTCAACGAAAAGAGAAGTGAAATGAAGATTCATTTTTTCAGAGCTGAAGCCGGAGGAAAGAGGCCTACTGTTGTGCTTGAACTTGATGCCTCTGACTCTCTTGTGGAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

344

Amino Acids

38.71

Weight (kDa)

9.19

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66980
fragaria_vesca	FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica	MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica	Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis	pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis	RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata	RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora	Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii	Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa	Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha	Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana	Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	195
AccIII	TCCGGA	1 cut(s)	778
AciI	CCGC	3 cut(s)	193, 412, 903
AclI	AACGTT	1 cut(s)	885
AclWI	GGATC	3 cut(s)	234, 447, 770
AcsI	RAATTY	5 cut(s)	74, 209, 310, 401, 427
AcuI	CTGAAG	1 cut(s)	984
AfaI	GTAC	2 cut(s)	479, 608
AgsI	TTSAA	8 cut(s)	70, 153, 214, 250, 316, 679, 752, 998
AleI	CACNNNNGTG	1 cut(s)	905
Alw21I	GWGCWC	2 cut(s)	23, 846
Alw26I	GTCTC	1 cut(s)	749
Alw44I	GTGCAC	1 cut(s)	19
AlwI	GGATC	3 cut(s)	234, 447, 770
Ama87I	CYCGRG	1 cut(s)	893
Aor13HI	TCCGGA	1 cut(s)	778
AoxI	GGCC	3 cut(s)	323, 349, 980
ApaLI	GTGCAC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	5 cut(s)	74, 209, 310, 401, 427
ArsI	GACNNNNNNTTYG	4 cut(s)	361, 393, 479, 511
Asp700I	GAANNNNTTC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	3 cut(s)	809, 894, 895
AsuHPI	GGTGA	4 cut(s)	112, 152, 775, 882
AsuNHI	GCTAGC	2 cut(s)	130, 727
AvaI	CYCGRG	1 cut(s)	893
BaeGI	GKGCMC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	563
Bbv12I	GWGCWC	2 cut(s)	23, 846
BbvI	GCAGC	1 cut(s)	535
BccI	CCATC	4 cut(s)	389, 476, 632, 776
BceAI	ACGGC	2 cut(s)	338, 890
BcnI	CCSGG	3 cut(s)	809, 894, 895
BcoDI	GTCTC	1 cut(s)	749
BfaI	CTAG	4 cut(s)	131, 257, 576, 728
BfmI	CTRYAG	2 cut(s)	543, 732
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
Bme1390I	CCNGG	3 cut(s)	809, 894, 895
BmeT110I	CYCGRG	1 cut(s)	893
BmgT120I	GGNCC	1 cut(s)	350
BmrFI	CCNGG	3 cut(s)	809, 894, 895
BmsI	GCATC	3 cut(s)	152, 641, 994
BmtI	GCTAGC	2 cut(s)	134, 731
BpiI	GAAGAC	1 cut(s)	563
BpuMI	CCSGG	3 cut(s)	809, 894, 895
Bsa29I	ATCGAT	1 cut(s)	238
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	2 cut(s)	893, 894
BsaWI	WCCGGW	1 cut(s)	778
Bse1I	ACTGG	2 cut(s)	526, 568
BseAI	TCCGGA	1 cut(s)	778
BseCI	ATCGAT	1 cut(s)	238
BseDI	CCNNGG	2 cut(s)	893, 894
BseGI	GGATG	3 cut(s)	400, 530, 787
BseNI	ACTGG	2 cut(s)	526, 568
BseSI	GKGCMC	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	535
BshFI	GGCC	3 cut(s)	325, 351, 982
BshVI	ATCGAT	1 cut(s)	238
BsiHKAI	GWGCWC	2 cut(s)	23, 846
BsiHKCI	CYCGRG	1 cut(s)	893
BsiSI	CCGG	4 cut(s)	779, 808, 894, 969
BslFI	GGGAC	2 cut(s)	701, 911
BsmAI	GTCTC	1 cut(s)	749
BsmFI	GGGAC	2 cut(s)	701, 911
BsmI	GAATGC	1 cut(s)	650
BsnI	GGCC	3 cut(s)	325, 351, 982
Bso31I	GGTCTC	1 cut(s)	749
BsoBI	CYCGRG	1 cut(s)	893
