RchiOBHm_Chr5g0033031

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000210
Physical Location & Seq
Forward (+)
26837931 .. 26840025
2095 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31215

Sequence Viewer

Length: 675 bp
ATGTTGATCTGCCCTAGTGGAAAATGCTGGAATGTGGAACTGGAAAGAACAGAGAATGGCTTGTTCTTTCACAATGATGGTTGGCAGACTTTTGTGAAGGATCACCTTTTACAAGTTGGGGACTTTTTGGTTTTCCGTTACGACGGTGAATCAAATTTTGAGGTTACATTATATGATAGAACTTGTTGTGAGAAAGATGTTAAAGTACCCAAGAGGAGAAGGGGCCGTCCTGCGGCGAATGAAAGAAACTCAGCTCAAGTTATTAACCTTGAAACCGAAAACTACAACAAAAAAGCTGAAAAGAAAACCAGCATTGATGGCAGAAGAAGTCGAAATTATGTCATGCCAGGGAAGGGGATTAGATGTGAGGGTGTGAATCAAACATCAAATGGATCCATCTTGTTCAAATCGGAGAATTCATATTTGAAACTAACTTTGAAGAGAAAGGCTCAACAATATGTGGTGGCAATTGAAGTAGCCATAACTGAAGGTCTTATGCATAAGAAGACTGTAGAAATTCAAGACCCAACTGGCAGATCATGGCCTACTAAACTTGTGACAGTTACAAGTAAACAACAGAACCGTTGGAGTAATGATCGCTTGGACATGTCAACTGGTTGGAGTGAATGTTGTAAAGCTAACAAGATTTCCGCTGGGGACAACTGTCATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

224

Amino Acids

25.69

Weight (kDa)

