Rh5DG234200

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000210
Physical Location & Seq
Forward (+)
26701631 .. 26701972
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG234200.1

Sequence Viewer

Length: 342 bp
ATGCTGATCTTTAAAGTACGTTATAAATTGCCGAGGATTCCAAAGAAATTAGTCATGGTTAAAGGACTTACGAGTAAGAAGAGTACTGAGAAGATTCAAGATCCCACTGGGAGGTCATGGCTCGTTAAACTTCCTCTAGAAAGGTATGAATCCAAAGGGTACAGATCTAGTTATGATCGCTATCACATGGGAAGAGGTTGGAAAGAATGTCGCAAAGCCAACCAGATATATCGCATGGGGACAACCTCATTTTTTGAGTTTGTCAAGAACAGCATAGTGCAACTTCATATCTCCAAGAATTGGCATTCTGTGGTACTTGATGCTCCCAACTTCAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

113

Amino Acids

13.4

Weight (kDa)

10.29

Isoelectric Point (pI)

22.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 12 - 92 5.4e-06 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
AccB7I CCANNNNNTGG 1 cut(s) 300
AclWI GGATC 1 cut(s) 95
AfaI GTAC 4 cut(s) 18, 85, 161, 315
AfiI CCNNNNNNNGG 2 cut(s) 111, 300
AgsI TTSAA 2 cut(s) 98, 334
AlwI GGATC 1 cut(s) 95
BfaI CTAG 2 cut(s) 137, 168
BglII AGATCT 1 cut(s) 164
BmcAI AGTACT 1 cut(s) 85
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 310
BmuI ACTGGG 1 cut(s) 117
BsaBI GATNNNNATC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 300
Bse1I ACTGG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 32
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 111, 300
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 2 cut(s) 111, 300
BsmFI GGGAC 1 cut(s) 253
BsmI GAATGC 1 cut(s) 304
Bsp143I GATC 4 cut(s) 6, 100, 164, 175
BspCNI CTCAG 1 cut(s) 79
BspPI GGATC 1 cut(s) 95
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 4 cut(s) 6, 100, 164, 175
Bst6I CTCTTC 2 cut(s) 74, 187
BstDEI CTNAG 1 cut(s) 87
BstKTI GATC 4 cut(s) 9, 103, 167, 178
BstMBI GATC 4 cut(s) 6, 100, 164, 175
BstX2I RGATCY 2 cut(s) 100, 164
BstYI RGATCY 2 cut(s) 100, 164
BtsIMutI CAGTG 1 cut(s) 105
Csp6I GTAC 4 cut(s) 17, 84, 160, 314
CviAII CATG 4 cut(s) 55, 117, 187, 235
CviJI RGCY 2 cut(s) 121, 218
CviKI_1 RGCY 2 cut(s) 121, 218
CviQI GTAC 4 cut(s) 17, 84, 160, 314
DdeI CTNAG 1 cut(s) 87
DpnI GATC 4 cut(s) 8, 102, 166, 177
DpnII GATC 4 cut(s) 6, 100, 164, 175
DraI TTTAAA 1 cut(s) 13
Eam1104I CTCTTC 2 cut(s) 74, 187
EarI CTCTTC 2 cut(s) 74, 187
FaeI CATG 4 cut(s) 58, 120, 190, 238
FaqI GGGAC 1 cut(s) 253
FatI CATG 4 cut(s) 54, 116, 186, 234
FspBI CTAG 2 cut(s) 137, 168
Hin1II CATG 4 cut(s) 58, 120, 190, 238
HinfI GANTC 3 cut(s) 37, 94, 149
Hpy188III TCNNGA 3 cut(s) 98, 137, 265
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 280
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 4 cut(s) 58, 120, 190, 238
Kzo9I GATC 4 cut(s) 6, 100, 164, 175
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 2 cut(s) 93, 236
LweI GCATC 1 cut(s) 310
MaeI CTAG 2 cut(s) 137, 168
MaeII ACGT 1 cut(s) 19
MalI GATC 4 cut(s) 8, 102, 166, 177
MboI GATC 4 cut(s) 6, 100, 164, 175
MboII GAAGA 3 cut(s) 91, 103, 204
MflI RGATCY 2 cut(s) 100, 164
MluCI AATT 3 cut(s) 26, 47, 298
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 5 cut(s) 27, 105, 144, 188, 256
MseI TTAA 3 cut(s) 12, 60, 126
Mva1269I GAATGC 1 cut(s) 304
NdeII GATC 4 cut(s) 6, 100, 164, 175
NlaIII CATG 4 cut(s) 58, 120, 190, 238
NmeAIII GCCGAG 1 cut(s) 57
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 3 cut(s) 37, 94, 149
PflMI CCANNNNNTGG 1 cut(s) 300
PsiI TTATAA 1 cut(s) 24
PsuI RGATCY 2 cut(s) 100, 164
RsaI GTAC 4 cut(s) 18, 85, 161, 315
RsaNI GTAC 4 cut(s) 17, 84, 160, 314
SaqAI TTAA 3 cut(s) 12, 60, 126
Sau3AI GATC 4 cut(s) 6, 100, 164, 175
ScaI AGTACT 1 cut(s) 85
SetI ASST 5 cut(s) 22, 116, 146, 199, 248
SfaNI GCATC 1 cut(s) 310
Sse9I AATT 3 cut(s) 26, 47, 298
SspMI CTAG 2 cut(s) 137, 168
TaiI ACGT 1 cut(s) 22
TasI AATT 3 cut(s) 26, 47, 298
TatI WGTACW 1 cut(s) 83
TfiI GAWTC 3 cut(s) 37, 94, 149
Tru1I TTAA 3 cut(s) 12, 60, 126
Tru9I TTAA 3 cut(s) 12, 60, 126
TscAI CASTG 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 162, 275
TspRI CASTG 1 cut(s) 112
Van91I CCANNNNNTGG 1 cut(s) 300
XbaI TCTAGA 1 cut(s) 136
XspI CTAG 2 cut(s) 137, 168
ZrmI AGTACT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.