MD11G1251200.v1.1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000210
Physical Location & Seq
Reverse (-)
36328742 .. 36329906
1165 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1251200.v1.1.491

Sequence Viewer

Length: 864 bp
ATGTATTTGCAGACTTGTAGTCGTCAGATTGGAGTTTCCATGTTAATACGTATACCACCTAAGTTCGTCAAGAACTTCAATGGACGGTCACTTTGCAAATGTGTTCTTCGAGGCCCCAATGGATTACGGAGGACTGTGGAATTGGAAGAGAGAAAGAAGGGCTTATTCTTCGATGATGGTTGGCAATATTTTGTGAAGGATCATCATTTAGAAAAAGGGGATTTTTTGGTTTTCAAATATGATGGCAAATCGAAGTTTAAAGTCGCAATCTATGATACAACTGCCTGTGAGAAGGATGTAGAGATAGCTGACAGCTGGAGGATTGGCGGTTCTATTCCTTTGTTTAACAACGGACAGGCTCGAGTAAAAGAAGAAATTAATGAACTTCAAACTGACAACTACAACGAAAATTGTGAAAACAAAGTGTTCAATTCTGGAAGAAGGAATTGCAATCATGTTATATCGGGGAAGAGACCTGCACACGATGACAGAGAAGCAACATCAAATGAATCCGTCGTGTTCAAATCAAAGAACTTGTGTTTTAAAGCAATCTTTAACAATCCAAGGCAATACCGTGCGACAATTCCGAAGAAACTAGCCATAGCTGAAGATCTTTTAAATAAGAAGAGTATAATGATTCATGACCCAACTGGGAGATCATGGCTCGTTAAACTTAATGTTCGCGGCAAGGTATCTCAGCGCCGTGTGGATATGACAACAGGTTTGGGAGAATGTTGTAGAGCCAACCGGATATTACCTGGGGACGAAGTCGTTTTTGAGTTTGTCAAGCAAAGTCTTTTGCAAATTCATATCCGCAGAGTGGGAGCATTAGGAGGCAAATCTGTGCTACCCGAAGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

288

Amino Acids

32.78

Weight (kDa)

