Rorug06G0291000

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000210
Physical Location & Seq
Reverse (-)
44191499 .. 44192848
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0291000.1

Sequence Viewer

Length: 672 bp
ATGGCTGGTGTTCTGGATACTACTTCCTGCACTTACCGGTGTCGTTATCATGCCTTCTTGAGTTTCAGGGGCGAAGATACACGCAAGGGCTTTAGTGATCATCTCTATAGAGCTTTGGAGTTGGCAGGAATTCACACTTTCAGAGATGATGATGAAATTGAGAGAGGGGCAAATATAGCTACAGAGCTACATAAAGCTATACATGAGTCACGAGTAGCCATAATAGTCTTCTCTAATGACTATGCTTCCTCAAGTTGGTGCTTGGACGAACTTACCAAGATCATGGAACGTAAAAGGACCGATGGATATATGGTAGTGCCAGTTTTCTATAAGGTGGATCCATCTGTTGTTAGGTGGCAGATTAGGAGTTTTGCAGATGCATTTGCCAAACATGAAAAGCGCTTCAAGGAGGAGATCGGCAAGGTGGACAAGTGGAGAAAAGCTCTTAAAGATGTAGCCGATCTAGGAGGGATGGTCTTAGGAGATCAGTACGAATCACAGCTCATCCAAAATACTGTTGATGAGATTGAAAAAAAAATGGATCCCATTACATTAAATGTTGCTCCATATGCTGTTGGAATAAATGCTCGTGTGGAAGACCTCAACATGTGGTTAAGAGATGGATCAGTTGATGTTGGTGTGGCTGGCATCTACGGGATGGGTGGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

223

Amino Acids

25.31

Weight (kDa)

