Rh1BG031400

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000210
Physical Location & Seq
Forward (+)
4249762 .. 4253519
3758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG031400.1

Sequence Viewer

Length: 1074 bp
ATGACAGAACACAAACGATACCCATTTAATCTCTTTGGAGTCAATGCTTGCTCATCTACCATTTCATATATCTCTTTTGGGGCTTCAAGGCATTCATTACCTTTCAGATTTTACATTGAAGAGACTTCTGCATTTCCTGTTCTTCCTAAGGTAACATCCTCAAATGGCTTGTACAGTACCAGTGGTAGCATTTTTTCAGGTCCTAGCTTGATGTGGTCTTTGTCTATGGTGAAGTTGGTGAAGTTGACAACTCTGTTGCTTATGGATCCATATCGTGAAGGGAGAGTTCTGTATTTCCTGTTCTTGTTCAAAACTTCAAGGTATCATCTTCAAATGGCTCGTTCAGTACCAGTGCCCGCCTTTTTCCAGGTCCTTGTTGGTGATTTCTCTGAGAAACTGAAAATGCCAACAGCTTTTGTCAACCACTTCAATGGATCAGCACTTTGCAAACTTCGAGGCCCTAGTGGAAAGTGCTGGGATGTAATATTGGAAGAGGAAAATAATGATATTTTCTTCCATAAAGGCTGGAATAAATTTGTGAATGATAATTTTTTGGAGGAAGGACACATTTTGGTTTTCAATTATGATGGCAATTCTTGGTTCAATGTGACAATCTATGATAAAAGTGCATGTGAAATGGACATGGAAGCAGCCAAGACAAAGAGAAGTACTGGCGGTCTTGATGGTCAAAGGAGGGATTATGTCATGCCTGGGGAGACAATAATCAGAATCATTGAGTTCAAATCAGAGCATTTTTGCTTTAAGAGAACTATGGAGAAGCACAGACTGTATCAGCTGAGCATTCCAATAATAATAGCCAAGGCTAAGGGTCTCATAAGCAAGAGGACTATAGAGCTTCGGGATCCAAGCAACAGATCATGGCCTATTAAAGTGACTCGCATGGGAGATGGTCGTTTACTTATGAACAAAGGCTGGCGTGCTTGTAGCAAGTGGAACCAGATTAAGAAAGGGCACACCATTGTTTTTGAGTTTGTGAAGGGACATGTGAAGCTTCACATCGTTAGAGATGAGGGGTGTGAGGTGATACTCACAGGTCCTAATGTCGTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

357

Amino Acids

40.99

Weight (kDa)