Bsp1286I	GDGCHC	2 cut(s)	23, 846
Bsp13I	TCCGGA	1 cut(s)	778
Bsp1407I	TGTACA	1 cut(s)	606
Bsp143I	GATC	6 cut(s)	117, 235, 239, 439, 656, 775
BspACI	CCGC	3 cut(s)	193, 412, 903
BspANI	GGCC	3 cut(s)	325, 351, 982
BspDI	ATCGAT	1 cut(s)	238
BspEI	TCCGGA	1 cut(s)	778
BspHI	TCATGA	2 cut(s)	262, 846
BspOI	GCTAGC	2 cut(s)	134, 731
BspPI	GGATC	3 cut(s)	234, 447, 770
BspTNI	GGTCTC	1 cut(s)	749
BsrBI	CCGCTC	1 cut(s)	195
BsrGI	TGTACA	1 cut(s)	606
BsrI	ACTGG	2 cut(s)	526, 568
BssECI	CCNNGG	2 cut(s)	893, 894
BssMI	GATC	6 cut(s)	117, 235, 239, 439, 656, 775
Bst4CI	ACNGT	5 cut(s)	85, 373, 688, 715, 988
Bst6I	CTCTTC	1 cut(s)	382
BstAUI	TGTACA	1 cut(s)	606
BstC8I	GCNNGC	5 cut(s)	128, 132, 615, 729, 876
BstDEI	CTNAG	2 cut(s)	344, 448
BstF5I	GGATG	3 cut(s)	400, 530, 787
BstKTI	GATC	6 cut(s)	120, 238, 242, 442, 659, 778
BstMAI	GTCTC	1 cut(s)	749
BstMBI	GATC	6 cut(s)	117, 235, 239, 439, 656, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 201, 548
BstNSI	RCATGY	4 cut(s)	10, 604, 675, 878
BstSCI	CCNGG	3 cut(s)	807, 892, 893
BstSFI	CTRYAG	2 cut(s)	543, 732
BstSLI	GKGCMC	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	535
BstV2I	GAAGAC	1 cut(s)	563
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
Bsu15I	ATCGAT	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	325, 351, 982
BsuTUI	ATCGAT	1 cut(s)	238
BtgZI	GCGATG	1 cut(s)	631
BtsCI	GGATG	3 cut(s)	400, 530, 787
Cac8I	GCNNGC	5 cut(s)	128, 132, 615, 729, 876
CciI	TCATGA	2 cut(s)	262, 846
Cfr13I	GGNCC	1 cut(s)	350
Cfr9I	CCCGGG	1 cut(s)	893
ClaI	ATCGAT	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	478, 607
CviAII	CATG	9 cut(s)	7, 11, 263, 304, 601, 672, 792, 847, 875
CviQI	GTAC	2 cut(s)	478, 607
DdeI	CTNAG	2 cut(s)	344, 448
DpnI	GATC	6 cut(s)	119, 237, 241, 441, 658, 777
DpnII	GATC	6 cut(s)	117, 235, 239, 439, 656, 775
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
Eco147I	AGGCCT	1 cut(s)	982
Eco31I	GGTCTC	1 cut(s)	749
Eco57I	CTGAAG	1 cut(s)	984
Eco88I	CYCGRG	1 cut(s)	893
EcoRI	GAATTC	1 cut(s)	209
EcoT22I	ATGCAT	1 cut(s)	12
FaeI	CATG	9 cut(s)	10, 14, 266, 307, 604, 675, 795, 850, 878
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	2 cut(s)	701, 911
FatI	CATG	9 cut(s)	6, 10, 262, 303, 600, 671, 791, 846, 874
Fnu4HI	GCNGC	1 cut(s)	549
FokI	GGATG	3 cut(s)	407, 537, 794
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	4 cut(s)	131, 257, 576, 728
GluI	GCNGC	1 cut(s)	549
HaeIII	GGCC	3 cut(s)	325, 351, 982
HapII	CCGG	4 cut(s)	779, 808, 894, 969
Hin1II	CATG	9 cut(s)	10, 14, 266, 307, 604, 675, 795, 850, 878
HincII	GTYRAC	1 cut(s)	922
HindII	GTYRAC	1 cut(s)	922
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	4 cut(s)	362, 697, 946, 1013
HpaII	CCGG	4 cut(s)	779, 808, 894, 969
HphI	GGTGA	4 cut(s)	112, 152, 775, 882
Hpy166II	GTNNAC	3 cut(s)	21, 369, 922
Hpy188I	TCNGA	4 cut(s)	637, 656, 959, 1012
Hpy188III	TCNNGA	3 cut(s)	263, 779, 847
Hpy8I	GTNNAC	3 cut(s)	21, 369, 922
HpyAV	CCTTC	5 cut(s)	76, 232, 377, 585, 848
HpyCH4III	ACNGT	5 cut(s)	85, 373, 688, 715, 988
HpyCH4IV	ACGT	1 cut(s)	885
HpyCH4V	TGCA	5 cut(s)	4, 10, 21, 333, 339
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 201, 548
