FvH4_7g23440

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000210
Physical Location & Seq
Reverse (-)
18278985 .. 18281580
2596 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g23440.t2

Sequence Viewer

Length: 726 bp
ATGGAACGTTCAGTATCAGCGACAGCCTTTTTCACGGTCCTTGTTGGTGATTTCTCTGAGAAATTGAAAATGCCAAGAGCTTTTGTCACCCACTTCAATGGACCAGCACTTTGCAAACTTCAAGGCCCTACTGGAAAATCCTGGGATGTGAAATTGGAAGAGAAAAATAATGAAATTTTCTTCCATAAAGGCTGGAAGAAGTTTCTGAAGGATAATTTTTTGGATGGAGGAGACTTTCTGGTTTTCAATTATGATGGTGATTCGTGTTTCAGTGTGACAATCTATGATGAAAGTTCATGTGAAATGGACATGGAAGTAGCCAAGACAAAGAGAAGTGGCGGTGGTCGAAGAAGGGATCACATTTGGCCTGGGGAGTCAAGAATCATTGAGTTCAACTCAAAGCATTTTTGCTTCAAGAGGACTTTTACGAAGCACAAATTGTATCAGCTGACCATTCCTATAAAGATAGTCAGGGCAAAGCTTCAGATGAGCAAGCAGATTTTGGAGCTTCGGGATCCAAAAAACATGTCATGGCCTGTTACAGCGACTCCCATCCCAGATGGTCGTCTACTTATGACCACAGGCTGGTGTGATTGTTGCAAGGCGAACAAGATTGAGGAAGGGCACACCATTGTCTTTGAGTTTGTGAAGGGACATGTGAAGCTCCACATCTTTAGATCTGAGGGGTGTAATGTGATACTCATAGGTCCAAATGTCATAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

242

Amino Acids

27.65

Weight (kDa)

