Rorug06G0260100

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000210
Physical Location & Seq
Reverse (-)
40724759 .. 40725299
541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0260100.1

Sequence Viewer

Length: 516 bp
ATGGAGAAGGAGAAGAATAAAGTGGTCATAGATCATTATAGGGTTCTTGGTTTACCGTCGGGTAAGGAAGTCACCAAGCTTACCGAGAAAGAGATTACAAAGGCGTACAGAGCAAAGGCTTTGCAGTTGCATCCAGACAAAAGGCCAAACGATCTCGATGCCAATGCCAAGTTTCAAAGGCTCAACTCATCCTATGCGATACTCAGCAATCCAAAAGCCCGGAAACAGTTCGACTCTTCTCTGAGACCCGAGAACAAGTCCTCGGAACCACTACCAACCTCTGAACCACCACCAAGTAAGAATGAGGATCTTGACCAGGGTTACTTGTTTGTGCCCCCATCGTTTTTTCCGGAATCGAGATCCAGAAGCAGTACGTCGAATAGATTAGGTTCTTATATAGAAGGGTTCTTTAGATTACCCAATCGTGAACGATTGGATCTCTGGTCGGGGATGGTTCGACTAGGTCAATATTTTAAACGCAGACCACCTCCTCCTCAGGCTACCACCAATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

171

Amino Acids

19.63

Weight (kDa)

9.87

Isoelectric Point (pI)

