Prupe.4G178100_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000210
Physical Location & Seq
Forward (+)
10580864 .. 10583143
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G178100.2

Sequence Viewer

Length: 891 bp
ATGGCTGGGCCTAGGAAGCGTTCACCAAAGAAACCATCATTTTTCAAGATCCTAATTGGTGACTTCTATCAGCGTCTGCGTATACCACCTAAGTTTATTGAGAACTTCAATGGGCAATCACTTCGCAAATGTGCTCTTAGAGGCCCTAGTAGACAATGGTGGGATGTGAAATTGGAAGAGAGAGAGAATAGCTTGTTCTTCCGTGATGGTTGGCAGGGTTTTGTGAAAGATCATGTTTTAGAAGTTGGGGATCTTTTGGTTTTTAGTTACAATGGCAAATCAAAGTTTAAGGTCAAAATCTATGATAGAAGTGCATGCGAGAAGAATGTAGAAGTAGCGGAGAGAAGAAGTGGTAGTCCAGTTTCTTTGGTGAACAAAGGAAATCAAGCTCAAGTGAAGAATGAAATTGTTGAGCTTGACACTGAAGACTGCGAAAACAAAACGATCGATTCCGACAGAAGAAGTTGCAAATATCCCATTTCTGAAAAGAGGCCTGTGAGTTTTTGTGTACAAGAAACATCAACTGGATCCATCTTGTTCAAATCGGAGAATCCATGTTTCCTAGTTTGTTCAAGGAAGCAGCATTTGCTATATCGTGTGACGATTCCGAATAAACTAGCCGTAGCTGAAGGCCTTCGGGGGAGAGATGCTGTCATTCTTCAAGATCCAACTGGGAGATCATGGCTTGTTGAACTTAGAGTGGAATGCGTTAATCGTTTGGACATGGCAATAGGTTGGACAGAATGTCGTAAAGCGAACCAAATTTCACCTGGGGACTCCATCATTTTTGAGCTTGTCGAGCAAGGTGTAATGCAATTTCATATTTTCAGAGGAGCAGTGAGAGGCAATAGGTTATCTGTGATAACTGCTGCCCCTAATGTTAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

297

Amino Acids

33.83

Weight (kDa)

