Prupe.4G206300_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000210
Physical Location & Seq
Reverse (-)
12879160 .. 12881204
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G206300.2

Sequence Viewer

Length: 894 bp
ATGGCAAGGAAACTAGTTAAGCCTTCGCTAAATAAGCAATCTTTCTTCAAGATCCTACTTGGTGACTTCTCTCAGCGTCTGCGTATACCACCTAAGTTTGTCAAGAACTTCAATGTACGGCCACTTCACAAATGTGCTCTCAGTGGCCCTAGTGGAATTCGGTGGACTGTGGAATTGGAAGAGAGAGAGAATGGCTTGTTCTTCCAAGATGGTTGGCAAGGGTTTGTGAAGGATCATCATTTAGAAGATGGGGATTTTTTGGTTTTCAAATATGATGGTGAATCAAAGTTTAAAGTCACAATCTATGATAGAACTGCTTGTGAGAAGAATGTAAAGGTAGCTGAGAGGAGTGGCTGTCCTGTTTCCTTGGCTAACAAAGGGAAAGCTCAAGTTAAAGAAGAAATTGTTGACCGTGAAACTAGAAACTACAACAAAAACTGTCAAAACAAAGCAATTGTTTCTGGCAGAAGAAGTGGCAATTATGTTATACCTGGGAGGAGACCTGCAAATGATCATGTAGGAGCAACATCAACTGAACCCGTCTTGTTTAAACCGAAGTATTCGTGTTTCATGGTAACTTTCACGAGGAAACTTCGATATTGCGTTACAATTCCCAAAGAAGTAGCTGTAACTGAAGGTCTTGTTAGCAAGAAGAGTATGATGATTCAGGATTCAACTGGGAGATCATGGCCTGTTAAACTTAGAGTCCGGGGCAAATTATCTTCTTGTCGTGTGTACATGTCTACAGGTTTGTTAAACTTTTGTAACGCGAACCAGATTATACCTGGGGACACCGCCATTTTTGAATTTGTCAAGCCAAGTCTGGCACAAATTCATATTTTCAGAGTGGGTGGCAATTCTGTAGTACTAGCTGAACCTGATGTAAAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

298

Amino Acids

33.57

Weight (kDa)

