Rroxscaffold_1G00046900

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000210
Physical Location & Seq
Reverse (-)
66348556 .. 66350129
1574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00046900.1

Sequence Viewer

Length: 327 bp
ATGGCCTGTTATTCAATAATGAGGATTCCAAAGAAATTAGTCATGGTTAAAGGACTTACGAGTAAGAAGACTGAGAAGATTCAAGATCCCACTGGGAGATCATGGCTCGTTAAACTTCCTCTAGAATGGTATGAATCCAAAGGGTACAGATCTAGTTATGATCGCTGTCACATGGGAAGAGGTTGGAAAGATTGTCGCAAAGCCAACCAGATATATCGCATGGGGACAACCTCATTTTTTGAGTTTGTAAAGAACAGCATAATGCAACTTCATATCTTCAAGAATTGGCATTCTGTGGTACTTGATGCTCCCAACTTCAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

108

Amino Acids

12.77

Weight (kDa)

9.93

Isoelectric Point (pI)

26.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 6 - 94 9.2e-06 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 80
AfaI GTAC 2 cut(s) 146, 300
AgsI TTSAA 4 cut(s) 15, 83, 280, 319
AlwI GGATC 1 cut(s) 80
AoxI GGCC 1 cut(s) 3
BbsI GAAGAC 1 cut(s) 74
BfaI CTAG 2 cut(s) 122, 153
BglII AGATCT 1 cut(s) 149
BmrI ACTGGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 295
BmuI ACTGGG 1 cut(s) 102
BpiI GAAGAC 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 97
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 238
BsmI GAATGC 1 cut(s) 289
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 4 cut(s) 85, 98, 149, 160
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 64
BspPI GGATC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 97
BssMI GATC 4 cut(s) 85, 98, 149, 160
Bst6I CTCTTC 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 72
BstKTI GATC 4 cut(s) 88, 101, 152, 163
BstMBI GATC 4 cut(s) 85, 98, 149, 160
BstV2I GAAGAC 1 cut(s) 74
BstX2I RGATCY 2 cut(s) 85, 149
BstYI RGATCY 2 cut(s) 85, 149
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 90
Csp6I GTAC 2 cut(s) 145, 299
CviAII CATG 4 cut(s) 43, 102, 172, 220
CviJI RGCY 3 cut(s) 5, 106, 203
CviKI_1 RGCY 3 cut(s) 5, 106, 203
CviQI GTAC 2 cut(s) 145, 299
DdeI CTNAG 1 cut(s) 72
DpnI GATC 4 cut(s) 87, 100, 151, 162
DpnII GATC 4 cut(s) 85, 98, 149, 160
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
FaeI CATG 4 cut(s) 46, 105, 175, 223
FaqI GGGAC 1 cut(s) 238
FatI CATG 4 cut(s) 42, 101, 171, 219
FspBI CTAG 2 cut(s) 122, 153
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 4 cut(s) 46, 105, 175, 223
HinfI GANTC 3 cut(s) 25, 79, 134
Hpy188III TCNNGA 3 cut(s) 83, 122, 280
HpyCH4V TGCA 1 cut(s) 265
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 4 cut(s) 46, 105, 175, 223
Kzo9I GATC 4 cut(s) 85, 98, 149, 160
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 3 cut(s) 19, 78, 221
LweI GCATC 1 cut(s) 295
MaeI CTAG 2 cut(s) 122, 153
MaeIII GTNAC 1 cut(s) 167
MalI GATC 4 cut(s) 87, 100, 151, 162
MboI GATC 4 cut(s) 85, 98, 149, 160
MboII GAAGA 4 cut(s) 79, 88, 189, 268
MflI RGATCY 2 cut(s) 85, 149
MluCI AATT 2 cut(s) 35, 283
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 4 cut(s) 15, 129, 173, 241
MseI TTAA 2 cut(s) 48, 111
Mva1269I GAATGC 1 cut(s) 289
NdeII GATC 4 cut(s) 85, 98, 149, 160
NlaIII CATG 4 cut(s) 46, 105, 175, 223
NmuCI GTSAC 1 cut(s) 167
PctI GAATGC 1 cut(s) 289
PfeI GAWTC 3 cut(s) 25, 79, 134
PsuI RGATCY 2 cut(s) 85, 149
RsaI GTAC 2 cut(s) 146, 300
RsaNI GTAC 2 cut(s) 145, 299
SaqAI TTAA 2 cut(s) 48, 111
Sau3AI GATC 4 cut(s) 85, 98, 149, 160
SetI ASST 2 cut(s) 184, 233
SfaNI GCATC 1 cut(s) 295
Sse9I AATT 2 cut(s) 35, 283
SspMI CTAG 2 cut(s) 122, 153
TasI AATT 2 cut(s) 35, 283
TfiI GAWTC 3 cut(s) 25, 79, 134
Tru1I TTAA 2 cut(s) 48, 111
Tru9I TTAA 2 cut(s) 48, 111
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 2 cut(s) 147, 260
TspRI CASTG 1 cut(s) 97
XbaI TCTAGA 1 cut(s) 121
XspI CTAG 2 cut(s) 122, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.