9.42

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 129 - 208 3.9e-14 B3 DNA binding domain
B3 PF02362 260 - 338 1e-10 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 357, 675
AclWI GGATC 5 cut(s) 260, 273, 442, 857, 870
AcsI RAATTY 1 cut(s) 533
AfaI GTAC 4 cut(s) 173, 178, 348, 670
AflIII ACRYGT 1 cut(s) 1003
AgsI TTSAA 9 cut(s) 87, 119, 310, 318, 332, 430, 580, 604, 742
AjnI CCWGG 2 cut(s) 366, 709
AluBI AGCT 5 cut(s) 207, 413, 796, 856, 1012
AluI AGCT 5 cut(s) 207, 413, 796, 856, 1012
Alw26I GTCTC 3 cut(s) 116, 710, 836
AlwI GGATC 5 cut(s) 260, 273, 442, 857, 870
AoxI GGCC 2 cut(s) 457, 881
ApeKI GCWGC 1 cut(s) 650
ApoI RAATTY 1 cut(s) 533
AspS9I GGNCC 4 cut(s) 200, 370, 458, 1055
AsuHPI GGTGA 4 cut(s) 241, 250, 392, 1054
AvaII GGWCC 3 cut(s) 200, 370, 1055
AxyI CCTNAGG 1 cut(s) 147
BaeGI GKGCMC 2 cut(s) 357, 975
BamHI GGATCC 2 cut(s) 265, 862
BbvI GCAGC 1 cut(s) 662
BccI CCATC 3 cut(s) 581, 677, 902
BciT130I CCWGG 2 cut(s) 368, 711
BcoDI GTCTC 3 cut(s) 116, 710, 836
BfaI CTAG 2 cut(s) 204, 462
BfmI CTRYAG 1 cut(s) 849
BisI GCNGC 1 cut(s) 651
BlpI GCTNAGC 1 cut(s) 797
BlsI GCNGC 1 cut(s) 652
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 2 cut(s) 368, 711
Bme18I GGWCC 3 cut(s) 200, 370, 1055
BmgT120I GGNCC 4 cut(s) 200, 370, 458, 1055
BmiI GGNNCC 3 cut(s) 267, 864, 956
BmrFI CCNGG 2 cut(s) 368, 711
Bpu10I CCTNAGC 1 cut(s) 825
Bpu1102I GCTNAGC 1 cut(s) 797
BsaBI GATNNNNATC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 836
BsaJI CCNNGG 2 cut(s) 710, 819
Bse1I ACTGG 3 cut(s) 180, 350, 676
Bse21I CCTNAGG 1 cut(s) 147
Bse8I GATNNNNATC 1 cut(s) 270
BseBI CCWGG 2 cut(s) 368, 711
BseDI CCNNGG 2 cut(s) 710, 819
BseGI GGATG 2 cut(s) 155, 484
BseJI GATNNNNATC 1 cut(s) 270
BseMII CTCAG 2 cut(s) 381, 788
BseNI ACTGG 3 cut(s) 180, 350, 676
BseSI GKGCMC 2 cut(s) 357, 975
BseXI GCAGC 1 cut(s) 662
BseYI CCCAGC 1 cut(s) 474
BshFI GGCC 2 cut(s) 459, 883
BslFI GGGAC 1 cut(s) 1014
BsmAI GTCTC 3 cut(s) 116, 710, 836
BsmFI GGGAC 1 cut(s) 1014
BsmI GAATGC 2 cut(s) 91, 801
BsnI GGCC 2 cut(s) 459, 883
Bso31I GGTCTC 1 cut(s) 836
Bsp1286I GDGCHC 2 cut(s) 357, 975
Bsp1407I TGTACA 1 cut(s) 171
Bsp143I GATC 4 cut(s) 265, 434, 862, 875
Bsp1720I GCTNAGC 1 cut(s) 797
BspACI CCGC 2 cut(s) 357, 675
BspANI GGCC 2 cut(s) 459, 883
BspCNI CTCAG 2 cut(s) 382, 789
BspLI GGNNCC 3 cut(s) 267, 864, 956
BspPI GGATC 5 cut(s) 260, 273, 442, 857, 870
BspTNI GGTCTC 1 cut(s) 836
BsrGI TGTACA 1 cut(s) 171
BsrI ACTGG 3 cut(s) 180, 350, 676
BssECI CCNNGG 2 cut(s) 710, 819