9.73

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 511
AccI GTMKAC 2 cut(s) 85, 743
AccII CGCG 1 cut(s) 770
AciI CCGC 1 cut(s) 795
AclWI GGATC 2 cut(s) 46, 240
AcoI YGGCCR 1 cut(s) 119
AcsI RAATTY 3 cut(s) 156, 806, 831
AcuI CTGAAG 1 cut(s) 654
AfaI GTAC 3 cut(s) 117, 737, 867
AflIII ACRYGT 1 cut(s) 738
AgsI TTSAA 5 cut(s) 49, 112, 268, 675, 806
AhlI ACTAGT 1 cut(s) 13
AjnI CCWGG 2 cut(s) 490, 784
AleI CACNNNNGTG 1 cut(s) 132
AluBI AGCT 4 cut(s) 341, 386, 626, 872
AluI AGCT 4 cut(s) 341, 386, 626, 872
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 493
AlwI GGATC 2 cut(s) 46, 240
AlwNI CAGNNNCTG 1 cut(s) 79
AoxI GGCC 3 cut(s) 119, 145, 689
ApoI RAATTY 3 cut(s) 156, 806, 831
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 710
AsuHPI GGTGA 2 cut(s) 74, 290
BarI GAAGNNNNNNTAC 2 cut(s) 108, 140
BauI CACGAG 1 cut(s) 583
Bbv12I GWGCWC 1 cut(s) 139
BccI CCATC 3 cut(s) 203, 242, 269
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 2 cut(s) 492, 786
BclI TGATCA 1 cut(s) 511
BcnI CCSGG 1 cut(s) 710
BcoDI GTCTC 1 cut(s) 493
BcuI ACTAGT 1 cut(s) 13
BfaI CTAG 4 cut(s) 14, 150, 420, 869
BfmI CTRYAG 2 cut(s) 744, 861
BfuAI ACCTGC 1 cut(s) 511
BmcAI AGTACT 1 cut(s) 867
Bme1390I CCNGG 3 cut(s) 492, 710, 786
BmgT120I GGNCC 1 cut(s) 146
BmrFI CCNGG 3 cut(s) 492, 710, 786
BmrI ACTGGG 1 cut(s) 687
BmuI ACTGGG 1 cut(s) 687
BpuEI CTTGAG 1 cut(s) 372
BpuMI CCSGG 1 cut(s) 710
BsaI GGTCTC 1 cut(s) 493
BsaJI CCNNGG 4 cut(s) 366, 491, 709, 785
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bse1I ACTGG 1 cut(s) 682
BseBI CCWGG 2 cut(s) 492, 786
BseDI CCNNGG 4 cut(s) 366, 491, 709, 785
BseMII CTCAG 3 cut(s) 86, 154, 333
BseNI ACTGG 1 cut(s) 682
BseRI GAGGAG 2 cut(s) 361, 511
Bsh1236I CGCG 1 cut(s) 770
BshFI GGCC 3 cut(s) 121, 147, 691
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 709
BslFI GGGAC 1 cut(s) 803
BsmAI GTCTC 1 cut(s) 493
BsmFI GGGAC 1 cut(s) 803
BsnI GGCC 3 cut(s) 121, 147, 691
Bso31I GGTCTC 1 cut(s) 493
Bsp1286I GDGCHC 1 cut(s) 139
Bsp1407I TGTACA 1 cut(s) 735
Bsp143I GATC 4 cut(s) 51, 232, 511, 683
BspACI CCGC 1 cut(s) 795
BspANI GGCC 3 cut(s) 121, 147, 691
BspCNI CTCAG 3 cut(s) 85, 153, 334
BspFNI CGCG 1 cut(s) 770
BspMI ACCTGC 1 cut(s) 511
BspPI GGATC 2 cut(s) 46, 240
BspTNI GGTCTC 1 cut(s) 493
BsrGI TGTACA 1 cut(s) 735
BsrI ACTGG 1 cut(s) 682
BssECI CCNNGG 4 cut(s) 366, 491, 709, 785
BssMI GATC 4 cut(s) 51, 232, 511, 683
BssNAI GTATAC 1 cut(s) 86
BssSI CACGAG 1 cut(s) 583
BssT1I CCWWGG 1 cut(s) 366
Bst1107I GTATAC 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 583
Bst2UI CCWGG 2 cut(s) 492, 786
Bst4CI ACNGT 3 cut(s) 169, 413, 440
Bst6I CTCTTC 2 cut(s) 174, 647
BstAUI TGTACA 1 cut(s) 735
BstDEI CTNAG 5 cut(s) 72, 93, 140, 342, 701
BstFNI CGCG 1 cut(s) 770
BstKTI GATC 4 cut(s) 54, 235, 514, 686
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 4 cut(s) 51, 232, 511, 683
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 2 cut(s) 492, 786
BstNSI RCATGY 1 cut(s) 742
BstSCI CCNGG 3 cut(s) 490, 708, 784
BstSFI CTRYAG 2 cut(s) 744, 861
BstUI CGCG 1 cut(s) 770
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BstZ17I GTATAC 1 cut(s) 86
BsuRI GGCC 3 cut(s) 121, 147, 691
BtsIMutI CAGTG 1 cut(s) 148
BveI ACCTGC 1 cut(s) 511
CaiI CAGNNNCTG 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 146
CseI GACGC 1 cut(s) 65
Csp6I GTAC 3 cut(s) 116, 736, 866
CviAII CATG 4 cut(s) 515, 571, 687, 739
CviQI GTAC 3 cut(s) 116, 736, 866
DdeI CTNAG 5 cut(s) 72, 93, 140, 342, 701
DpnI GATC 4 cut(s) 53, 234, 513, 685
DpnII GATC 4 cut(s) 51, 232, 511, 683
DraI TTTAAA 2 cut(s) 292, 550
EaeI YGGCCR 1 cut(s) 119