HpyF3I	CTNAG	2 cut(s)	344, 448
HpySE526I	ACGT	1 cut(s)	885
Hsp92II	CATG	9 cut(s)	10, 14, 266, 307, 604, 675, 795, 850, 878
Kpn2I	TCCGGA	1 cut(s)	778
Kzo9I	GATC	6 cut(s)	117, 235, 239, 439, 656, 775
LmnI	GCTCC	1 cut(s)	810
Lsp1109I	GCAGC	1 cut(s)	535
LweI	GCATC	3 cut(s)	152, 641, 994
MaeI	CTAG	4 cut(s)	131, 257, 576, 728
MaeII	ACGT	1 cut(s)	885
MaeIII	GTNAC	2 cut(s)	79, 584
MalI	GATC	6 cut(s)	119, 237, 241, 441, 658, 777
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	6 cut(s)	117, 235, 239, 439, 656, 775
MboII	GAAGA	6 cut(s)	397, 399, 400, 568, 706, 955
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	2 cut(s)	23, 846
MluCI	AATT	9 cut(s)	28, 74, 93, 167, 209, 310, 401, 427, 460
MlyI	GAGTC	1 cut(s)	1007
MmeI	TCCRAC	1 cut(s)	542
Mph1103I	ATGCAT	1 cut(s)	12
MroI	TCCGGA	1 cut(s)	778
MroXI	GAANNNNTTC	1 cut(s)	188
MseI	TTAA	2 cut(s)	474, 801
MslI	CAYNNNNRTG	2 cut(s)	9, 905
MspI	CCGG	4 cut(s)	779, 808, 894, 969
MspR9I	CCNGG	3 cut(s)	809, 894, 895
Mva1269I	GAATGC	1 cut(s)	650
MwoI	GCNNNNNNNGC	3 cut(s)	140, 201, 548
NciI	CCSGG	3 cut(s)	809, 894, 895
NdeII	GATC	6 cut(s)	117, 235, 239, 439, 656, 775
NheI	GCTAGC	2 cut(s)	130, 727
NlaIII	CATG	9 cut(s)	10, 14, 266, 307, 604, 675, 795, 850, 878
NmeAIII	GCCGAG	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	79
NsiI	ATGCAT	1 cut(s)	12
NspI	RCATGY	4 cut(s)	10, 604, 675, 878
OliI	CACNNNNGTG	1 cut(s)	905
PaeI	GCATGC	1 cut(s)	878
PagI	TCATGA	2 cut(s)	262, 846
PceI	AGGCCT	1 cut(s)	982
PctI	GAATGC	1 cut(s)	650
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	3 cut(s)	362, 697, 946
PkrI	GCNGC	1 cut(s)	550
PleI	GAGTC	1 cut(s)	1007
PpsI	GAGTC	1 cut(s)	1007
Psp1406I	AACGTT	1 cut(s)	885
PspPI	GGNCC	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	775
RsaI	GTAC	2 cut(s)	479, 608
RsaNI	GTAC	2 cut(s)	478, 607
RseI	CAYNNNNRTG	2 cut(s)	9, 905
SaqAI	TTAA	2 cut(s)	474, 801
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	6 cut(s)	117, 235, 239, 439, 656, 775
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	1 cut(s)	1007
ScrFI	CCNGG	3 cut(s)	809, 894, 895
SduI	GDGCHC	2 cut(s)	23, 846
SfaNI	GCATC	3 cut(s)	152, 641, 994
SfcI	CTRYAG	2 cut(s)	543, 732
SmaI	CCCGGG	1 cut(s)	895
SmiMI	CAYNNNNRTG	2 cut(s)	9, 905
SphI	GCATGC	1 cut(s)	878
Sse9I	AATT	9 cut(s)	28, 74, 93, 167, 209, 310, 401, 427, 460
SseBI	AGGCCT	1 cut(s)	982
SsiI	CCGC	3 cut(s)	193, 412, 903
SspMI	CTAG	4 cut(s)	131, 257, 576, 728
StuI	AGGCCT	1 cut(s)	982
StyD4I	CCNGG	3 cut(s)	807, 892, 893
TaaI	ACNGT	5 cut(s)	85, 373, 688, 715, 988
TaiI	ACGT	1 cut(s)	888
TaqI	TCGA	3 cut(s)	238, 706, 813
TasI	AATT	9 cut(s)	28, 74, 93, 167, 209, 310, 401, 427, 460
TatI	WGTACW	1 cut(s)	606
TfiI	GAWTC	3 cut(s)	362, 697, 946
Tru1I	TTAA	2 cut(s)	474, 801
Tru9I	TTAA	2 cut(s)	474, 801
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	5 cut(s)	251, 292, 878, 938, 956
TspGWI	ACGGA	2 cut(s)	242, 866
TspMI	CCCGGG	1 cut(s)	893
VneI	GTGCAC	1 cut(s)	19
XapI	RAATTY	5 cut(s)	74, 209, 310, 401, 427
XceI	RCATGY	4 cut(s)	10, 604, 675, 878
XmaI	CCCGGG	1 cut(s)	893
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	4 cut(s)	131, 257, 576, 728
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.