FvH4_7g01780

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000210
Physical Location & Seq
Reverse (-)
2166744 .. 2169228
2485 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01780.t1

Sequence Viewer

Length: 726 bp
ATGGCTAGTTCAGTACCAGCACCAGCCTTTTTCACGGTCCTTGTTGGTGGTTTTTCTGAGAAAATGAAAATACCAAGAGCTTTTGTCAACCACTTCAATGGACCAGCACTCTGCCAACTTGAAGGCCCTAATGGAAATTGCTGGGATGTAAAATTGGAAGAGAAAAATAATGATTTTTTCTTCCACAAAGGCTGGAAGAAATTTGTGAAGGATAATTTTTTGGATGAAGGAGACTTTCTGGTTTTCAATTATGATGGCAATTCGTGTTTCAAAGTGACAATCTATGATGAAAGTGCATGTGAAATGGACATAGAAGCTGCCAAGACAAAGAGAAGTGGCGGTGCTCAAAGGAGGGATGACGTTCCGCCTGGGGAGTCAAGAATCATTGAGTTCAAATCAAAGCATTTTTGCTTCAAGAGAACTATGGAGAGGCACAGATTGTATCAACTGGTCATTCCTATAACAATAGCTAGGGCTAAGCTTGACATGGGCAGGCAGATTTTAGAGCTTCGGGATCCAAAAAACAGACCATGGCCTGTTACAGTGGCTCCCATGGAAGATGGCCGTCTGCTTGTGAACAAAGGCTGGCGTGATTGTTGCAAGGCGAACCAGGTTAAGGTCGGGCACACCATCGTTTTGGAGTTTGTCAAGAAACATGGGAAGCTTCACATCTTCAGAGATGAGGGGTGTGATGTGATACTCTCCGGTCCTCATGTTGTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

242

Amino Acids

27.53

Weight (kDa)