BssMI GATC 4 cut(s) 265, 434, 862, 875
BssT1I CCWWGG 1 cut(s) 819
Bst2UI CCWGG 2 cut(s) 368, 711
Bst4CI ACNGT 2 cut(s) 176, 789
Bst6I CTCTTC 2 cut(s) 114, 486
BstAUI TGTACA 1 cut(s) 171
BstC8I GCNNGC 4 cut(s) 49, 357, 935, 939
BstDEI CTNAG 4 cut(s) 147, 390, 797, 825
BstF5I GGATG 2 cut(s) 155, 484
BstKTI GATC 4 cut(s) 268, 437, 865, 878
BstMAI GTCTC 3 cut(s) 116, 710, 836
BstMBI GATC 4 cut(s) 265, 434, 862, 875
BstNI CCWGG 2 cut(s) 368, 711
BstNSI RCATGY 2 cut(s) 633, 1007
BstSCI CCNGG 2 cut(s) 366, 709
BstSFI CTRYAG 1 cut(s) 849
BstSLI GKGCMC 2 cut(s) 357, 975
BstV1I GCAGC 1 cut(s) 662
BstX2I RGATCY 2 cut(s) 265, 862
BstXI CCANNNNNNTGG 1 cut(s) 431
BstYI RGATCY 2 cut(s) 265, 862
Bsu36I CCTNAGG 1 cut(s) 147
BsuRI GGCC 2 cut(s) 459, 883
BtsCI GGATG 2 cut(s) 155, 484
BtsIMutI CAGTG 2 cut(s) 187, 357
Cac8I GCNNGC 4 cut(s) 49, 357, 935, 939
Cfr13I GGNCC 4 cut(s) 200, 370, 458, 1055
Csp6I GTAC 4 cut(s) 172, 177, 347, 669
CviAII CATG 6 cut(s) 630, 643, 706, 879, 901, 1004
CviQI GTAC 4 cut(s) 172, 177, 347, 669
DdeI CTNAG 4 cut(s) 147, 390, 797, 825
DpnI GATC 4 cut(s) 267, 436, 864, 877
DpnII GATC 4 cut(s) 265, 434, 862, 875
Eam1104I CTCTTC 2 cut(s) 114, 486
EarI CTCTTC 2 cut(s) 114, 486
Eco130I CCWWGG 1 cut(s) 819
Eco31I GGTCTC 1 cut(s) 836
Eco47I GGWCC 3 cut(s) 200, 370, 1055
Eco81I CCTNAGG 1 cut(s) 147
EcoO109I RGGNCCY 4 cut(s) 200, 370, 458, 1055
EcoRII CCWGG 2 cut(s) 366, 709
EcoT14I CCWWGG 1 cut(s) 819
ErhI CCWWGG 1 cut(s) 819
FaeI CATG 6 cut(s) 633, 646, 709, 882, 904, 1007
FaqI GGGAC 1 cut(s) 1014
FatI CATG 6 cut(s) 629, 642, 705, 878, 900, 1003
FauI CCCGC 1 cut(s) 364
Fnu4HI GCNGC 1 cut(s) 651
FokI GGATG 2 cut(s) 142, 491
Fsp4HI GCNGC 1 cut(s) 651
FspBI CTAG 2 cut(s) 204, 462
GluI GCNGC 1 cut(s) 651
GsaI CCCAGC 1 cut(s) 478
HaeIII GGCC 2 cut(s) 459, 883
Hin1II CATG 6 cut(s) 633, 646, 709, 882, 904, 1007
HincII GTYRAC 2 cut(s) 246, 421
HindII GTYRAC 2 cut(s) 246, 421
HindIII AAGCTT 1 cut(s) 1010
HinfI GANTC 3 cut(s) 39, 729, 895
HphI GGTGA 4 cut(s) 241, 250, 392, 1054
Hpy166II GTNNAC 3 cut(s) 246, 421, 917
Hpy188I TCNGA 4 cut(s) 107, 391, 728, 748
Hpy188III TCNNGA 3 cut(s) 275, 680, 860
Hpy8I GTNNAC 3 cut(s) 246, 421, 917
HpyAV CCTTC 3 cut(s) 272, 554, 991
HpyCH4III ACNGT 2 cut(s) 176, 789
HpyCH4V TGCA 3 cut(s) 131, 447, 629
HpyF3I CTNAG 4 cut(s) 147, 390, 797, 825
Hsp92II CATG 6 cut(s) 633, 646, 709, 882, 904, 1007
Kzo9I GATC 4 cut(s) 265, 434, 862, 875
Lsp1109I GCAGC 1 cut(s) 662
MaeI CTAG 2 cut(s) 204, 462
MaeIII GTNAC 3 cut(s) 151, 607, 892
MalI GATC 4 cut(s) 267, 436, 864, 877
