RchiOBHm_Chr1g0318881

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000210
Physical Location & Seq
Forward (+)
6502475 .. 6504854
2380 bp
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UTR
Exon/CDS
Intron
PRQ54913

Sequence Viewer

Length: 174 bp
ATGAAAGATGGTCGTTTACTTATGAACAAAGGCTGGCGTGCTTGTAGCAAGTGGAACCGGATTAAGAAAGGGCACACCATTGTTTTTGAGTTTGTGAAGGGACATGTGAAGCTTCACATCATTAGAGCTGAGGGGTGTGATGTGATACTCACAGGTTCTAATGTAGTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

57

Amino Acids

6.51

Weight (kDa)

9.92

Isoelectric Point (pI)

25.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 103
AluBI AGCT 2 cut(s) 112, 128
AluI AGCT 2 cut(s) 112, 128
BaeGI GKGCMC 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 129
BccI CCATC 1 cut(s) 2
BmiI GGNNCC 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 129
BsaWI WCCGGW 1 cut(s) 57
BseMII CTCAG 1 cut(s) 120
BseSI GKGCMC 1 cut(s) 75
BsiSI CCGG 1 cut(s) 58
BslFI GGGAC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 35, 39
BstDEI CTNAG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 35, 39
CviAII CATG 1 cut(s) 104
CviJI RGCY 3 cut(s) 33, 112, 128
CviKI_1 RGCY 3 cut(s) 33, 112, 128
DdeI CTNAG 1 cut(s) 129
FaeI CATG 1 cut(s) 107
FaiI YATR 2 cut(s) 23, 105
FaqI GGGAC 1 cut(s) 114
FatI CATG 1 cut(s) 103
HapII CCGG 1 cut(s) 58
Hin1II CATG 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 110
HpaII CCGG 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 91
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 1 cut(s) 107
LpnPI CCDG 3 cut(s) 19, 71, 138
MhlI GDGCHC 1 cut(s) 75
MnlI CCTC 1 cut(s) 124
MseI TTAA 1 cut(s) 63
MspI CCGG 1 cut(s) 58
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 56
NspI RCATGY 1 cut(s) 107
PciI ACATGT 1 cut(s) 103
PscI ACATGT 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 63
SduI GDGCHC 1 cut(s) 75
SetI ASST 3 cut(s) 114, 130, 157
SgeI CNNG 7 cut(s) 46, 50, 54, 61, 70, 116, 165
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 17, 38
XceI RCATGY 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.