RLG00000011405

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000210
Physical Location & Seq
Forward (+)
9163122 .. 9164753
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011405

Sequence Viewer

Length: 771 bp
ATGGCTGCTAGCAAACCAGCATTTTTCACGGTCCTCATTGGTGATTTCTGCCGGCACCTGAAAATGCCAACTGCGTTTGTAGACAAGTTAAGGGGAACATCACCTTGCAAATGTGTTCTTAGAGGTCCCAATGGACAAAGTTGGAATGTGGCACTGGAAGAGAGAGAAAGTGGTTTGTTCTTCTGTAAGGGTTGGCGGAAATTTGTGAAGTATCATTGTTTGGAAGAAGGGGACTTTTTGGTCTTCCATTATACTGGCAAACTTAAGTTTGATGTCACAATTTATGATGAAAGTGCCTGTGAAATGGATTTAGAAGTATCCAAGAGGAGAAGTCTCGCTGATGGTAGTAGTAATATAGGCGATCAAGTCATGTCTGGGAAGGCTGTAATTGAAGAAACACCAACTGGATTGACGGTGTTCCAGTCAAGGAATTCATGTTTCATGAAAACTTTGGAGACATTTAGACGTTATGAGCTGACGATTCCGCAGAAAATAGTGAAAGCTGAGGGTCTTAAGGAACACATGTCTCTAACGCTTCGAGATCCTAAAAAGAGATCACGGATTGTTGAGACTGATGTCACCATAGATAAACGTTTGAAGCTGACAAAAGGTTGGTGGCAAAGTTGCAGGGAGTTCAAGATCTCAATTGGGGACAAGGTTGTTTTGGAGTTTGTCAAGCCAAATGTGATTCAACTTCATATCTTCAGAGGCAAAGATGTGCTACTTTCAGGTCCTAAAGTTGTGGACTCTAGCAACTTTAGGCAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

257

Amino Acids

29.27

Weight (kDa)