5.72

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 16 - 183 1.9e-51 TIR domain
TIR_2 PF13676 19 - 129 4.9e-18 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 5 cut(s) 332, 345, 536, 549, 631
AcsI RAATTY 2 cut(s) 129, 666
AfaI GTAC 1 cut(s) 491
AfeI AGCGCT 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 255
AflIII ACRYGT 1 cut(s) 606
AgeI ACCGGT 1 cut(s) 36
AgsI TTSAA 2 cut(s) 406, 530
AluBI AGCT 6 cut(s) 113, 179, 187, 197, 443, 502
AluI AGCT 6 cut(s) 113, 179, 187, 197, 443, 502
AlwI GGATC 5 cut(s) 332, 345, 536, 549, 631
Aor51HI AGCGCT 1 cut(s) 401
ApoI RAATTY 2 cut(s) 129, 666
AsiGI ACCGGT 1 cut(s) 36
AspLEI GCGC 1 cut(s) 402
AspS9I GGNCC 1 cut(s) 297
AvaII GGWCC 1 cut(s) 297
BamHI GGATCC 2 cut(s) 337, 541
BauI CACGAG 2 cut(s) 210, 588
BbsI GAAGAC 2 cut(s) 220, 603
BccI CCATC 5 cut(s) 296, 349, 466, 614, 652
BciVI GTATCC 1 cut(s) 10
BclI TGATCA 1 cut(s) 97
BfaI CTAG 1 cut(s) 464
BfmI CTRYAG 2 cut(s) 106, 180
BfoI RGCGCY 1 cut(s) 403
BfuI GTATCC 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 339, 543
BmsI GCATC 2 cut(s) 367, 657
BpiI GAAGAC 2 cut(s) 220, 603
BplI GAGNNNNNCTC 2 cut(s) 427, 459
BpuEI CTTGAG 2 cut(s) 79, 235
BsaWI WCCGGW 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse118I RCCGGY 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 320
BseGI GGATG 3 cut(s) 477, 504, 663
BseLI CCNNNNNNNGG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 425
BsgI GTGCAG 1 cut(s) 13
BshTI ACCGGT 1 cut(s) 36
BsiSI CCGG 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 255
Bsp143I GATC 8 cut(s) 97, 279, 337, 414, 460, 484, 541, 623
BspLI GGNNCC 2 cut(s) 339, 543
BspPI GGATC 5 cut(s) 332, 345, 536, 549, 631
BsrFI RCCGGY 1 cut(s) 36
BsrI ACTGG 1 cut(s) 320
BssAI RCCGGY 1 cut(s) 36
BssMI GATC 8 cut(s) 97, 279, 337, 414, 460, 484, 541, 623
BssSI CACGAG 2 cut(s) 210, 588
Bst2BI CACGAG 2 cut(s) 210, 588
Bst4CI ACNGT 1 cut(s) 517
BstC8I GCNNGC 1 cut(s) 646
BstDEI CTNAG 1 cut(s) 478
BstF5I GGATG 3 cut(s) 477, 504, 663
BstH2I RGCGCY 1 cut(s) 403
BstHHI GCGC 1 cut(s) 402
BstKTI GATC 8 cut(s) 100, 282, 340, 417, 463, 487, 544, 626
BstMBI GATC 8 cut(s) 97, 279, 337, 414, 460, 484, 541, 623
BstMWI GCNNNNNNNGC 2 cut(s) 176, 569
BstNSI RCATGY 1 cut(s) 610
BstSFI CTRYAG 2 cut(s) 106, 180
BstV2I GAAGAC 2 cut(s) 220, 603
BstX2I RGATCY 2 cut(s) 337, 541
BstXI CCANNNNNNTGG 1 cut(s) 283
BstYI RGATCY 2 cut(s) 337, 541
BsuI GTATCC 1 cut(s) 10
BtsCI GGATG 3 cut(s) 477, 504, 663
Cac8I GCNNGC 1 cut(s) 646
CfoI GCGC 1 cut(s) 402
Cfr10I RCCGGY 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 490
CspAI ACCGGT 1 cut(s) 36
CviAII CATG 5 cut(s) 50, 203, 283, 392, 607
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 1 cut(s) 478
DpnI GATC 8 cut(s) 99, 281, 339, 416, 462, 486, 543, 625
DpnII GATC 8 cut(s) 97, 279, 337, 414, 460, 484, 541, 623
Eco47I GGWCC 1 cut(s) 297
Eco47III AGCGCT 1 cut(s) 401
EcoRI GAATTC 1 cut(s) 129
EcoT22I ATGCAT 1 cut(s) 382
FaeI CATG 5 cut(s) 53, 206, 286, 395, 610
FatI CATG 5 cut(s) 49, 202, 282, 391, 606
FauNDI CATATG 1 cut(s) 568
FbaI TGATCA 1 cut(s) 97
FokI GGATG 2 cut(s) 484, 491
FspBI CTAG 1 cut(s) 464
GlaI GCGC 1 cut(s) 401
HaeII RGCGCY 1 cut(s) 403
HapII CCGG 1 cut(s) 37
HhaI GCGC 1 cut(s) 402
Hin1II CATG 5 cut(s) 53, 206, 286, 395, 610
Hin6I GCGC 1 cut(s) 400
HinP1I GCGC 1 cut(s) 400
HinfI GANTC 2 cut(s) 206, 494
HpaII CCGG 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 3 cut(s) 14, 58, 210
Hpy8I GTNNAC 1 cut(s) 427
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 3 cut(s) 30, 374, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 569
HpyF3I CTNAG 1 cut(s) 478
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 5 cut(s) 53, 206, 286, 395, 610
HspAI GCGC 1 cut(s) 400
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 8 cut(s) 97, 279, 337, 414, 460, 484, 541, 623
LmnI GCTCC 1 cut(s) 568
LpnPI CCDG 6 cut(s) 40, 50, 52, 111, 333, 630
LweI GCATC 2 cut(s) 367, 657
MaeI CTAG 1 cut(s) 464
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 207
MalI GATC 8 cut(s) 99, 281, 339, 416, 462, 486, 543, 625
MboI GATC 8 cut(s) 97, 279, 337, 414, 460, 484, 541, 623
MboII GAAGA 3 cut(s) 86, 220, 608
MflI RGATCY 2 cut(s) 337, 541
MluCI AATT 3 cut(s) 129, 156, 666
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 556
MnlI CCTC 5 cut(s) 158, 259, 403, 461, 611
Mph1103I ATGCAT 1 cut(s) 382
MseI TTAA 3 cut(s) 447, 554, 614
MspI CCGG 1 cut(s) 37
MwoI GCNNNNNNNGC 2 cut(s) 176, 569
NdeI CATATG 1 cut(s) 568
NdeII GATC 8 cut(s) 97, 279, 337, 414, 460, 484, 541, 623
NlaIII CATG 5 cut(s) 53, 206, 286, 395, 610
NlaIV GGNNCC 2 cut(s) 339, 543
NmuCI GTSAC 1 cut(s) 207
NsiI ATGCAT 1 cut(s) 382
NspI RCATGY 1 cut(s) 610
PciI ACATGT 1 cut(s) 606
PfeI GAWTC 1 cut(s) 494
PinAI ACCGGT 1 cut(s) 36
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PscI ACATGT 1 cut(s) 606
PspN4I GGNNCC 2 cut(s) 339, 543
PspPI GGNCC 1 cut(s) 297
PsuI RGATCY 2 cut(s) 337, 541
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
SaqAI TTAA 3 cut(s) 447, 554, 614
Sau3AI GATC 8 cut(s) 97, 279, 337, 414, 460, 484, 541, 623
Sau96I GGNCC 1 cut(s) 297
SchI GAGTC 1 cut(s) 215
SfaNI GCATC 2 cut(s) 367, 657
SfcI CTRYAG 2 cut(s) 106, 180
SinI GGWCC 1 cut(s) 297
SmlI CTYRAG 2 cut(s) 58, 250
SmoI CTYRAG 2 cut(s) 58, 250
Sse9I AATT 3 cut(s) 129, 156, 666
SspMI CTAG 1 cut(s) 464
TaaI ACNGT 1 cut(s) 517
TaiI ACGT 1 cut(s) 292
TaqII GACCGA 1 cut(s) 314
TasI AATT 3 cut(s) 129, 156, 666
TfiI GAWTC 1 cut(s) 494
Tru1I TTAA 3 cut(s) 447, 554, 614
Tru9I TTAA 3 cut(s) 447, 554, 614
TseFI GTSAC 1 cut(s) 207
Tsp45I GTSAC 1 cut(s) 207
TspDTI ATGAA 2 cut(s) 168, 408
VpaK11BI GGWCC 1 cut(s) 297
XapI RAATTY 2 cut(s) 129, 666
XceI RCATGY 1 cut(s) 610
XspI CTAG 1 cut(s) 464
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.