8.95

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 11 - 96 2.4e-17 B3 DNA binding domain
B3 PF02362 146 - 227 6.2e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 585
AccI GTMKAC 1 cut(s) 568
AciI CCGC 1 cut(s) 339
AclI AACGTT 1 cut(s) 7
AclWI GGATC 3 cut(s) 363, 509, 522
AcsI RAATTY 1 cut(s) 174
AcuI CTGAAG 2 cut(s) 227, 467
AfiI CCNNNNNNNGG 1 cut(s) 585
AflIII ACRYGT 2 cut(s) 525, 655
AgsI TTSAA 6 cut(s) 67, 97, 122, 247, 394, 415
AjnI CCWGG 2 cut(s) 140, 367
AluBI AGCT 5 cut(s) 80, 448, 481, 508, 664
AluI AGCT 5 cut(s) 80, 448, 481, 508, 664
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 3 cut(s) 363, 509, 522
AoxI GGCC 3 cut(s) 124, 365, 533
ApoI RAATTY 1 cut(s) 174
ArsI GACNNNNNNTTYG 4 cut(s) 93, 125, 512, 544
AspS9I GGNCC 4 cut(s) 37, 101, 125, 707
AsuHPI GGTGA 3 cut(s) 59, 79, 269
AvaII GGWCC 3 cut(s) 37, 101, 707
BaeGI GKGCMC 1 cut(s) 627
BamHI GGATCC 1 cut(s) 514
BccI CCATC 4 cut(s) 218, 248, 554, 560
BciT130I CCWGG 2 cut(s) 142, 369
BcoDI GTCTC 1 cut(s) 225
BglII AGATCT 1 cut(s) 677
Bme1390I CCNGG 2 cut(s) 142, 369
Bme18I GGWCC 3 cut(s) 37, 101, 707
BmgT120I GGNCC 4 cut(s) 37, 101, 125, 707
BmiI GGNNCC 1 cut(s) 516
BmrFI CCNGG 2 cut(s) 142, 369
BplI GAGNNNNNCTC 2 cut(s) 380, 412
BsaJI CCNNGG 2 cut(s) 141, 368
BsaXI ACNNNNNCTCC 2 cut(s) 532, 562
Bsc4I CCNNNNNNNGG 1 cut(s) 585
Bse1I ACTGG 1 cut(s) 136
BseBI CCWGG 2 cut(s) 142, 369
BseDI CCNNGG 2 cut(s) 141, 368
BseGI GGATG 3 cut(s) 151, 229, 552
BseLI CCNNNNNNNGG 1 cut(s) 585
BseMII CTCAG 2 cut(s) 48, 672
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 627
BshFI GGCC 3 cut(s) 126, 367, 535
BslFI GGGAC 1 cut(s) 666
BslI CCNNNNNNNGG 1 cut(s) 585
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 666
BsnI GGCC 3 cut(s) 126, 367, 535
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 3 cut(s) 355, 514, 677
BspACI CCGC 1 cut(s) 339
BspANI GGCC 3 cut(s) 126, 367, 535
BspCNI CTCAG 2 cut(s) 49, 673
BspLI GGNNCC 1 cut(s) 516
BspPI GGATC 3 cut(s) 363, 509, 522
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 141, 368
BssMI GATC 3 cut(s) 355, 514, 677
Bst2UI CCWGG 2 cut(s) 142, 369
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 494
BstDEI CTNAG 2 cut(s) 57, 681
BstF5I GGATG 3 cut(s) 151, 229, 552
BstKTI GATC 3 cut(s) 358, 517, 680
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 3 cut(s) 355, 514, 677
BstNI CCWGG 2 cut(s) 142, 369
BstNSI RCATGY 2 cut(s) 529, 659
BstSCI CCNGG 2 cut(s) 140, 367
BstSLI GKGCMC 1 cut(s) 627
BstX2I RGATCY 2 cut(s) 514, 677
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 2 cut(s) 514, 677
BsuRI GGCC 3 cut(s) 126, 367, 535
BtsCI GGATG 3 cut(s) 151, 229, 552
BtsIMutI CAGTG 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 494
Cfr13I GGNCC 4 cut(s) 37, 101, 125, 707
CviAII CATG 5 cut(s) 297, 310, 526, 531, 656
DdeI CTNAG 2 cut(s) 57, 681
DpnI GATC 3 cut(s) 357, 516, 679
DpnII GATC 3 cut(s) 355, 514, 677
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco47I GGWCC 3 cut(s) 37, 101, 707
Eco57I CTGAAG 2 cut(s) 227, 467
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 140, 367
FaeI CATG 5 cut(s) 300, 313, 529, 534, 659
FaqI GGGAC 1 cut(s) 666
FatI CATG 5 cut(s) 296, 309, 525, 530, 655
FblI GTMKAC 1 cut(s) 568
FokI GGATG 3 cut(s) 158, 236, 539
HaeIII GGCC 3 cut(s) 126, 367, 535
Hin1II CATG 5 cut(s) 300, 313, 529, 534, 659
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 4 cut(s) 260, 374, 381, 547
HphI GGTGA 3 cut(s) 59, 79, 269
Hpy166II GTNNAC 1 cut(s) 569
Hpy188I TCNGA 4 cut(s) 58, 207, 486, 682
Hpy188III TCNNGA 3 cut(s) 378, 415, 512
Hpy8I GTNNAC 1 cut(s) 569
HpyAV CCTTC 4 cut(s) 202, 345, 614, 643
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 2 cut(s) 114, 600
HpyF3I CTNAG 2 cut(s) 57, 681
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 5 cut(s) 300, 313, 529, 534, 659
Kzo9I GATC 3 cut(s) 355, 514, 677
LmnI GCTCC 2 cut(s) 505, 669
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 3 cut(s) 85, 274, 538
MalI GATC 3 cut(s) 357, 516, 679
MboI GATC 3 cut(s) 355, 514, 677
MboII GAAGA 4 cut(s) 170, 172, 208, 360
MflI RGATCY 2 cut(s) 514, 677
MhlI GDGCHC 1 cut(s) 627
MluCI AATT 6 cut(s) 62, 152, 174, 214, 247, 437
MlyI GAGTC 2 cut(s) 383, 541
MnlI CCTC 4 cut(s) 221, 411, 610, 676
MslI CAYNNNNRTG 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 448
MspR9I CCNGG 2 cut(s) 142, 369
MvaI CCWGG 2 cut(s) 142, 369
NdeII GATC 3 cut(s) 355, 514, 677
NlaIII CATG 5 cut(s) 300, 313, 529, 534, 659
NlaIV GGNNCC 1 cut(s) 516
NmuCI GTSAC 2 cut(s) 85, 274
NspI RCATGY 2 cut(s) 529, 659
PciI ACATGT 2 cut(s) 525, 655
PfeI GAWTC 2 cut(s) 260, 381
PflMI CCANNNNNTGG 1 cut(s) 585
PleI GAGTC 2 cut(s) 382, 541
PpsI GAGTC 2 cut(s) 382, 541
PscI ACATGT 2 cut(s) 525, 655
Psp1406I AACGTT 1 cut(s) 7
Psp6I CCWGG 2 cut(s) 140, 367
PspGI CCWGG 2 cut(s) 140, 367
PspN4I GGNNCC 1 cut(s) 516
PspPI GGNCC 4 cut(s) 37, 101, 125, 707
PsuI RGATCY 2 cut(s) 514, 677
PvuII CAGCTG 1 cut(s) 448
RseI CAYNNNNRTG 1 cut(s) 96
Sau3AI GATC 3 cut(s) 355, 514, 677
Sau96I GGNCC 4 cut(s) 37, 101, 125, 707
SchI GAGTC 2 cut(s) 383, 541
ScrFI CCNGG 2 cut(s) 142, 369
SduI GDGCHC 1 cut(s) 627
SetI ASST 7 cut(s) 10, 82, 450, 483, 510, 666, 709
SinI GGWCC 3 cut(s) 37, 101, 707
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 6 cut(s) 62, 152, 174, 214, 247, 437
SsiI CCGC 1 cut(s) 339
StyD4I CCNGG 2 cut(s) 140, 367
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 346
TasI AATT 6 cut(s) 62, 152, 174, 214, 247, 437
TfiI GAWTC 2 cut(s) 260, 381
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 2 cut(s) 85, 274
Tsp45I GTSAC 2 cut(s) 85, 274
TspDTI ATGAA 3 cut(s) 186, 285, 303
TspRI CASTG 1 cut(s) 277
Van91I CCANNNNNTGG 1 cut(s) 585
VpaK11BI GGWCC 3 cut(s) 37, 101, 707
XapI RAATTY 1 cut(s) 174
XceI RCATGY 2 cut(s) 529, 659
XmiI GTMKAC 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.