Rroxscaffold_7G00178360

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000210
Physical Location & Seq
Reverse (-)
18080688 .. 18083400
2713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00178360.1

Sequence Viewer

Length: 261 bp
ATGCTGACAAAAGAAGGGTATATTCCGATGGAACTAGTCATAGCGGAAGGTTTAAAGGCTGGGATGGCCATAAAGATTCAAGATACATTTGGGATGTCATGGCATCTTAGACTCCGTGCTAACCATGATCGTGTGCTGATGAGGTCGGGCTTGTCAAAGATATGCAAAGCAAACAAAACTTCACATGGGGACACTCTGATCTTTGAGTTTGTCAAGCCAAGAGTTGTGCAACTTCATATTATCAGAGCAGGAGCTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

86

Amino Acids

9.72

Weight (kDa)

9.92

Isoelectric Point (pI)

24.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 7 - 81 1e-10 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 66
AgsI TTSAA 1 cut(s) 80
AhlI ACTAGT 1 cut(s) 34
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
AoxI GGCC 1 cut(s) 66
BalI TGGCCA 1 cut(s) 68
BccI CCATC 2 cut(s) 22, 58
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 2 cut(s) 35, 259
BmsI GCATC 1 cut(s) 112
BseGI GGATG 2 cut(s) 69, 99
BseYI CCCAGC 1 cut(s) 59
BshFI GGCC 1 cut(s) 68
BslFI GGGAC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 127, 198
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 68
BssMI GATC 2 cut(s) 127, 198
BstDEI CTNAG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 69, 99
BstKTI GATC 2 cut(s) 130, 201
BstMBI GATC 2 cut(s) 127, 198
BstMWI GCNNNNNNNGC 1 cut(s) 65
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 2 cut(s) 69, 99
CviAII CATG 3 cut(s) 99, 125, 185
CviJI RGCY 5 cut(s) 59, 68, 150, 217, 254
CviKI_1 RGCY 5 cut(s) 59, 68, 150, 217, 254
DdeI CTNAG 1 cut(s) 107
DpnI GATC 2 cut(s) 129, 200
DpnII GATC 2 cut(s) 127, 198
DraI TTTAAA 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 66
FaeI CATG 3 cut(s) 102, 128, 188
FaiI YATR 8 cut(s) 21, 41, 71, 100, 126, 163, 186, 237
FaqI GGGAC 1 cut(s) 203
FatI CATG 3 cut(s) 98, 124, 184
FokI GGATG 2 cut(s) 76, 106
FspBI CTAG 2 cut(s) 35, 259
GsaI CCCAGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 68
Hin1II CATG 3 cut(s) 102, 128, 188
HinfI GANTC 2 cut(s) 76, 111
Hpy188I TCNGA 3 cut(s) 27, 198, 245
Hpy188III TCNNGA 1 cut(s) 80
HpyAV CCTTC 2 cut(s) 8, 41
HpyCH4V TGCA 2 cut(s) 165, 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 107
Hsp92II CATG 3 cut(s) 102, 128, 188
Kzo9I GATC 2 cut(s) 127, 198
LmnI GCTCC 1 cut(s) 251
LpnPI CCDG 2 cut(s) 45, 234
LweI GCATC 1 cut(s) 112
MaeI CTAG 2 cut(s) 35, 259
MalI GATC 2 cut(s) 129, 200
MboI GATC 2 cut(s) 127, 198
MlsI TGGCCA 1 cut(s) 68
MluNI TGGCCA 1 cut(s) 68
MlyI GAGTC 1 cut(s) 105
MnlI CCTC 1 cut(s) 135
Mox20I TGGCCA 1 cut(s) 68
MscI TGGCCA 1 cut(s) 68
MseI TTAA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 129
Msp20I TGGCCA 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 2 cut(s) 127, 198
NlaIII CATG 3 cut(s) 102, 128, 188
PfeI GAWTC 1 cut(s) 76
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PspFI CCCAGC 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 1 cut(s) 53
Sau3AI GATC 2 cut(s) 127, 198
SchI GAGTC 1 cut(s) 105
SetI ASST 3 cut(s) 52, 146, 256
SfaNI GCATC 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 129
SpeI ACTAGT 1 cut(s) 34
SsiI CCGC 1 cut(s) 44
SspMI CTAG 2 cut(s) 35, 259
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 224
TspGWI ACGGA 1 cut(s) 104
XspI CTAG 2 cut(s) 35, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.