Eam1104I CTCTTC 2 cut(s) 174, 647
EarI CTCTTC 2 cut(s) 174, 647
Eco130I CCWWGG 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 654
EcoRI GAATTC 1 cut(s) 156
EcoRII CCWGG 2 cut(s) 490, 784
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 4 cut(s) 518, 574, 690, 742
FaqI GGGAC 1 cut(s) 803
FatI CATG 4 cut(s) 514, 570, 686, 738
FbaI TGATCA 1 cut(s) 511
FblI GTMKAC 2 cut(s) 85, 743
FspBI CTAG 4 cut(s) 14, 150, 420, 869
HaeIII GGCC 3 cut(s) 121, 147, 691
HapII CCGG 1 cut(s) 709
HgaI GACGC 1 cut(s) 65
Hin1II CATG 4 cut(s) 518, 574, 690, 742
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 4 cut(s) 281, 664, 671, 705
HpaII CCGG 1 cut(s) 709
HphI GGTGA 2 cut(s) 74, 290
Hpy166II GTNNAC 5 cut(s) 86, 165, 409, 736, 744
Hpy188I TCNGA 1 cut(s) 845
Hpy188III TCNNGA 4 cut(s) 49, 103, 583, 668
Hpy8I GTNNAC 5 cut(s) 86, 165, 409, 736, 744
HpyAV CCTTC 3 cut(s) 33, 223, 629
HpyCH4III ACNGT 3 cut(s) 169, 413, 440
HpyCH4V TGCA 1 cut(s) 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 5 cut(s) 72, 93, 140, 342, 701
Hsp92II CATG 4 cut(s) 518, 574, 690, 742
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 4 cut(s) 51, 232, 511, 683
LmnI GCTCC 1 cut(s) 521
MaeI CTAG 4 cut(s) 14, 150, 420, 869
MaeIII GTNAC 6 cut(s) 62, 295, 574, 604, 628, 764
MalI GATC 4 cut(s) 53, 234, 513, 685
MboI GATC 4 cut(s) 51, 232, 511, 683
MboII GAAGA 9 cut(s) 37, 191, 193, 257, 337, 410, 480, 664, 714
MfeI CAATTG 1 cut(s) 453
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 139
MlyI GAGTC 1 cut(s) 714
MnlI CCTC 3 cut(s) 339, 489, 579
MseI TTAA 6 cut(s) 18, 291, 393, 549, 696, 755
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 1 cut(s) 709
MspR9I CCNGG 3 cut(s) 492, 710, 786
MssI GTTTAAAC 1 cut(s) 550
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 2 cut(s) 492, 786
MvnI CGCG 1 cut(s) 770
MwoI GCNNNNNNNGC 1 cut(s) 34
NciI CCSGG 1 cut(s) 710
NdeII GATC 4 cut(s) 51, 232, 511, 683
NlaIII CATG 4 cut(s) 518, 574, 690, 742
NmuCI GTSAC 2 cut(s) 62, 295
NspI RCATGY 1 cut(s) 742
OliI CACNNNNGTG 1 cut(s) 132
PciI ACATGT 1 cut(s) 738
PfeI GAWTC 3 cut(s) 281, 664, 671
PleI GAGTC 1 cut(s) 713
PmeI GTTTAAAC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 713
PscI ACATGT 1 cut(s) 738
Psp6I CCWGG 2 cut(s) 490, 784
PspGI CCWGG 2 cut(s) 490, 784
PspPI GGNCC 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 79
PsuI RGATCY 1 cut(s) 51
RsaI GTAC 3 cut(s) 117, 737, 867
RsaNI GTAC 3 cut(s) 116, 736, 866
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 6 cut(s) 18, 291, 393, 549, 696, 755
Sau3AI GATC 4 cut(s) 51, 232, 511, 683
Sau96I GGNCC 1 cut(s) 146
ScaI AGTACT 1 cut(s) 867
SchI GAGTC 1 cut(s) 714
ScrFI CCNGG 3 cut(s) 492, 710, 786
SduI GDGCHC 1 cut(s) 139
SfcI CTRYAG 2 cut(s) 744, 861
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 387
SmoI CTYRAG 1 cut(s) 387
SpeI ACTAGT 1 cut(s) 13
SsiI CCGC 1 cut(s) 795
SspMI CTAG 4 cut(s) 14, 150, 420, 869
StyD4I CCNGG 3 cut(s) 490, 708, 784
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 3 cut(s) 169, 413, 440
TaqI TCGA 1 cut(s) 595
TatI WGTACW 2 cut(s) 735, 865
TfiI GAWTC 3 cut(s) 281, 664, 671
Tru1I TTAA 6 cut(s) 18, 291, 393, 549, 696, 755
Tru9I TTAA 6 cut(s) 18, 291, 393, 549, 696, 755
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 2 cut(s) 62, 295
Tsp45I GTSAC 2 cut(s) 62, 295
TspDTI ATGAA 2 cut(s) 559, 824
TspRI CASTG 1 cut(s) 148
XapI RAATTY 3 cut(s) 156, 806, 831
XceI RCATGY 1 cut(s) 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 782
XmiI GTMKAC 2 cut(s) 85, 743
XspI CTAG 4 cut(s) 14, 150, 420, 869
ZrmI AGTACT 1 cut(s) 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.