Rw6G032430

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000210
Physical Location & Seq
Reverse (-)
56591226 .. 56593385
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G032430.1

Sequence Viewer

Length: 732 bp
ATGGCTAGGAAGACTGAGCATCCAGCAAGAAGAGAAGCATTTTTCAAGGCCCTTATGGGTGATTTTTCTCAGCATCTGCGTATACCATCAGCGTTTATCAAGAACTTGAACAGACGCTCACCGCACATATGTCGTCTTAAAGGCCCTAGTGGACAATGTTGGGTTGTGGAATTGGAAAAGAGAGGCAATCGATTGTTTTTCCATAAGGGTTGGGAGGAATTTGTGAATTATGATGGTGTGTCCATGTTTGATGTGACAATATATGACAAAACTTTCTGTGAGAAGAATGTAAAAGCAGCCAAGAGGAGAAGTGACAGTAATGGTATTGCTGCCAAAAGAAGTGGTAAGTTGCCAAGGAGAAGTGACAGTCATGCTGACAAAAGAAGGGCAGTTGATGATGTAGAAGAAACTTCTCTTCGACCCATTCCATTCCAATCAAAGAATTCTTTTATCTGTAGAGTTTTGAAGGCACGTACATTGTATGAAGTGTATATTCCGACGGAAGTAGTCATAGCGGAAGGTTTAAAGGCTGGGATGGCCATAAAGATTCAAGATACATTTGGGATGTCATGGCATCTTAGACTCCGTGCTAACCATGATCGTGTGCTGATGAGGTCGGGCTTGTCAAAGATATGCAAAGCAAACAAAACTTCACATGGGGACACTGTGATTTTTGAGTTTGTCAAGCCGAGAGTGGTGCAACTTCATATTATCAGAGCAGGAGCTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

243

Amino Acids

27.92

Weight (kDa)

10.14

Isoelectric Point (pI)

