RchiOBHm_Chr6g0299611

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000210
Physical Location & Seq
Reverse (-)
60688979 .. 60692001
3023 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26902

Sequence Viewer

Length: 699 bp
ATGCCAACTGCGTTTGTGGACAAGTTAAGGGGAACACCACCTTGCAAATGTGTTCTTAGAGGTCCCAATGGACAAAGTTGGAATGTGGCACTGGAAGAGAGAGAAAGTGGTTTGTTCTTCTGTAAGGGTTGGCGGAAATTTGTGAAGTATCATTGTTTGGAAGAAGGGGACTTTTTGGTCTTCCATTATACTGGCAAACTTAAGTTTGATGTCACAATTTATGATGAAAGTGCCTGTGAAATGGATTTAGAAGTATCCAAGAGGAGAAGTCTCGCTGATGGTAGTAGCGATCAAGTCATGTCTGGGAAGGCTGTAATTGAAGAAACACCAACTGGATTGACGGTGTTCCAGTCAAGGAATTCATGTTTCATGAAAACTTTGGAGACATTTAGACGTTATGATCTGACGATTCCGCAGAAAATAGTGAAAGCTGAGGGTCTTAAGGGACACATGTCTCTAACGCTTCGAGATCCAGAAGAGAGATCACGGATTGTTGAGACTGATGTCACCGTAGATAAACGTTTGAAGCTGACAAAAGGTTGGTGCCAAGGATGCAGGGAGTTCAATATCTCAATTGGGGACAAGGTTGTTTTCGAGTTTGTCAAGCCAAATGTGATTCAACTTCATATCTTCAGAGGCAAAGATGTGCTACTCTCAGGTCCTAAAGTTGTGGACTCTAGCAACTATAGGCAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

232

Amino Acids

26.49

Weight (kDa)