9.16

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 5 - 59 2.3e-11 B3 DNA binding domain
B3 PF02362 167 - 224 3.8e-08 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 233, 651
AclWI GGATC 3 cut(s) 108, 387, 400
AcsI RAATTY 3 cut(s) 154, 415, 516
AcuI CTGAAG 1 cut(s) 507
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 2 cut(s) 232, 353
AflIII ACRYGT 1 cut(s) 606
AgsI TTSAA 6 cut(s) 272, 406, 427, 439, 473, 521
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 3 cut(s) 254, 296, 638
AluI AGCT 3 cut(s) 254, 296, 638
AlwI GGATC 3 cut(s) 108, 387, 400
AoxI GGCC 2 cut(s) 223, 542
ApoI RAATTY 3 cut(s) 154, 415, 516
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 2 cut(s) 95, 158
BamHI GGATCC 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 512
BccI CCATC 3 cut(s) 71, 311, 404
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 348
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 510
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 224, 394
BmrFI CCNGG 1 cut(s) 348
BoxI GACNNNNGTC 1 cut(s) 663
BpiI GAAGAC 1 cut(s) 512
BplI GAGNNNNNCTC 2 cut(s) 433, 465
BpuEI CTTGAG 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 347
BsaXI ACNNNNNCTCC 2 cut(s) 613, 643
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 353
Bse1I ACTGG 3 cut(s) 45, 535, 619
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 347
BseLI CCNNNNNNNGG 2 cut(s) 232, 353
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 3 cut(s) 45, 535, 619
BseRI GAGGAG 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 653
BshFI GGCC 2 cut(s) 225, 544
BslFI GGGAC 2 cut(s) 134, 671
BslI CCNNNNNNNGG 2 cut(s) 232, 353
BsmFI GGGAC 2 cut(s) 134, 671
BsnI GGCC 2 cut(s) 225, 544
Bsp143I GATC 5 cut(s) 6, 100, 392, 536, 595
BspACI CCGC 2 cut(s) 233, 651
BspANI GGCC 2 cut(s) 225, 544
BspCNI CTCAG 1 cut(s) 263
BspLI GGNNCC 2 cut(s) 224, 394
BspPI GGATC 3 cut(s) 108, 387, 400
BsrI ACTGG 3 cut(s) 45, 535, 619
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 5 cut(s) 6, 100, 392, 536, 595
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 5 cut(s) 146, 511, 562, 584, 665
Bst6I CTCTTC 1 cut(s) 434
BstDEI CTNAG 1 cut(s) 250
BstKTI GATC 5 cut(s) 9, 103, 395, 539, 598
BstMBI GATC 5 cut(s) 6, 100, 392, 536, 595
BstMWI GCNNNNNNNGC 1 cut(s) 318
BstNI CCWGG 1 cut(s) 348
BstNSI RCATGY 1 cut(s) 610
BstPAI GACNNNNGTC 1 cut(s) 663
BstSCI CCNGG 1 cut(s) 346
BstSFI CTRYAG 1 cut(s) 510
BstV2I GAAGAC 1 cut(s) 512
BstX2I RGATCY 1 cut(s) 392
BstYI RGATCY 1 cut(s) 392
BsuRI GGCC 2 cut(s) 225, 544
Cfr13I GGNCC 1 cut(s) 223
Csp6I GTAC 1 cut(s) 206
CviAII CATG 3 cut(s) 343, 540, 607
CviJI RGCY 8 cut(s) 60, 225, 254, 296, 449, 479, 544, 638
CviKI_1 RGCY 8 cut(s) 60, 225, 254, 296, 449, 479, 544, 638
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 1 cut(s) 250
DpnI GATC 5 cut(s) 8, 102, 394, 538, 597
DpnII GATC 5 cut(s) 6, 100, 392, 536, 595
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Eco57I CTGAAG 1 cut(s) 507
EcoRI GAATTC 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 346
EcoT22I ATGCAT 1 cut(s) 501
FaeI CATG 3 cut(s) 346, 543, 610
FaqI GGGAC 2 cut(s) 134, 671
FatI CATG 3 cut(s) 342, 539, 606
Fnu4HI GCNGC 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 15
GluI GCNGC 1 cut(s) 234
GsaI CCCAGC 1 cut(s) 657
HaeIII GGCC 2 cut(s) 225, 544
Hin1II CATG 3 cut(s) 346, 543, 610
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HinfI GANTC 2 cut(s) 149, 376
HphI GGTGA 2 cut(s) 95, 158
Hpy166II GTNNAC 2 cut(s) 572, 612
Hpy188I TCNGA 1 cut(s) 412
Hpy188III TCNNGA 1 cut(s) 521
Hpy8I GTNNAC 2 cut(s) 572, 612
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 4 cut(s) 91, 213, 346, 482
HpyCH4III ACNGT 5 cut(s) 146, 511, 562, 584, 665
HpyCH4V TGCA 1 cut(s) 499
HpyF10VI GCNNNNNNNGC 1 cut(s) 318
HpyF3I CTNAG 1 cut(s) 250
Hsp92II CATG 3 cut(s) 346, 543, 610
Kzo9I GATC 5 cut(s) 6, 100, 392, 536, 595
LpnPI CCDG 9 cut(s) 13, 26, 243, 322, 333, 360, 516, 600, 639
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 4 cut(s) 137, 163, 556, 562
MalI GATC 5 cut(s) 8, 102, 394, 538, 597
MboI GATC 5 cut(s) 6, 100, 392, 536, 595
MboII GAAGA 3 cut(s) 336, 451, 517
MfeI CAATTG 1 cut(s) 468
MflI RGATCY 1 cut(s) 392
MluCI AATT 5 cut(s) 154, 334, 415, 468, 516
MmeI TCCRAC 2 cut(s) 566, 599
MnlI CCTC 3 cut(s) 154, 207, 361
Mph1103I ATGCAT 1 cut(s) 501
MseI TTAA 2 cut(s) 201, 264
MslI CAYNNNNRTG 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 653
MspR9I CCNGG 1 cut(s) 348
MunI CAATTG 1 cut(s) 468
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 1 cut(s) 318
NdeII GATC 5 cut(s) 6, 100, 392, 536, 595
NlaIII CATG 3 cut(s) 346, 543, 610
NlaIV GGNNCC 2 cut(s) 224, 394
NmuCI GTSAC 1 cut(s) 556
NsiI ATGCAT 1 cut(s) 501
NspI RCATGY 1 cut(s) 610
PciI ACATGT 1 cut(s) 606
PfeI GAWTC 2 cut(s) 149, 376
PkrI GCNGC 1 cut(s) 235
PscI ACATGT 1 cut(s) 606
PshAI GACNNNNGTC 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 346
PspFI CCCAGC 1 cut(s) 653
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 2 cut(s) 224, 394
PspPI GGNCC 1 cut(s) 223
PsuI RGATCY 1 cut(s) 392
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 2 cut(s) 201, 264
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 5 cut(s) 6, 100, 392, 536, 595
Sau96I GGNCC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 348
SetI ASST 7 cut(s) 108, 165, 256, 270, 298, 493, 640
SfcI CTRYAG 1 cut(s) 510
SmiMI CAYNNNNRTG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
Sse9I AATT 5 cut(s) 154, 334, 415, 468, 516
SsiI CCGC 2 cut(s) 233, 651
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 346
TaaI ACNGT 5 cut(s) 146, 511, 562, 584, 665
TaqI TCGA 1 cut(s) 331
TasI AATT 5 cut(s) 154, 334, 415, 468, 516
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 2 cut(s) 149, 376
Tru1I TTAA 2 cut(s) 201, 264
Tru9I TTAA 2 cut(s) 201, 264
TseFI GTSAC 1 cut(s) 556
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 2 cut(s) 255, 408
TspGWI ACGGA 1 cut(s) 125
XapI RAATTY 3 cut(s) 154, 415, 516
XceI RCATGY 1 cut(s) 610
XspI CTAG 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.