9.47

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 15 - 92 8e-16 B3 DNA binding domain
B3 PF02362 191 - 273 2.4e-10 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 484
AccI GTMKAC 1 cut(s) 52
AccII CGCG 1 cut(s) 684
AciI CCGC 3 cut(s) 327, 684, 814
AclWI GGATC 1 cut(s) 207
AcsI RAATTY 1 cut(s) 804
AcuI CTGAAG 1 cut(s) 627
AfiI CCNNNNNNNGG 1 cut(s) 820
AgsI TTSAA 5 cut(s) 79, 235, 389, 430, 523
AhdI GACNNNNNGTC 1 cut(s) 18
AjnI CCWGG 1 cut(s) 757
AloI GAACNNNNNNTCC 2 cut(s) 313, 345
AluBI AGCT 4 cut(s) 308, 315, 605, 860
AluI AGCT 4 cut(s) 308, 315, 605, 860
Alw26I GTCTC 1 cut(s) 466
AlwI GGATC 1 cut(s) 207
Ama87I CYCGRG 1 cut(s) 360
AoxI GGCC 1 cut(s) 112
ApoI RAATTY 1 cut(s) 804
ArsI GACNNNNNNTTYG 4 cut(s) 75, 107, 706, 738
AseI ATTAAT 1 cut(s) 378
AspLEI GCGC 1 cut(s) 702
AspS9I GGNCC 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 360
BccI CCATC 2 cut(s) 170, 236
BceAI ACGGC 1 cut(s) 687
BciT130I CCWGG 1 cut(s) 759
BcoDI GTCTC 1 cut(s) 466
BfaI CTAG 1 cut(s) 596
BfoI RGCGCY 1 cut(s) 703
BfuAI ACCTGC 1 cut(s) 484
BglII AGATCT 1 cut(s) 610
BisI GCNGC 1 cut(s) 685
BlsI GCNGC 1 cut(s) 686
Bme1390I CCNGG 1 cut(s) 759
BmeRI GACNNNNNGTC 1 cut(s) 18
BmeT110I CYCGRG 1 cut(s) 360
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 759
BmrI ACTGGG 1 cut(s) 660
BmuI ACTGGG 1 cut(s) 660
BpmI CTGGAG 1 cut(s) 337
BsaAI YACGTR 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 2 cut(s) 563, 758
BsaWI WCCGGW 1 cut(s) 747
Bsc4I CCNNNNNNNGG 1 cut(s) 820
Bse1I ACTGG 1 cut(s) 655
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 2 cut(s) 563, 758
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 820
BseMII CTCAG 1 cut(s) 710
BseNI ACTGG 1 cut(s) 655
BsgI GTGCAG 1 cut(s) 462
Bsh1236I CGCG 1 cut(s) 684
BshFI GGCC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 1 cut(s) 748
BslFI GGGAC 1 cut(s) 776
BslI CCNNNNNNNGG 1 cut(s) 820
BsmAI GTCTC 1 cut(s) 466
BsmFI GGGAC 1 cut(s) 776
BsnI GGCC 1 cut(s) 114
Bso31I GGTCTC 1 cut(s) 466
BsoBI CYCGRG 1 cut(s) 360
Bsp143I GATC 3 cut(s) 199, 610, 656
BspACI CCGC 3 cut(s) 327, 684, 814
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 709
BspFNI CGCG 1 cut(s) 684
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 484
BspPI GGATC 1 cut(s) 207
BspTNI GGTCTC 1 cut(s) 466
BsrI ACTGG 1 cut(s) 655
BssECI CCNNGG 2 cut(s) 563, 758
BssMI GATC 3 cut(s) 199, 610, 656
BssNAI GTATAC 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 563
Bst1107I GTATAC 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 3 cut(s) 87, 136, 575
Bst6I CTCTTC 3 cut(s) 141, 464, 620
BstBAI YACGTR 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 60, 696
BstF5I GGATG 1 cut(s) 301
BstFNI CGCG 1 cut(s) 684
BstH2I RGCGCY 1 cut(s) 703
BstHHI GCGC 1 cut(s) 702
BstKTI GATC 3 cut(s) 202, 613, 659
BstMAI GTCTC 1 cut(s) 466
BstMBI GATC 3 cut(s) 199, 610, 656
BstNI CCWGG 1 cut(s) 759
BstSCI CCNGG 1 cut(s) 757
BstSNI TACGTA 1 cut(s) 50
BstUI CGCG 1 cut(s) 684
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
BstZ17I GTATAC 1 cut(s) 53
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 301
BveI ACCTGC 1 cut(s) 484
CciI TCATGA 1 cut(s) 640
CfoI GCGC 1 cut(s) 702
Cfr13I GGNCC 1 cut(s) 113
CviAII CATG 4 cut(s) 40, 455, 641, 660
DdeI CTNAG 2 cut(s) 60, 696
DpnI GATC 3 cut(s) 201, 612, 658
DpnII GATC 3 cut(s) 199, 610, 656
DraI TTTAAA 3 cut(s) 259, 544, 618
DriI GACNNNNNGTC 1 cut(s) 18
Eam1104I CTCTTC 3 cut(s) 141, 464, 620
Eam1105I GACNNNNNGTC 1 cut(s) 18