8.72

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 2 - 74 1e-14 B3 DNA binding domain
B3 PF02362 124 - 212 1.5e-08 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 543
AciI CCGC 2 cut(s) 133, 413
AclI AACGTT 1 cut(s) 520
AclWI GGATC 1 cut(s) 464
AcsI RAATTY 2 cut(s) 137, 358
AcuI CTGAAG 1 cut(s) 616
AflII CTTAAG 2 cut(s) 200, 440
AflIII ACRYGT 1 cut(s) 450
AgsI TTSAA 4 cut(s) 320, 526, 565, 620
AluBI AGCT 2 cut(s) 431, 529
AluI AGCT 2 cut(s) 431, 529
Alw26I GTCTC 4 cut(s) 275, 377, 459, 491
AlwI GGATC 1 cut(s) 464
ApoI RAATTY 2 cut(s) 137, 358
AspS9I GGNCC 2 cut(s) 62, 659
AsuHPI GGTGA 1 cut(s) 499
AvaII GGWCC 2 cut(s) 62, 659
BanI GGYRCC 1 cut(s) 543
BbsI GAAGAC 1 cut(s) 172
BbvCI CCTCAGC 1 cut(s) 432
BccI CCATC 1 cut(s) 272
BciVI GTATCC 1 cut(s) 265
BcoDI GTCTC 4 cut(s) 275, 377, 459, 491
BfaI CTAG 2 cut(s) 678, 697
BfmI CTRYAG 1 cut(s) 685
BfrI CTTAAG 2 cut(s) 200, 440
BfuI GTATCC 1 cut(s) 265
Bme18I GGWCC 2 cut(s) 62, 659
BmgT120I GGNCC 2 cut(s) 62, 659
BmiI GGNNCC 2 cut(s) 64, 545
BmsI GCATC 1 cut(s) 542
BoxI GACNNNNGTC 2 cut(s) 451, 503
BpiI GAAGAC 1 cut(s) 172
Bpu10I CCTNAGC 1 cut(s) 432
BsaJI CCNNGG 1 cut(s) 547
Bse1I ACTGG 4 cut(s) 96, 196, 337, 349
BseDI CCNNGG 1 cut(s) 547
BseGI GGATG 1 cut(s) 557
BseMII CTCAG 2 cut(s) 423, 669
BseNI ACTGG 4 cut(s) 96, 196, 337, 349
BseRI GAGGAG 1 cut(s) 277
BshNI GGYRCC 1 cut(s) 543
BslFI GGGAC 4 cut(s) 48, 182, 459, 593
BsmAI GTCTC 4 cut(s) 275, 377, 459, 491
BsmFI GGGAC 4 cut(s) 48, 182, 459, 593
Bsp143I GATC 4 cut(s) 289, 400, 469, 482
BspACI CCGC 2 cut(s) 133, 413
BspCNI CTCAG 2 cut(s) 424, 668
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 2 cut(s) 64, 545
BspPI GGATC 1 cut(s) 464
BspT107I GGYRCC 1 cut(s) 543
BspTI CTTAAG 2 cut(s) 200, 440
BsrI ACTGG 4 cut(s) 96, 196, 337, 349
BssECI CCNNGG 1 cut(s) 547
BssMI GATC 4 cut(s) 289, 400, 469, 482
BssT1I CCWWGG 1 cut(s) 547
Bst4CI ACNGT 2 cut(s) 343, 511
Bst6I CTCTTC 2 cut(s) 90, 471
BstAFI CTTAAG 2 cut(s) 200, 440
BstDEI CTNAG 3 cut(s) 56, 432, 655
BstF5I GGATG 1 cut(s) 557
BstKTI GATC 4 cut(s) 292, 403, 472, 485
BstMAI GTCTC 4 cut(s) 275, 377, 459, 491
BstMBI GATC 4 cut(s) 289, 400, 469, 482
BstMWI GCNNNNNNNGC 1 cut(s) 552
BstNSI RCATGY 1 cut(s) 454
BstPAI GACNNNNGTC 2 cut(s) 451, 503
BstSFI CTRYAG 1 cut(s) 685
BstV2I GAAGAC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 469
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 1 cut(s) 469
BsuI GTATCC 1 cut(s) 265
BtsCI GGATG 1 cut(s) 557
BtsIMutI CAGTG 1 cut(s) 89
CciI TCATGA 1 cut(s) 369
Cfr13I GGNCC 2 cut(s) 62, 659
CviAII CATG 4 cut(s) 298, 363, 370, 451
CviJI RGCY 4 cut(s) 311, 431, 529, 607
CviKI_1 RGCY 4 cut(s) 311, 431, 529, 607
DdeI CTNAG 3 cut(s) 56, 432, 655
DpnI GATC 4 cut(s) 291, 402, 471, 484
DpnII GATC 4 cut(s) 289, 400, 469, 482
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
Eam1104I CTCTTC 2 cut(s) 90, 471
EarI CTCTTC 2 cut(s) 90, 471
EciI GGCGGA 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 547
Eco47I GGWCC 2 cut(s) 62, 659
Eco57I CTGAAG 1 cut(s) 616
EcoO109I RGGNCCY 2 cut(s) 62, 659