MboI GATC 4 cut(s) 265, 434, 862, 875
MboII GAAGA 5 cut(s) 131, 134, 320, 503, 505
MflI RGATCY 2 cut(s) 265, 862
MhlI GDGCHC 2 cut(s) 357, 975
MluCI AATT 4 cut(s) 533, 547, 580, 592
MlyI GAGTC 2 cut(s) 48, 889
MnlI CCTC 8 cut(s) 169, 449, 487, 550, 687, 837, 1024, 1033
MseI TTAA 4 cut(s) 27, 762, 888, 963
MslI CAYNNNNRTG 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 796
MspR9I CCNGG 2 cut(s) 368, 711
Mva1269I GAATGC 2 cut(s) 91, 801
MvaI CCWGG 2 cut(s) 368, 711
NdeII GATC 4 cut(s) 265, 434, 862, 875
NlaIII CATG 6 cut(s) 633, 646, 709, 882, 904, 1007
NlaIV GGNNCC 3 cut(s) 267, 864, 956
NmuCI GTSAC 2 cut(s) 607, 892
NspI RCATGY 2 cut(s) 633, 1007
PciI ACATGT 1 cut(s) 1003
PctI GAATGC 2 cut(s) 91, 801
PfeI GAWTC 1 cut(s) 729
PkrI GCNGC 1 cut(s) 652
PleI GAGTC 2 cut(s) 47, 889
PpsI GAGTC 2 cut(s) 47, 889
PpuMI RGGWCCY 3 cut(s) 200, 370, 1055
PscI ACATGT 1 cut(s) 1003
Psp5II RGGWCCY 3 cut(s) 200, 370, 1055
Psp6I CCWGG 2 cut(s) 366, 709
PspFI CCCAGC 1 cut(s) 474
PspGI CCWGG 2 cut(s) 366, 709
PspN4I GGNNCC 3 cut(s) 267, 864, 956
PspPI GGNCC 4 cut(s) 200, 370, 458, 1055
PspPPI RGGWCCY 3 cut(s) 200, 370, 1055
PsrI GAACNNNNNNTAC 2 cut(s) 284, 316
PsuI RGATCY 2 cut(s) 265, 862
PvuII CAGCTG 1 cut(s) 796
RsaI GTAC 4 cut(s) 173, 178, 348, 670
RsaNI GTAC 4 cut(s) 172, 177, 347, 669
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 4 cut(s) 27, 762, 888, 963
SatI GCNGC 1 cut(s) 651
Sau3AI GATC 4 cut(s) 265, 434, 862, 875
Sau96I GGNCC 4 cut(s) 200, 370, 458, 1055
ScaI AGTACT 1 cut(s) 670
SchI GAGTC 2 cut(s) 48, 889
ScrFI CCNGG 2 cut(s) 368, 711
SduI GDGCHC 2 cut(s) 357, 975
SfcI CTRYAG 1 cut(s) 849
SinI GGWCC 3 cut(s) 200, 370, 1055
SmiMI CAYNNNNRTG 1 cut(s) 429
Sse9I AATT 4 cut(s) 533, 547, 580, 592
SsiI CCGC 2 cut(s) 357, 675
SspI AATATT 1 cut(s) 486
SspMI CTAG 2 cut(s) 204, 462
StyD4I CCNGG 2 cut(s) 366, 709
StyI CCWWGG 1 cut(s) 819
TaaI ACNGT 2 cut(s) 176, 789
TaqI TCGA 1 cut(s) 454
TasI AATT 4 cut(s) 533, 547, 580, 592
TatI WGTACW 2 cut(s) 171, 668
TfiI GAWTC 1 cut(s) 729
Tru1I TTAA 4 cut(s) 27, 762, 888, 963
Tru9I TTAA 4 cut(s) 27, 762, 888, 963
TscAI CASTG 2 cut(s) 187, 357
TseFI GTSAC 2 cut(s) 607, 892
TseI GCWGC 1 cut(s) 650
Tsp45I GTSAC 2 cut(s) 607, 892
TspDTI ATGAA 3 cut(s) 54, 84, 938
TspRI CASTG 2 cut(s) 187, 357
VpaK11BI GGWCC 3 cut(s) 200, 370, 1055
XapI RAATTY 1 cut(s) 533
XceI RCATGY 2 cut(s) 633, 1007
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XspI CTAG 2 cut(s) 204, 462
ZrmI AGTACT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.