55.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 14 - 85 5.2e-09 B3 DNA binding domain
B3 PF02362 163 - 237 1.4e-09 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 82
AciI CCGC 2 cut(s) 122, 515
AcoI YGGCCR 1 cut(s) 537
AcsI RAATTY 2 cut(s) 218, 442
AfaI GTAC 1 cut(s) 475
AgsI TTSAA 4 cut(s) 46, 109, 466, 551
AluBI AGCT 1 cut(s) 725
AluI AGCT 1 cut(s) 725
AlwNI CAGNNNCTG 1 cut(s) 76
AoxI GGCC 3 cut(s) 48, 142, 537
ApeKI GCWGC 2 cut(s) 296, 329
ApoI RAATTY 2 cut(s) 218, 442
AspS9I GGNCC 2 cut(s) 49, 143
AsuHPI GGTGA 2 cut(s) 71, 111
BalI TGGCCA 1 cut(s) 539
BbsI GAAGAC 1 cut(s) 17
BbvI GCAGC 2 cut(s) 308, 316
BccI CCATC 3 cut(s) 94, 227, 529
BcgI CGANNNNNNTGC 4 cut(s) 113, 147, 679, 713
BfaI CTAG 3 cut(s) 6, 147, 730
BfmI CTRYAG 1 cut(s) 454
BisI GCNGC 2 cut(s) 297, 330
BlsI GCNGC 2 cut(s) 298, 331
BmgT120I GGNCC 2 cut(s) 49, 143
BmsI GCATC 3 cut(s) 28, 82, 583
BpiI GAAGAC 1 cut(s) 17
Bsa29I ATCGAT 1 cut(s) 190
BsaAI YACGTR 1 cut(s) 473
BsaJI CCNNGG 1 cut(s) 353
BseCI ATCGAT 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 3 cut(s) 19, 540, 570
BseMII CTCAG 2 cut(s) 6, 83
BseRI GAGGAG 1 cut(s) 319
BseXI GCAGC 2 cut(s) 308, 316
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 3 cut(s) 50, 144, 539
BshVI ATCGAT 1 cut(s) 190
BslFI GGGAC 1 cut(s) 674
BsmFI GGGAC 1 cut(s) 674
BsnI GGCC 3 cut(s) 50, 144, 539
Bsp143I GATC 1 cut(s) 598
BspACI CCGC 2 cut(s) 122, 515
BspANI GGCC 3 cut(s) 50, 144, 539
BspCNI CTCAG 2 cut(s) 7, 82
BspDI ATCGAT 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 1 cut(s) 598
BssNAI GTATAC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 353
Bst1107I GTATAC 1 cut(s) 83
Bst4CI ACNGT 3 cut(s) 317, 368, 667
Bst6I CTCTTC 2 cut(s) 25, 420
BstBAI YACGTR 1 cut(s) 473
BstDEI CTNAG 3 cut(s) 15, 69, 578
BstF5I GGATG 3 cut(s) 19, 540, 570
BstKTI GATC 1 cut(s) 601
BstMBI GATC 1 cut(s) 598
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstSFI CTRYAG 1 cut(s) 454
BstV1I GCAGC 2 cut(s) 308, 316
BstV2I GAAGAC 1 cut(s) 17
BstZ17I GTATAC 1 cut(s) 83
Bsu15I ATCGAT 1 cut(s) 190
BsuRI GGCC 3 cut(s) 50, 144, 539
BsuTUI ATCGAT 1 cut(s) 190
BtsCI GGATG 3 cut(s) 19, 540, 570
BtsIMutI CAGTG 1 cut(s) 663
CaiI CAGNNNCTG 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 49, 143
ClaI ATCGAT 1 cut(s) 190
CseI GACGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 474
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 5 cut(s) 244, 371, 570, 596, 656
CviJI RGCY 9 cut(s) 5, 50, 144, 299, 530, 539, 621, 688, 725
CviKI_1 RGCY 9 cut(s) 5, 50, 144, 299, 530, 539, 621, 688, 725
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 3 cut(s) 15, 69, 578
DpnI GATC 1 cut(s) 600
DpnII GATC 1 cut(s) 598
DraI TTTAAA 1 cut(s) 525
EaeI YGGCCR 1 cut(s) 537
Eam1104I CTCTTC 2 cut(s) 25, 420
EarI CTCTTC 2 cut(s) 25, 420
Eco130I CCWWGG 1 cut(s) 353
EcoO109I RGGNCCY 2 cut(s) 49, 143
EcoRI GAATTC 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 5 cut(s) 247, 374, 573, 599, 659
FaqI GGGAC 1 cut(s) 674
FatI CATG 5 cut(s) 243, 370, 569, 595, 655
FauNDI CATATG 1 cut(s) 128
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 297, 330
FokI GGATG 3 cut(s) 6, 547, 577
Fsp4HI GCNGC 2 cut(s) 297, 330
FspBI CTAG 3 cut(s) 6, 147, 730
GluI GCNGC 2 cut(s) 297, 330
GsaI CCCAGC 1 cut(s) 534
HaeIII GGCC 3 cut(s) 50, 144, 539
HgaI GACGC 1 cut(s) 123
Hin1II CATG 5 cut(s) 247, 374, 573, 599, 659
HinfI GANTC 2 cut(s) 547, 582
HphI GGTGA 2 cut(s) 71, 111
Hpy166II GTNNAC 2 cut(s) 83, 152
Hpy188I TCNGA 2 cut(s) 498, 716
Hpy188III TCNNGA 2 cut(s) 100, 551
Hpy8I GTNNAC 2 cut(s) 83, 152
Hpy99I CGWCG 1 cut(s) 502
HpyAV CCTTC 3 cut(s) 378, 460, 512
HpyCH4III ACNGT 3 cut(s) 317, 368, 667
HpyCH4IV ACGT 1 cut(s) 472
HpyCH4V TGCA 2 cut(s) 636, 700
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpyF3I CTNAG 3 cut(s) 15, 69, 578
HpySE526I ACGT 1 cut(s) 472
Hsp92II CATG 5 cut(s) 247, 374, 573, 599, 659
Kzo9I GATC 1 cut(s) 598
LmnI GCTCC 1 cut(s) 722
LpnPI CCDG 3 cut(s) 36, 516, 705
Lsp1109I GCAGC 2 cut(s) 308, 316
LweI GCATC 3 cut(s) 28, 82, 583
MaeI CTAG 3 cut(s) 6, 147, 730
MaeII ACGT 1 cut(s) 472
MaeIII GTNAC 3 cut(s) 253, 311, 362
MalI GATC 1 cut(s) 600
MboI GATC 1 cut(s) 598
MboII GAAGA 5 cut(s) 22, 42, 295, 407, 416
MlsI TGGCCA 1 cut(s) 539
MluCI AATT 4 cut(s) 170, 218, 226, 442
MluNI TGGCCA 1 cut(s) 539
MlyI GAGTC 1 cut(s) 576
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 4 cut(s) 176, 208, 297, 606
Mox20I TGGCCA 1 cut(s) 539
MscI TGGCCA 1 cut(s) 539
MseI TTAA 2 cut(s) 138, 524
MslI CAYNNNNRTG 1 cut(s) 600
Msp20I TGGCCA 1 cut(s) 539
MwoI GCNNNNNNNGC 1 cut(s) 536
NdeI CATATG 1 cut(s) 128
NdeII GATC 1 cut(s) 598
NlaIII CATG 5 cut(s) 247, 374, 573, 599, 659
NmeAIII GCCGAG 1 cut(s) 714
NmuCI GTSAC 3 cut(s) 253, 311, 362
PfeI GAWTC 1 cut(s) 547
PkrI GCNGC 2 cut(s) 298, 331
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
Ppu21I YACGTR 1 cut(s) 473
PspFI CCCAGC 1 cut(s) 530
PspPI GGNCC 2 cut(s) 49, 143
PstNI CAGNNNCTG 1 cut(s) 76
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
RseI CAYNNNNRTG 1 cut(s) 600
SaqAI TTAA 2 cut(s) 138, 524
SatI GCNGC 2 cut(s) 297, 330
Sau3AI GATC 1 cut(s) 598
Sau96I GGNCC 2 cut(s) 49, 143
SchI GAGTC 1 cut(s) 576
SetI ASST 4 cut(s) 475, 523, 617, 727
SfaNI GCATC 3 cut(s) 28, 82, 583
SfcI CTRYAG 1 cut(s) 454
SmiMI CAYNNNNRTG 1 cut(s) 600
Sse9I AATT 4 cut(s) 170, 218, 226, 442
SsiI CCGC 2 cut(s) 122, 515
SspMI CTAG 3 cut(s) 6, 147, 730
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 3 cut(s) 317, 368, 667
TaiI ACGT 1 cut(s) 475
TaqI TCGA 2 cut(s) 190, 418
TasI AATT 4 cut(s) 170, 218, 226, 442
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 2 cut(s) 138, 524
Tru9I TTAA 2 cut(s) 138, 524
TscAI CASTG 1 cut(s) 670
TseFI GTSAC 3 cut(s) 253, 311, 362
TseI GCWGC 2 cut(s) 296, 329
Tsp45I GTSAC 3 cut(s) 253, 311, 362
TspDTI ATGAA 2 cut(s) 498, 695
TspGWI ACGGA 2 cut(s) 515, 575
TspRI CASTG 1 cut(s) 670
XapI RAATTY 2 cut(s) 218, 442
XmiI GTMKAC 1 cut(s) 82
XspI CTAG 3 cut(s) 6, 147, 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.