EcoRI GAATTC 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 547
FaeI CATG 4 cut(s) 301, 366, 373, 454
FaiI YATR 9 cut(s) 189, 222, 299, 364, 371, 399, 452, 627, 687
FaqI GGGAC 4 cut(s) 48, 182, 459, 593
FatI CATG 4 cut(s) 297, 362, 369, 450
FokI GGATG 1 cut(s) 564
FspBI CTAG 2 cut(s) 678, 697
Hin1II CATG 4 cut(s) 301, 366, 373, 454
HinfI GANTC 3 cut(s) 409, 616, 674
HphI GGTGA 1 cut(s) 499
Hpy166II GTNNAC 2 cut(s) 19, 673
Hpy188I TCNGA 2 cut(s) 405, 635
Hpy188III TCNNGA 3 cut(s) 370, 467, 473
Hpy8I GTNNAC 2 cut(s) 19, 673
HpyAV CCTTC 2 cut(s) 158, 301
HpyCH4III ACNGT 2 cut(s) 343, 511
HpyCH4IV ACGT 2 cut(s) 394, 520
HpyCH4V TGCA 2 cut(s) 45, 555
HpyF10VI GCNNNNNNNGC 1 cut(s) 552
HpyF3I CTNAG 3 cut(s) 56, 432, 655
HpySE526I ACGT 2 cut(s) 394, 520
Hsp92II CATG 4 cut(s) 301, 366, 373, 454
Kzo9I GATC 4 cut(s) 289, 400, 469, 482
LpnPI CCDG 9 cut(s) 77, 177, 247, 288, 318, 362, 486, 541, 642
LweI GCATC 1 cut(s) 542
MaeI CTAG 2 cut(s) 678, 697
MaeII ACGT 2 cut(s) 394, 520
MaeIII GTNAC 2 cut(s) 211, 505
MalI GATC 4 cut(s) 291, 402, 471, 484
MboI GATC 4 cut(s) 289, 400, 469, 482
MboII GAAGA 7 cut(s) 107, 109, 172, 173, 332, 488, 622
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 1 cut(s) 469
MluCI AATT 5 cut(s) 137, 216, 315, 358, 573
MlyI GAGTC 1 cut(s) 668
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 4 cut(s) 53, 255, 427, 629
MseI TTAA 3 cut(s) 26, 201, 441
MspCI CTTAAG 2 cut(s) 200, 440
MunI CAATTG 1 cut(s) 573
MwoI GCNNNNNNNGC 1 cut(s) 552
NdeII GATC 4 cut(s) 289, 400, 469, 482
NlaIII CATG 4 cut(s) 301, 366, 373, 454
NlaIV GGNNCC 2 cut(s) 64, 545
NmuCI GTSAC 2 cut(s) 211, 505
NspI RCATGY 1 cut(s) 454
PagI TCATGA 1 cut(s) 369
PciI ACATGT 1 cut(s) 450
PfeI GAWTC 2 cut(s) 409, 616
PleI GAGTC 1 cut(s) 668
PpsI GAGTC 1 cut(s) 668
PpuMI RGGWCCY 2 cut(s) 62, 659
PscI ACATGT 1 cut(s) 450
PshAI GACNNNNGTC 2 cut(s) 451, 503
Psp1406I AACGTT 1 cut(s) 520
Psp5II RGGWCCY 2 cut(s) 62, 659
PspN4I GGNNCC 2 cut(s) 64, 545
PspPI GGNCC 2 cut(s) 62, 659
PspPPI RGGWCCY 2 cut(s) 62, 659
PsuI RGATCY 1 cut(s) 469
SaqAI TTAA 3 cut(s) 26, 201, 441
Sau3AI GATC 4 cut(s) 289, 400, 469, 482
Sau96I GGNCC 2 cut(s) 62, 659
SchI GAGTC 1 cut(s) 668
SetI ASST 9 cut(s) 43, 64, 397, 433, 523, 531, 541, 588, 661
SfaNI GCATC 1 cut(s) 542
SfcI CTRYAG 1 cut(s) 685
SinI GGWCC 2 cut(s) 62, 659
SmlI CTYRAG 2 cut(s) 200, 440
SmoI CTYRAG 2 cut(s) 200, 440
Sse9I AATT 5 cut(s) 137, 216, 315, 358, 573
SsiI CCGC 2 cut(s) 133, 413
SspMI CTAG 2 cut(s) 678, 697
StyI CCWWGG 1 cut(s) 547
TaaI ACNGT 2 cut(s) 343, 511
TaiI ACGT 2 cut(s) 397, 523
TaqI TCGA 2 cut(s) 466, 594
TasI AATT 5 cut(s) 137, 216, 315, 358, 573
TfiI GAWTC 2 cut(s) 409, 616
Tru1I TTAA 3 cut(s) 26, 201, 441
Tru9I TTAA 3 cut(s) 26, 201, 441
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 2 cut(s) 211, 505
Tsp45I GTSAC 2 cut(s) 211, 505
TspDTI ATGAA 5 cut(s) 240, 351, 358, 386, 614
TspGWI ACGGA 1 cut(s) 502
TspRI CASTG 1 cut(s) 96
Vha464I CTTAAG 2 cut(s) 200, 440
VpaK11BI GGWCC 2 cut(s) 62, 659
XapI RAATTY 2 cut(s) 137, 358
XceI RCATGY 1 cut(s) 454
XspI CTAG 2 cut(s) 678, 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.