8.72

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 18 - 96 2.1e-19 B3 DNA binding domain
B3 PF02362 143 - 226 1.5e-11 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 339, 365
AclWI GGATC 2 cut(s) 509, 522
AcoI YGGCCR 1 cut(s) 562
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 658
AfaI GTAC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 616
AgsI TTSAA 6 cut(s) 97, 122, 247, 271, 394, 415
AjnI CCWGG 2 cut(s) 367, 609
AluBI AGCT 6 cut(s) 80, 317, 470, 481, 508, 664
AluI AGCT 6 cut(s) 80, 317, 470, 481, 508, 664
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 2 cut(s) 509, 522
AoxI GGCC 3 cut(s) 124, 533, 562
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 200
AspS9I GGNCC 4 cut(s) 37, 101, 125, 707
AvaII GGWCC 3 cut(s) 37, 101, 707
BaeGI GKGCMC 1 cut(s) 627
BamHI GGATCC 1 cut(s) 514
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 1 cut(s) 304
BccI CCATC 3 cut(s) 248, 554, 638
BceAI ACGGC 1 cut(s) 549
BciT130I CCWGG 2 cut(s) 369, 611
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 2 cut(s) 6, 471
BisI GCNGC 1 cut(s) 318
BlpI GCTNAGC 1 cut(s) 477
BlsI GCNGC 1 cut(s) 319
Bme1390I CCNGG 2 cut(s) 369, 611
Bme18I GGWCC 3 cut(s) 37, 101, 707
BmgT120I GGNCC 4 cut(s) 37, 101, 125, 707
BmiI GGNNCC 2 cut(s) 516, 549
BmrFI CCNGG 2 cut(s) 369, 611
Bpu1102I GCTNAGC 1 cut(s) 477
BsaJI CCNNGG 3 cut(s) 368, 530, 552
BsaWI WCCGGW 1 cut(s) 704
BsaXI ACNNNNNCTCC 2 cut(s) 532, 562
Bsc4I CCNNNNNNNGG 1 cut(s) 616
Bse1I ACTGG 1 cut(s) 453
BseBI CCWGG 2 cut(s) 369, 611
BseDI CCNNGG 3 cut(s) 368, 530, 552
BseGI GGATG 3 cut(s) 151, 229, 361
BseLI CCNNNNNNNGG 1 cut(s) 616
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 453
BseSI GKGCMC 1 cut(s) 627
BseXI GCAGC 1 cut(s) 304
BseYI CCCAGC 1 cut(s) 141
BshFI GGCC 3 cut(s) 126, 535, 564
BsiHKAI GWGCWC 1 cut(s) 346
BsiSI CCGG 1 cut(s) 705
BslI CCNNNNNNNGG 1 cut(s) 616
BsmAI GTCTC 1 cut(s) 225
BsnI GGCC 3 cut(s) 126, 535, 564
Bsp1286I GDGCHC 2 cut(s) 346, 627
Bsp143I GATC 1 cut(s) 514
Bsp1720I GCTNAGC 1 cut(s) 477
Bsp19I CCATGG 2 cut(s) 530, 552
BspACI CCGC 2 cut(s) 339, 365
BspANI GGCC 3 cut(s) 126, 535, 564
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 2 cut(s) 516, 549
BspPI GGATC 2 cut(s) 509, 522
BsrI ACTGG 1 cut(s) 453
BssECI CCNNGG 3 cut(s) 368, 530, 552
BssMI GATC 1 cut(s) 514
BssT1I CCWWGG 2 cut(s) 530, 552
Bst2UI CCWGG 2 cut(s) 369, 611
Bst4CI ACNGT 2 cut(s) 37, 544
Bst6I CTCTTC 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 494, 587
BstDEI CTNAG 2 cut(s) 57, 477
BstDSI CCRYGG 2 cut(s) 530, 552
BstF5I GGATG 3 cut(s) 151, 229, 361
BstKTI GATC 1 cut(s) 517
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 1 cut(s) 514
BstNI CCWGG 2 cut(s) 369, 611
BstNSI RCATGY 1 cut(s) 300
BstSCI CCNGG 2 cut(s) 367, 609
BstSLI GKGCMC 1 cut(s) 627
BstV1I GCAGC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 514
BstXI CCANNNNNNTGG 2 cut(s) 98, 637
BstYI RGATCY 1 cut(s) 514
BsuRI GGCC 3 cut(s) 126, 535, 564
BtgI CCRYGG 2 cut(s) 530, 552
BtsCI GGATG 3 cut(s) 151, 229, 361
BtsIMutI CAGTG 1 cut(s) 549
Cac8I GCNNGC 2 cut(s) 494, 587
Cfr13I GGNCC 4 cut(s) 37, 101, 125, 707
CsiI ACCWGGT 1 cut(s) 609
Csp6I GTAC 1 cut(s) 14
CviAII CATG 6 cut(s) 297, 487, 531, 553, 656, 713
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 2 cut(s) 57, 477
DpnI GATC 1 cut(s) 516
DpnII GATC 1 cut(s) 514
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 354
Eco130I CCWWGG 2 cut(s) 530, 552
Eco47I GGWCC 3 cut(s) 37, 101, 707
Eco57I CTGAAG 1 cut(s) 658
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 367, 609
EcoT14I CCWWGG 2 cut(s) 530, 552
ErhI CCWWGG 2 cut(s) 530, 552
FaeI CATG 6 cut(s) 300, 490, 534, 556, 659, 716
FatI CATG 6 cut(s) 296, 486, 530, 552, 655, 712
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 3 cut(s) 158, 236, 368
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 2 cut(s) 6, 471
GluI GCNGC 1 cut(s) 318
GsaI CCCAGC 1 cut(s) 145
HaeIII GGCC 3 cut(s) 126, 535, 564
HapII CCGG 1 cut(s) 705
Hin1II CATG 6 cut(s) 300, 490, 534, 556, 659, 716
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 2 cut(s) 479, 662
HinfI GANTC 2 cut(s) 374, 381
HpaII CCGG 1 cut(s) 705
Hpy166II GTNNAC 2 cut(s) 88, 577
Hpy188I TCNGA 2 cut(s) 58, 677
Hpy188III TCNNGA 4 cut(s) 378, 415, 512, 649
Hpy8I GTNNAC 2 cut(s) 88, 577
HpyAV CCTTC 3 cut(s) 116, 202, 221
HpyCH4III ACNGT 2 cut(s) 37, 544
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 2 cut(s) 296, 600
HpyF3I CTNAG 2 cut(s) 57, 477
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 6 cut(s) 300, 490, 534, 556, 659, 716
Kzo9I GATC 1 cut(s) 514
LmnI GCTCC 1 cut(s) 553
Lsp1109I GCAGC 1 cut(s) 304
MabI ACCWGGT 1 cut(s) 609
MaeI CTAG 2 cut(s) 6, 471
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 2 cut(s) 274, 538
MalI GATC 1 cut(s) 516
MboI GATC 1 cut(s) 514
MboII GAAGA 5 cut(s) 170, 172, 208, 569, 664
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 2 cut(s) 346, 627
MluCI AATT 6 cut(s) 136, 152, 200, 214, 247, 259
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 4 cut(s) 345, 423, 676, 720
MseI TTAA 1 cut(s) 615
MslI CAYNNNNRTG 1 cut(s) 96
MspI CCGG 1 cut(s) 705
MspR9I CCNGG 2 cut(s) 369, 611
MvaI CCWGG 2 cut(s) 369, 611
NcoI CCATGG 2 cut(s) 530, 552
NdeII GATC 1 cut(s) 514
NlaIII CATG 6 cut(s) 300, 490, 534, 556, 659, 716
NlaIV GGNNCC 2 cut(s) 516, 549
NmuCI GTSAC 1 cut(s) 274
NspI RCATGY 1 cut(s) 300
PfeI GAWTC 1 cut(s) 381
PkrI GCNGC 1 cut(s) 319
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp6I CCWGG 2 cut(s) 367, 609
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 2 cut(s) 367, 609
PspN4I GGNNCC 2 cut(s) 516, 549
PspPI GGNCC 4 cut(s) 37, 101, 125, 707
PsuI RGATCY 1 cut(s) 514
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 1 cut(s) 615
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 1 cut(s) 514
Sau96I GGNCC 4 cut(s) 37, 101, 125, 707
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 2 cut(s) 369, 611
SduI GDGCHC 2 cut(s) 346, 627
SetI ASST 9 cut(s) 82, 319, 363, 472, 483, 510, 615, 621, 666
SexAI ACCWGGT 1 cut(s) 609
SinI GGWCC 3 cut(s) 37, 101, 707
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 6 cut(s) 136, 152, 200, 214, 247, 259
SsiI CCGC 2 cut(s) 339, 365
SspMI CTAG 2 cut(s) 6, 471
StyD4I CCNGG 2 cut(s) 367, 609
StyI CCWWGG 2 cut(s) 530, 552
TaaI ACNGT 2 cut(s) 37, 544
TaiI ACGT 1 cut(s) 363
TasI AATT 6 cut(s) 136, 152, 200, 214, 247, 259
TfiI GAWTC 1 cut(s) 381
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 1 cut(s) 549
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 3 cut(s) 80, 240, 303
TspRI CASTG 1 cut(s) 549
VpaK11BI GGWCC 3 cut(s) 37, 101, 707
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 300
XspI CTAG 2 cut(s) 6, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.