69.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 11 - 78 2.9e-18 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 349
AclWI GGATC 3 cut(s) 315, 354, 444
AfaI GTAC 2 cut(s) 107, 373
AgsI TTSAA 1 cut(s) 176
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 238
AlwI GGATC 3 cut(s) 315, 354, 444
Ama87I CYCGRG 1 cut(s) 248
Aor13HI TCCGGA 1 cut(s) 349
AoxI GGCC 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 227
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 248
AxyI CCTNAGG 1 cut(s) 495
BaeGI GKGCMC 1 cut(s) 336
BccI CCATC 2 cut(s) 346, 445
BcgI CGANNNNNNTGC 4 cut(s) 140, 146, 174, 180
BciT130I CCWGG 1 cut(s) 317
BcnI CCSGG 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 238
BfaI CTAG 1 cut(s) 461
Bme1390I CCNGG 2 cut(s) 220, 317
BmeT110I CYCGRG 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 2 cut(s) 220, 317
BmsI GCATC 2 cut(s) 139, 148
BpuMI CCSGG 1 cut(s) 220
BsaI GGTCTC 1 cut(s) 238
BsaJI CCNNGG 2 cut(s) 261, 316
BsaWI WCCGGW 1 cut(s) 349
Bse21I CCTNAGG 1 cut(s) 495
BseAI TCCGGA 1 cut(s) 349
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 261, 316
BseGI GGATG 3 cut(s) 130, 188, 456
BseMII CTCAG 3 cut(s) 217, 233, 509
BseRI GAGGAG 2 cut(s) 480, 483
BseSI GKGCMC 1 cut(s) 336
BshFI GGCC 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 2 cut(s) 220, 350
BsmAI GTCTC 1 cut(s) 238
BsnI GGCC 1 cut(s) 145
Bso31I GGTCTC 1 cut(s) 238
BsoBI CYCGRG 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 336
Bsp13I TCCGGA 1 cut(s) 349
Bsp143I GATC 5 cut(s) 31, 151, 307, 359, 436
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 3 cut(s) 216, 234, 508
BspEI TCCGGA 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 3 cut(s) 315, 354, 444
BspTNI GGTCTC 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 261, 316
BssMI GATC 5 cut(s) 31, 151, 307, 359, 436
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 2 cut(s) 57, 228
Bst6I CTCTTC 1 cut(s) 241
BstDEI CTNAG 3 cut(s) 203, 242, 495
BstF5I GGATG 3 cut(s) 130, 188, 456
BstKTI GATC 5 cut(s) 34, 154, 310, 362, 439
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 5 cut(s) 31, 151, 307, 359, 436
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 317
BstSCI CCNGG 2 cut(s) 218, 315
BstSLI GKGCMC 1 cut(s) 336
BstX2I RGATCY 3 cut(s) 307, 359, 436
BstYI RGATCY 3 cut(s) 307, 359, 436
Bsu36I CCTNAGG 1 cut(s) 495
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 3 cut(s) 130, 188, 456
Csp6I GTAC 2 cut(s) 106, 372
CviJI RGCY 6 cut(s) 79, 119, 145, 181, 218, 500
CviKI_1 RGCY 6 cut(s) 79, 119, 145, 181, 218, 500
CviQI GTAC 2 cut(s) 106, 372
DdeI CTNAG 3 cut(s) 203, 242, 495
DpnI GATC 5 cut(s) 33, 153, 309, 361, 438
DpnII GATC 5 cut(s) 31, 151, 307, 359, 436
DraI TTTAAA 1 cut(s) 475
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Eco31I GGTCTC 1 cut(s) 238
Eco81I CCTNAGG 1 cut(s) 495
Eco88I CYCGRG 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 315
FaiI YATR 5 cut(s) 29, 39, 195, 396, 398
FokI GGATG 3 cut(s) 117, 175, 463
FspBI CTAG 1 cut(s) 461
HaeIII GGCC 1 cut(s) 145
HapII CCGG 2 cut(s) 220, 350
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 2 cut(s) 233, 353
HpaII CCGG 2 cut(s) 220, 350
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 2 cut(s) 53, 428
Hpy188I TCNGA 3 cut(s) 243, 265, 283
Hpy188III TCNNGA 7 cut(s) 134, 155, 311, 350, 357, 363, 425
Hpy8I GTNNAC 2 cut(s) 53, 428
Hpy99I CGWCG 2 cut(s) 61, 379
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 2 cut(s) 57, 228
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 2 cut(s) 124, 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 3 cut(s) 203, 242, 495
HpySE526I ACGT 1 cut(s) 374
Kpn2I TCCGGA 1 cut(s) 349
Kzo9I GATC 5 cut(s) 31, 151, 307, 359, 436
LpnPI CCDG 8 cut(s) 147, 233, 302, 329, 363, 376, 427, 482
LweI GCATC 2 cut(s) 139, 148
MaeI CTAG 1 cut(s) 461
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 2 cut(s) 70, 320
MalI GATC 5 cut(s) 33, 153, 309, 361, 438
MboI GATC 5 cut(s) 31, 151, 307, 359, 436
MboII GAAGA 2 cut(s) 25, 228
MflI RGATCY 3 cut(s) 307, 359, 436
MhlI GDGCHC 1 cut(s) 336
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 6 cut(s) 271, 289, 298, 498, 501, 504
MroI TCCGGA 1 cut(s) 349
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 1 cut(s) 474
MspI CCGG 2 cut(s) 220, 350
MspR9I CCNGG 2 cut(s) 220, 317
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 220
NdeII GATC 5 cut(s) 31, 151, 307, 359, 436
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 353
PflFI GACNNNGTC 1 cut(s) 462
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 267
PsuI RGATCY 3 cut(s) 307, 359, 436
PsyI GACNNNGTC 1 cut(s) 462
RsaI GTAC 2 cut(s) 107, 373
RsaNI GTAC 2 cut(s) 106, 372
SaqAI TTAA 1 cut(s) 474
Sau3AI GATC 5 cut(s) 31, 151, 307, 359, 436
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 2 cut(s) 220, 317
SduI GDGCHC 1 cut(s) 336
SetI ASST 6 cut(s) 81, 281, 377, 391, 466, 490
SfaNI GCATC 2 cut(s) 139, 148
SspI AATATT 1 cut(s) 470
SspMI CTAG 1 cut(s) 461
StyD4I CCNGG 2 cut(s) 218, 315
TaaI ACNGT 2 cut(s) 57, 228
TaiI ACGT 1 cut(s) 377
TaqI TCGA 5 cut(s) 156, 231, 356, 377, 457
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
Tth111I GACNNNGTC 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.