9.29

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 19 - 95 3.3e-15 B3 DNA binding domain
B3 PF02362 148 - 236 1.8e-07 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 81
AciI CCGC 2 cut(s) 196, 485
AclI AACGTT 1 cut(s) 592
AclWI GGATC 1 cut(s) 536
AcsI RAATTY 2 cut(s) 200, 430
AcuI CTGAAG 1 cut(s) 688
AflII CTTAAG 2 cut(s) 263, 512
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 4 cut(s) 392, 598, 637, 692
AluBI AGCT 3 cut(s) 475, 503, 601
AluI AGCT 3 cut(s) 475, 503, 601
Alw26I GTCTC 4 cut(s) 338, 449, 531, 563
AlwI GGATC 1 cut(s) 536
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 200, 430
AspS9I GGNCC 3 cut(s) 31, 125, 731
AsuHPI GGTGA 3 cut(s) 53, 93, 571
AsuNHI GCTAGC 1 cut(s) 8
AvaII GGWCC 3 cut(s) 31, 125, 731
BanI GGYRCC 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 235
BbvCI CCTCAGC 1 cut(s) 504
BccI CCATC 1 cut(s) 335
BciVI GTATCC 1 cut(s) 328
BcoDI GTCTC 4 cut(s) 338, 449, 531, 563
BfaI CTAG 3 cut(s) 9, 750, 769
BfrI CTTAAG 2 cut(s) 263, 512
BfuI GTATCC 1 cut(s) 328
BglII AGATCT 1 cut(s) 639
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 3 cut(s) 31, 125, 731
BmgT120I GGNCC 3 cut(s) 31, 125, 731
BmiI GGNNCC 2 cut(s) 56, 127
BmtI GCTAGC 1 cut(s) 12
BoxI GACNNNNGTC 1 cut(s) 575
BpiI GAAGAC 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 504
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 4 cut(s) 159, 259, 409, 421
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 4 cut(s) 159, 259, 409, 421
BseRI GAGGAG 1 cut(s) 340
BshNI GGYRCC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 52
BslFI GGGAC 3 cut(s) 111, 245, 665
BsmAI GTCTC 4 cut(s) 338, 449, 531, 563
BsmFI GGGAC 3 cut(s) 111, 245, 665
Bsp143I GATC 4 cut(s) 361, 541, 554, 639
BspACI CCGC 2 cut(s) 196, 485
BspCNI CTCAG 1 cut(s) 496
BspHI TCATGA 1 cut(s) 441
BspLI GGNNCC 2 cut(s) 56, 127
BspOI GCTAGC 1 cut(s) 12
BspPI GGATC 1 cut(s) 536
BspT107I GGYRCC 1 cut(s) 54
BspTI CTTAAG 2 cut(s) 263, 512
BsrFI RCCGGY 1 cut(s) 51
BsrI ACTGG 4 cut(s) 159, 259, 409, 421
BssAI RCCGGY 1 cut(s) 51
BssMI GATC 4 cut(s) 361, 541, 554, 639
Bst4CI ACNGT 2 cut(s) 31, 415
Bst6I CTCTTC 1 cut(s) 153
BstAFI CTTAAG 2 cut(s) 263, 512
BstC8I GCNNGC 2 cut(s) 10, 53
BstDEI CTNAG 2 cut(s) 119, 504
BstKTI GATC 4 cut(s) 364, 544, 557, 642
BstMAI GTCTC 4 cut(s) 338, 449, 531, 563
BstMBI GATC 4 cut(s) 361, 541, 554, 639
BstNSI RCATGY 1 cut(s) 526
BstPAI GACNNNNGTC 1 cut(s) 575
BstV2I GAAGAC 1 cut(s) 235
BstX2I RGATCY 2 cut(s) 541, 639
BstXI CCANNNNNNTGG 1 cut(s) 254
BstYI RGATCY 2 cut(s) 541, 639
BsuI GTATCC 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 10, 53
CciI TCATGA 1 cut(s) 441
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 3 cut(s) 31, 125, 731
CviAII CATG 4 cut(s) 370, 435, 442, 523
CviJI RGCY 6 cut(s) 5, 383, 475, 503, 601, 679
CviKI_1 RGCY 6 cut(s) 5, 383, 475, 503, 601, 679
DdeI CTNAG 2 cut(s) 119, 504
DpnI GATC 4 cut(s) 363, 543, 556, 641
DpnII GATC 4 cut(s) 361, 541, 554, 639
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 211
Eco47I GGWCC 3 cut(s) 31, 125, 731
Eco57I CTGAAG 1 cut(s) 688
EcoO109I RGGNCCY 2 cut(s) 125, 731
EcoRI GAATTC 1 cut(s) 430
