Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000210

Physical Location & Seq

Genomic Coordinates Forward (+)

50646542 .. 50647786

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00321350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAACACTCGCACTCCAACTCAACCCCAAAAGTCAACAACGCTAGGTTCTCCATCTCTCCTGTCGTCATTGCTACCCATCTTTGCTTTCTCACTCCGTATACCACGTGCGTTTGTGAAGAACATCAATGGTTGTGTACCAAGAATGTGTGGCCTTAGAGGCCCTTGTGGAAACCTGTGGGCTGTGAATTTAAAAGAGATCGAGGGTCGCGTGCTTCATTTTCTGGAAGTTGGGGATTTCTTGACTTTCACTAAAGATGGTGGATCAATTTTTGATGTCATAATTTATGGTAAAAGCTACTGCAAGAAGAATGTTGAAGCACCAAGAGCAGGATTGGCAATGTTGTGGACAGAACAATTAAGAATTCAGACCAGAGTAGTCATAGCTGCAGGTCTTATGAGCAATGAAACTATAATGCTTCAAGATCCAGCTGGGAGGCCATGGTCTATTAAACTCAAAGAAACGACAAGGGGTCGATTTGCGTATGGAAGGCTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

166

Amino Acids

18.44

Weight (kDa)

10.03

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66980
fragaria_vesca	FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica	MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica	Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis	pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis	RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata	RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora	Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii	Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa	Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha	Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana	Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	100
AccII	CGCG	1 cut(s)	210
AclWI	GGATC	2 cut(s)	271, 419
AcsI	RAATTY	2 cut(s)	187, 363
AcvI	CACGTG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	317, 422
AhdI	GACNNNNNGTC	1 cut(s)	471
AluBI	AGCT	3 cut(s)	297, 386, 431
AluI	AGCT	3 cut(s)	297, 386, 431
AlwI	GGATC	2 cut(s)	271, 419
AoxI	GGCC	3 cut(s)	151, 160, 437
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	2 cut(s)	187, 363
AspS9I	GGNCC	1 cut(s)	161
BbrPI	CACGTG	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	3 cut(s)	61, 86, 251
BfaI	CTAG	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	387
BfuAI	ACCTGC	1 cut(s)	380
BglI	GCCNNNNNGGC	1 cut(s)	159
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
BmeRI	GACNNNNNGTC	1 cut(s)	471
BmgT120I	GGNCC	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	440
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse3DI	GCAATG	3 cut(s)	68, 345, 409
BseDI	CCNNGG	1 cut(s)	440
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMI	GCAATG	3 cut(s)	68, 345, 409
BseXI	GCAGC	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	431
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	3 cut(s)	153, 162, 439
BslI	CCNNNNNNNGG	1 cut(s)	329
BsnI	GGCC	3 cut(s)	153, 162, 439
Bsp143I	GATC	3 cut(s)	198, 263, 424
Bsp19I	CCATGG	1 cut(s)	440
BspANI	GGCC	3 cut(s)	153, 162, 439
BspFNI	CGCG	1 cut(s)	210
BspMAI	CTGCAG	1 cut(s)	391
BspMI	ACCTGC	1 cut(s)	380
BspPI	GGATC	2 cut(s)	271, 419
BsrDI	GCAATG	3 cut(s)	68, 345, 409
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	3 cut(s)	198, 263, 424
BssNAI	GTATAC	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	440
Bst1107I	GTATAC	1 cut(s)	101
BstBAI	YACGTR	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	440
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	3 cut(s)	201, 266, 427
BstMBI	GATC	3 cut(s)	198, 263, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 326, 335
BstSFI	CTRYAG	1 cut(s)	387
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BstZ17I	GTATAC	1 cut(s)	101
BsuRI	GGCC	3 cut(s)	153, 162, 439
BtgI	CCRYGG	1 cut(s)	440
BveI	ACCTGC	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	1 cut(s)	441
CviJI	RGCY	8 cut(s)	153, 162, 182, 297, 386, 431, 439, 493
CviKI_1	RGCY	8 cut(s)	153, 162, 182, 297, 386, 431, 439, 493
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	3 cut(s)	200, 265, 426
DpnII	GATC	3 cut(s)	198, 263, 424
DraI	TTTAAA	1 cut(s)	192
DriI	GACNNNNNGTC	1 cut(s)	471
Eam1105I	GACNNNNNGTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	440
Eco72I	CACGTG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	440
FaeI	CATG	1 cut(s)	444
FaiI	YATR	8 cut(s)	101, 281, 288, 383, 398, 413, 442, 486
FatI	CATG	1 cut(s)	440
FblI	GTMKAC	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	1 cut(s)	387
GsaI	CCCAGC	1 cut(s)	435
HaeIII	GGCC	3 cut(s)	153, 162, 439
Hin1II	CATG	1 cut(s)	444
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
Hpy166II	GTNNAC	4 cut(s)	36, 101, 137, 348
Hpy188I	TCNGA	1 cut(s)	369
Hpy188III	TCNNGA	3 cut(s)	224, 241, 422
Hpy8I	GTNNAC	4 cut(s)	36, 101, 137, 348
HpyAV	CCTTC	1 cut(s)	483
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	303, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 326, 335
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	1 cut(s)	444
Kzo9I	GATC	3 cut(s)	198, 263, 424
LpnPI	CCDG	9 cut(s)	74, 188, 209, 315, 375, 385, 417, 441, 479
Lsp1109I	GCAGC	1 cut(s)	373
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	1 cut(s)	106
MalI	GATC	3 cut(s)	200, 265, 426
MboI	GATC	3 cut(s)	198, 263, 424
MboII	GAAGA	2 cut(s)	130, 319
MflI	RGATCY	1 cut(s)	424
MluCI	AATT	5 cut(s)	187, 267, 282, 356, 363
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	3 cut(s)	152, 196, 429
MseI	TTAA	3 cut(s)	191, 359, 450
MspA1I	CMGCKG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	159, 326, 335
NcoI	CCATGG	1 cut(s)	440
NdeII	GATC	3 cut(s)	198, 263, 424
NlaIII	CATG	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	388
PmaCI	CACGTG	1 cut(s)	107
PmlI	CACGTG	1 cut(s)	107
Ppu21I	YACGTR	1 cut(s)	107
PspCI	CACGTG	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	431
PspPI	GGNCC	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	424
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SaqAI	TTAA	3 cut(s)	191, 359, 450
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	3 cut(s)	198, 263, 424
Sau96I	GGNCC	1 cut(s)	161
SetI	ASST	7 cut(s)	49, 109, 177, 299, 388, 394, 433
SfcI	CTRYAG	1 cut(s)	387
SfiI	GGCCNNNNNGGCC	1 cut(s)	159
Sse9I	AATT	5 cut(s)	187, 267, 282, 356, 363
SspMI	CTAG	1 cut(s)	44
StyI	CCWWGG	1 cut(s)	440
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	2 cut(s)	201, 475
TasI	AATT	5 cut(s)	187, 267, 282, 356, 363
Tru1I	TTAA	3 cut(s)	191, 359, 450
Tru9I	TTAA	3 cut(s)	191, 359, 450
TseI	GCWGC	1 cut(s)	386
TspDTI	ATGAA	3 cut(s)	17, 206, 420
TspGWI	ACGGA	1 cut(s)	86
XapI	RAATTY	2 cut(s)	187, 363
XmiI	GTMKAC	1 cut(s)	100
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.