RchiOBHm_Chr1g0356381

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000210
Physical Location & Seq
Reverse (-)
48884576 .. 48885089
514 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58175

Sequence Viewer

Length: 402 bp
ATGCCAACAGCTTTTGTCAACGACTTCAATGGACCAGCACTATGCAAACTTCGAGGCCCTAATGGAAAATGCTGGGACGTAAAATTGGAAGAGAAAAACAATGATCTATTCTTCCATAAAGGCTGGAAGAAATTTGTGAAGGATAACTATTTGGAGGAAGGAGACTTTCTGGTTTTCAATTATGATGGCAATTCATTGTTCAGTGTGACAATCTATGATAAAAGTGCATGTGAATTAATGGACATGGAAGAAGCCAAGAGAAAGAGAAGTACTGACTGTTTTGTTGGTCAAATGAGGGATTATGTCATGCCTGGGGAGACAAGACTCAGAATCATTGAGTTCAAATCAGAGCATCTTTGCTTTAAGAGAACTATGGAGACTCACAGACTGTATCATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

133

Amino Acids

15.76

Weight (kDa)

6.89

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 2 - 74 1.1e-16 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 1 cut(s) 271
AgsI TTSAA 3 cut(s) 28, 178, 343
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw26I GTCTC 3 cut(s) 156, 311, 371
AoxI GGCC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 131
AseI ATTAAT 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 32, 56
AvaII GGWCC 1 cut(s) 32
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 3 cut(s) 156, 311, 371
BmcAI AGTACT 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 32, 56
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 311
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 311
BseMII CTCAG 1 cut(s) 340
BseYI CCCAGC 1 cut(s) 72
BshFI GGCC 1 cut(s) 57
BslFI GGGAC 1 cut(s) 89
BsmAI GTCTC 3 cut(s) 156, 311, 371
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 103
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 278, 390
Bst6I CTCTTC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 326
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 3 cut(s) 156, 311, 371
BstMBI GATC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 310
BsuRI GGCC 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 32, 56
Csp6I GTAC 1 cut(s) 270
CviAII CATG 3 cut(s) 228, 244, 307
CviJI RGCY 4 cut(s) 11, 57, 123, 254
CviKI_1 RGCY 4 cut(s) 11, 57, 123, 254
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 1 cut(s) 326
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 32
EcoO109I RGGNCCY 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 310
FaeI CATG 3 cut(s) 231, 247, 310
FaiI YATR 9 cut(s) 43, 117, 183, 216, 229, 245, 303, 308, 374
FaqI GGGAC 1 cut(s) 89
FatI CATG 3 cut(s) 227, 243, 306
GsaI CCCAGC 1 cut(s) 76
HaeIII GGCC 1 cut(s) 57
Hin1II CATG 3 cut(s) 231, 247, 310
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 3 cut(s) 324, 330, 379
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 329, 349
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 2 cut(s) 133, 152
HpyCH4III ACNGT 2 cut(s) 278, 390
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 2 cut(s) 45, 227
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 3 cut(s) 231, 247, 310
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 6 cut(s) 48, 58, 109, 155, 297, 324
LweI GCATC 1 cut(s) 361
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 4 cut(s) 101, 103, 139, 260
MluCI AATT 5 cut(s) 83, 131, 178, 190, 233
MlyI GAGTC 2 cut(s) 318, 373
MnlI CCTC 3 cut(s) 47, 148, 288
MseI TTAA 2 cut(s) 236, 363
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
NdeII GATC 1 cut(s) 103
NlaIII CATG 3 cut(s) 231, 247, 310
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 231
PfeI GAWTC 1 cut(s) 330
PleI GAGTC 2 cut(s) 318, 373
PpsI GAGTC 2 cut(s) 318, 373
PshBI ATTAAT 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 72
PspGI CCWGG 1 cut(s) 310
PspPI GGNCC 2 cut(s) 32, 56
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SaqAI TTAA 2 cut(s) 236, 363
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 2 cut(s) 32, 56
ScaI AGTACT 1 cut(s) 271
SchI GAGTC 2 cut(s) 318, 373
ScrFI CCNGG 1 cut(s) 312
SetI ASST 2 cut(s) 13, 81
SfaNI GCATC 1 cut(s) 361
SinI GGWCC 1 cut(s) 32
Sse9I AATT 5 cut(s) 83, 131, 178, 190, 233
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 2 cut(s) 278, 390
TaiI ACGT 1 cut(s) 81
TaqI TCGA 1 cut(s) 52
TasI AATT 5 cut(s) 83, 131, 178, 190, 233
TatI WGTACW 1 cut(s) 269
TfiI GAWTC 1 cut(s) 330
Tru1I TTAA 2 cut(s) 236, 363
Tru9I TTAA 2 cut(s) 236, 363
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 183
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 32
VspI ATTAAT 1 cut(s) 236
XapI RAATTY 1 cut(s) 131
XceI RCATGY 1 cut(s) 231
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.