FaeI CATG 4 cut(s) 373, 438, 445, 526
FaqI GGGAC 3 cut(s) 111, 245, 665
FatI CATG 4 cut(s) 369, 434, 441, 522
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 3 cut(s) 9, 750, 769
GluI GCNGC 1 cut(s) 6
HapII CCGG 1 cut(s) 52
Hin1II CATG 4 cut(s) 373, 438, 445, 526
HinfI GANTC 3 cut(s) 481, 688, 746
HpaII CCGG 1 cut(s) 52
HphI GGTGA 3 cut(s) 53, 93, 571
Hpy166II GTNNAC 2 cut(s) 82, 745
Hpy188I TCNGA 1 cut(s) 707
Hpy188III TCNNGA 3 cut(s) 442, 539, 637
Hpy8I GTNNAC 2 cut(s) 82, 745
HpyAV CCTTC 2 cut(s) 221, 373
HpyCH4III ACNGT 2 cut(s) 31, 415
HpyCH4IV ACGT 2 cut(s) 466, 592
HpyCH4V TGCA 2 cut(s) 108, 627
HpyF3I CTNAG 2 cut(s) 119, 504
HpySE526I ACGT 2 cut(s) 466, 592
Hsp92II CATG 4 cut(s) 373, 438, 445, 526
KroI GCCGGC 1 cut(s) 51
KroNI GCCGGC 1 cut(s) 53
Kzo9I GATC 4 cut(s) 361, 541, 554, 639
MaeI CTAG 3 cut(s) 9, 750, 769
MaeII ACGT 2 cut(s) 466, 592
MaeIII GTNAC 2 cut(s) 274, 577
MalI GATC 4 cut(s) 363, 543, 556, 641
MboI GATC 4 cut(s) 361, 541, 554, 639
MboII GAAGA 6 cut(s) 170, 172, 235, 236, 404, 694
MfeI CAATTG 1 cut(s) 645
MflI RGATCY 2 cut(s) 541, 639
MluCI AATT 5 cut(s) 200, 279, 387, 430, 645
MlyI GAGTC 1 cut(s) 740
MmeI TCCRAC 1 cut(s) 122
MnlI CCTC 5 cut(s) 44, 116, 318, 499, 701
MroNI GCCGGC 1 cut(s) 51
MseI TTAA 3 cut(s) 89, 264, 513
MspCI CTTAAG 2 cut(s) 263, 512
MspI CCGG 1 cut(s) 52
MunI CAATTG 1 cut(s) 645
NaeI GCCGGC 1 cut(s) 53
NdeII GATC 4 cut(s) 361, 541, 554, 639
NgoMIV GCCGGC 1 cut(s) 51
NheI GCTAGC 1 cut(s) 8
NlaIII CATG 4 cut(s) 373, 438, 445, 526
NlaIV GGNNCC 2 cut(s) 56, 127
NmuCI GTSAC 2 cut(s) 274, 577
NspI RCATGY 1 cut(s) 526
PagI TCATGA 1 cut(s) 441
PciI ACATGT 1 cut(s) 522
PdiI GCCGGC 1 cut(s) 53
PfeI GAWTC 2 cut(s) 481, 688
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 740
PpsI GAGTC 1 cut(s) 740
PpuMI RGGWCCY 2 cut(s) 125, 731
PscI ACATGT 1 cut(s) 522
PshAI GACNNNNGTC 1 cut(s) 575
Psp1406I AACGTT 1 cut(s) 592
Psp5II RGGWCCY 2 cut(s) 125, 731
PspN4I GGNNCC 2 cut(s) 56, 127
PspPI GGNCC 3 cut(s) 31, 125, 731
PspPPI RGGWCCY 2 cut(s) 125, 731
PsuI RGATCY 2 cut(s) 541, 639
SaqAI TTAA 3 cut(s) 89, 264, 513
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 4 cut(s) 361, 541, 554, 639
Sau96I GGNCC 3 cut(s) 31, 125, 731
SchI GAGTC 1 cut(s) 740
SinI GGWCC 3 cut(s) 31, 125, 731
SmlI CTYRAG 2 cut(s) 263, 512
SmoI CTYRAG 2 cut(s) 263, 512
Sse9I AATT 5 cut(s) 200, 279, 387, 430, 645
SsiI CCGC 2 cut(s) 196, 485
SspMI CTAG 3 cut(s) 9, 750, 769
TaaI ACNGT 2 cut(s) 31, 415
TaiI ACGT 2 cut(s) 469, 595
TaqI TCGA 1 cut(s) 538
TasI AATT 5 cut(s) 200, 279, 387, 430, 645
TfiI GAWTC 2 cut(s) 481, 688
Tru1I TTAA 3 cut(s) 89, 264, 513
Tru9I TTAA 3 cut(s) 89, 264, 513
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 2 cut(s) 274, 577
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 274, 577
TspDTI ATGAA 5 cut(s) 303, 423, 430, 458, 686
TspGWI ACGGA 1 cut(s) 574
TspRI CASTG 1 cut(s) 159
Vha464I CTTAAG 2 cut(s) 263, 512
VpaK11BI GGWCC 3 cut(s) 31, 125, 731
XapI RAATTY 2 cut(s) 200, 430
XceI RCATGY 1 cut(s) 526
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 3 cut(s) 9, 750, 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.