EarI CTCTTC 3 cut(s) 141, 464, 620
Eco105I TACGTA 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 563
Eco31I GGTCTC 1 cut(s) 466
Eco57I CTGAAG 1 cut(s) 627
Eco88I CYCGRG 1 cut(s) 360
EcoO109I RGGNCCY 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 757
EcoT14I CCWWGG 1 cut(s) 563
ErhI CCWWGG 1 cut(s) 563
FaeI CATG 4 cut(s) 43, 458, 644, 663
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 1 cut(s) 776
FatI CATG 4 cut(s) 39, 454, 640, 659
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 685
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 1 cut(s) 685
FspBI CTAG 1 cut(s) 596
GlaI GCGC 1 cut(s) 701
GluI GCNGC 1 cut(s) 685
GsuI CTGGAG 1 cut(s) 337
HaeII RGCGCY 1 cut(s) 703
HaeIII GGCC 1 cut(s) 114
HapII CCGG 1 cut(s) 748
HhaI GCGC 1 cut(s) 702
Hin1II CATG 4 cut(s) 43, 458, 644, 663
Hin6I GCGC 1 cut(s) 700
HinP1I GCGC 1 cut(s) 700
HindIII AAGCTT 1 cut(s) 858
HinfI GANTC 2 cut(s) 509, 637
HpaII CCGG 1 cut(s) 748
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 2 cut(s) 27, 588
Hpy188III TCNNGA 3 cut(s) 70, 435, 641
Hpy8I GTNNAC 1 cut(s) 53
Hpy99I CGWCG 1 cut(s) 518
HpyAV CCTTC 4 cut(s) 151, 190, 286, 435
HpyCH4III ACNGT 3 cut(s) 87, 136, 575
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 5 cut(s) 10, 96, 450, 479, 802
HpyF3I CTNAG 2 cut(s) 60, 696
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 4 cut(s) 43, 458, 644, 663
HspAI GCGC 1 cut(s) 700
Kzo9I GATC 3 cut(s) 199, 610, 656
LmnI GCTCC 1 cut(s) 824
MaeI CTAG 1 cut(s) 596
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 1 cut(s) 87
MalI GATC 3 cut(s) 201, 612, 658
MboI GATC 3 cut(s) 199, 610, 656
MboII GAAGA 9 cut(s) 98, 158, 160, 383, 450, 481, 601, 620, 637
MflI RGATCY 1 cut(s) 610
MluCI AATT 7 cut(s) 140, 375, 409, 430, 445, 582, 804
MnlI CCTC 4 cut(s) 104, 123, 312, 827
MspA1I CMGCKG 1 cut(s) 315
MspI CCGG 1 cut(s) 748
MspR9I CCNGG 1 cut(s) 759
MvaI CCWGG 1 cut(s) 759
MvnI CGCG 1 cut(s) 684
NdeII GATC 3 cut(s) 199, 610, 656
NlaIII CATG 4 cut(s) 43, 458, 644, 663
NlaIV GGNNCC 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 87
PaeR7I CTCGAG 1 cut(s) 360
PagI TCATGA 1 cut(s) 640
PfeI GAWTC 2 cut(s) 509, 637
PflFI GACNNNGTC 1 cut(s) 767
PkrI GCNGC 1 cut(s) 686
Ppu21I YACGTR 1 cut(s) 50
PshBI ATTAAT 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 757
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 113
PspXI VCTCGAGB 1 cut(s) 360
PsuI RGATCY 1 cut(s) 610
PsyI GACNNNGTC 1 cut(s) 767
PvuII CAGCTG 1 cut(s) 315
SatI GCNGC 1 cut(s) 685
Sau3AI GATC 3 cut(s) 199, 610, 656
Sau96I GGNCC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 759
Sfr274I CTCGAG 1 cut(s) 360
SlaI CTCGAG 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 360
SmoI CTYRAG 1 cut(s) 360
SnaBI TACGTA 1 cut(s) 50
Sse9I AATT 7 cut(s) 140, 375, 409, 430, 445, 582, 804
SsiI CCGC 3 cut(s) 327, 684, 814
SspI AATATT 1 cut(s) 188
SspMI CTAG 1 cut(s) 596
StyD4I CCNGG 1 cut(s) 757
StyI CCWWGG 1 cut(s) 563
TaaI ACNGT 3 cut(s) 87, 136, 575
TaiI ACGT 1 cut(s) 52
TaqI TCGA 4 cut(s) 109, 171, 251, 361
TasI AATT 7 cut(s) 140, 375, 409, 430, 445, 582, 804
TauI GCSGC 1 cut(s) 687
TfiI GAWTC 2 cut(s) 509, 637
TseFI GTSAC 1 cut(s) 87
Tsp45I GTSAC 1 cut(s) 87
TspDTI ATGAA 4 cut(s) 396, 522, 629, 797
TspGWI ACGGA 3 cut(s) 142, 366, 502
Tth111I GACNNNGTC 1 cut(s) 767
VspI ATTAAT 1 cut(s) 378
XapI RAATTY 1 cut(s) 804
XhoI CTCGAG 1 cut(s) 360
XmiI GTMKAC 1 cut(s) 52
XspI CTAG 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.