Rroxscaffold_1G00047010

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000210
Physical Location & Seq
Reverse (-)
66482549 .. 66483685
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00047010.1

Sequence Viewer

Length: 285 bp
ATGGTTAAAGGACTTACGAGTAAGAAGACTGAGAAGATTCAAGATCCCACTGGGAGATCATGGCTCGTTAAACTTCCTCTAGAATGGTATGAATCCAAAGGGTACAGATCTAGTTATGATCGCTGTCACATGGGAAGAGGTTGGAAAGATTGTCGCAAAGCCAACCAGATATATCGCATGGGGACAACCTCATTTTTTGAGTTTGTAAAGAACAGCATAATGCAACTTCATATCTTCAAGAATTGGCATTCTGTGGTACTTGATGCTCCCAACTTCAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

94

Amino Acids

11.13

Weight (kDa)

9.85

Isoelectric Point (pI)

24.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 38
AfaI GTAC 2 cut(s) 104, 258
AgsI TTSAA 3 cut(s) 41, 238, 277
AlwI GGATC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 32
BfaI CTAG 2 cut(s) 80, 111
BglII AGATCT 1 cut(s) 107
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 55
BslFI GGGAC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 196
BsmI GAATGC 1 cut(s) 247
Bsp143I GATC 4 cut(s) 43, 56, 107, 118
BspCNI CTCAG 1 cut(s) 22
BspPI GGATC 1 cut(s) 38
BsrI ACTGG 1 cut(s) 55
BssMI GATC 4 cut(s) 43, 56, 107, 118
Bst6I CTCTTC 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 30
BstKTI GATC 4 cut(s) 46, 59, 110, 121
BstMBI GATC 4 cut(s) 43, 56, 107, 118
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 2 cut(s) 43, 107
BstYI RGATCY 2 cut(s) 43, 107
BtsIMutI CAGTG 1 cut(s) 48
Csp6I GTAC 2 cut(s) 103, 257
CviAII CATG 3 cut(s) 60, 130, 178
CviJI RGCY 2 cut(s) 64, 161
CviKI_1 RGCY 2 cut(s) 64, 161
CviQI GTAC 2 cut(s) 103, 257
DdeI CTNAG 1 cut(s) 30
DpnI GATC 4 cut(s) 45, 58, 109, 120
DpnII GATC 4 cut(s) 43, 56, 107, 118
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
FaeI CATG 3 cut(s) 63, 133, 181
FaiI YATR 9 cut(s) 61, 90, 117, 131, 172, 179, 218, 231, 283
FaqI GGGAC 1 cut(s) 196
FatI CATG 3 cut(s) 59, 129, 177
FspBI CTAG 2 cut(s) 80, 111
Hin1II CATG 3 cut(s) 63, 133, 181
HinfI GANTC 2 cut(s) 37, 92
Hpy188III TCNNGA 3 cut(s) 41, 80, 238
HpyCH4V TGCA 1 cut(s) 223
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 3 cut(s) 63, 133, 181
Kzo9I GATC 4 cut(s) 43, 56, 107, 118
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 2 cut(s) 36, 179
LweI GCATC 1 cut(s) 253
MaeI CTAG 2 cut(s) 80, 111
MaeIII GTNAC 1 cut(s) 125
MalI GATC 4 cut(s) 45, 58, 109, 120
MboI GATC 4 cut(s) 43, 56, 107, 118
MboII GAAGA 4 cut(s) 37, 46, 147, 226
MflI RGATCY 2 cut(s) 43, 107
MluCI AATT 1 cut(s) 241
MmeI TCCRAC 1 cut(s) 122
MnlI CCTC 3 cut(s) 87, 131, 199
MseI TTAA 2 cut(s) 6, 69
Mva1269I GAATGC 1 cut(s) 247
NdeII GATC 4 cut(s) 43, 56, 107, 118
NlaIII CATG 3 cut(s) 63, 133, 181
NmuCI GTSAC 1 cut(s) 125
PctI GAATGC 1 cut(s) 247
PfeI GAWTC 2 cut(s) 37, 92
PsuI RGATCY 2 cut(s) 43, 107
RsaI GTAC 2 cut(s) 104, 258
RsaNI GTAC 2 cut(s) 103, 257
SaqAI TTAA 2 cut(s) 6, 69
Sau3AI GATC 4 cut(s) 43, 56, 107, 118
SetI ASST 2 cut(s) 142, 191
SfaNI GCATC 1 cut(s) 253
Sse9I AATT 1 cut(s) 241
SspMI CTAG 2 cut(s) 80, 111
TasI AATT 1 cut(s) 241
TfiI GAWTC 2 cut(s) 37, 92
Tru1I TTAA 2 cut(s) 6, 69
Tru9I TTAA 2 cut(s) 6, 69
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 105, 218
TspRI CASTG 1 cut(s) 55
XbaI TCTAGA 1 cut(s) 79
XspI CTAG 2 cut(s) 80, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.