9.46

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 82, 151
AciI CCGC 1 cut(s) 338
AclWI GGATC 5 cut(s) 43, 258, 522, 535, 659
AcsI RAATTY 1 cut(s) 762
AcuI CTGAAG 2 cut(s) 444, 648
AfaI GTAC 1 cut(s) 510
AgsI TTSAA 6 cut(s) 46, 109, 541, 573, 662, 692
AhdI GACNNNNNGTC 1 cut(s) 744
AjnI CCWGG 1 cut(s) 769
AluBI AGCT 5 cut(s) 192, 389, 415, 626, 793
AluI AGCT 5 cut(s) 192, 389, 415, 626, 793
Alw21I GWGCWC 1 cut(s) 136
AlwI GGATC 5 cut(s) 43, 258, 522, 535, 659
AlwNI CAGNNNCTG 1 cut(s) 76
AoxI GGCC 4 cut(s) 8, 142, 491, 631
ApeKI GCWGC 2 cut(s) 580, 869
ApoI RAATTY 1 cut(s) 762
Asp700I GAANNNNTTC 1 cut(s) 633
AspA2I CCTAGG 1 cut(s) 11
AspS9I GGNCC 2 cut(s) 8, 143
AsuHPI GGTGA 4 cut(s) 15, 71, 382, 759
AvrII CCTAGG 1 cut(s) 11
BamHI GGATCC 1 cut(s) 527
BbsI GAAGAC 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 592, 856
BccI CCATC 4 cut(s) 43, 200, 539, 788
BceAI ACGGC 1 cut(s) 605
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 1 cut(s) 771
BfaI CTAG 4 cut(s) 12, 147, 563, 617
BisI GCNGC 2 cut(s) 581, 870
BlnI CCTAGG 1 cut(s) 11
BlsI GCNGC 2 cut(s) 582, 871
Bme1390I CCNGG 1 cut(s) 771
BmeRI GACNNNNNGTC 1 cut(s) 744
BmgT120I GGNCC 2 cut(s) 8, 143
BmiI GGNNCC 1 cut(s) 529
BmrFI CCNGG 1 cut(s) 771
BmrI ACTGGG 1 cut(s) 681
BmsI GCATC 1 cut(s) 637
BmuI ACTGGG 1 cut(s) 681
BpiI GAAGAC 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 375
Bsa29I ATCGAT 1 cut(s) 447
BsaJI CCNNGG 2 cut(s) 11, 770
Bse1I ACTGG 3 cut(s) 359, 529, 676
BseBI CCWGG 1 cut(s) 771
BseCI ATCGAT 1 cut(s) 447
BseDI CCNNGG 2 cut(s) 11, 770
BseGI GGATG 1 cut(s) 169
BseNI ACTGG 3 cut(s) 359, 529, 676
BseRI GAGGAG 1 cut(s) 846
BseXI GCAGC 2 cut(s) 592, 856
BseYI CCCAGC 1 cut(s) 5
Bsh1285I CGRYCG 1 cut(s) 447
BshFI GGCC 4 cut(s) 10, 144, 493, 633
BshVI ATCGAT 1 cut(s) 447
BsiEI CGRYCG 1 cut(s) 447
BsiHKAI GWGCWC 1 cut(s) 136
BslFI GGGAC 1 cut(s) 788
BsmFI GGGAC 1 cut(s) 788
BsmI GAATGC 1 cut(s) 710
BsnI GGCC 4 cut(s) 10, 144, 493, 633
Bsp1286I GDGCHC 1 cut(s) 136
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 7 cut(s) 48, 229, 250, 444, 527, 664, 677
BspACI CCGC 1 cut(s) 338
BspANI GGCC 4 cut(s) 10, 144, 493, 633
BspDI ATCGAT 1 cut(s) 447
BspLI GGNNCC 1 cut(s) 529
BspPI GGATC 5 cut(s) 43, 258, 522, 535, 659
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 3 cut(s) 359, 529, 676
BssECI CCNNGG 2 cut(s) 11, 770
BssMI GATC 7 cut(s) 48, 229, 250, 444, 527, 664, 677
BssNAI GTATAC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 11
Bst1107I GTATAC 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 771
Bst6I CTCTTC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 586
BstAUI TGTACA 1 cut(s) 508
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 3 cut(s) 90, 137, 695
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 7 cut(s) 51, 232, 253, 447, 530, 667, 680
BstMBI GATC 7 cut(s) 48, 229, 250, 444, 527, 664, 677
BstMCI CGRYCG 1 cut(s) 447
BstMWI GCNNNNNNNGC 3 cut(s) 16, 586, 799
BstNI CCWGG 1 cut(s) 771
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 769
BstV1I GCAGC 2 cut(s) 592, 856
BstV2I GAAGAC 1 cut(s) 432
BstX2I RGATCY 4 cut(s) 48, 250, 527, 664
BstYI RGATCY 4 cut(s) 48, 250, 527, 664
BstZ17I GTATAC 1 cut(s) 83
Bsu15I ATCGAT 1 cut(s) 447
BsuRI GGCC 4 cut(s) 10, 144, 493, 633
BsuTUI ATCGAT 1 cut(s) 447
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 843
BtsIMutI CAGTG 2 cut(s) 420, 843
Cac8I GCNNGC 1 cut(s) 316
CaiI CAGNNNCTG 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 8, 143
ClaI ATCGAT 1 cut(s) 447
CseI GACGC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 509
CviAII CATG 5 cut(s) 233, 315, 555, 681, 724
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 3 cut(s) 90, 137, 695
DpnI GATC 7 cut(s) 50, 231, 252, 446, 529, 666, 679
DpnII GATC 7 cut(s) 48, 229, 250, 444, 527, 664, 677
DriI GACNNNNNGTC 1 cut(s) 744
Eam1104I CTCTTC 1 cut(s) 171
Eam1105I GACNNNNNGTC 1 cut(s) 744
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 11
Eco147I AGGCCT 2 cut(s) 493, 633
Eco57I CTGAAG 2 cut(s) 444, 648
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 769
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 5 cut(s) 236, 318, 558, 684, 727
FaiI YATR 9 cut(s) 83, 234, 303, 316, 556, 592, 682, 725, 822
FaqI GGGAC 1 cut(s) 788
FatI CATG 5 cut(s) 232, 314, 554, 680, 723
FblI GTMKAC 2 cut(s) 82, 151
Fnu4HI GCNGC 2 cut(s) 581, 870
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 2 cut(s) 581, 870
FspBI CTAG 4 cut(s) 12, 147, 563, 617
GluI GCNGC 2 cut(s) 581, 870
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 4 cut(s) 10, 144, 493, 633
HgaI GACGC 1 cut(s) 62
Hin1II CATG 5 cut(s) 236, 318, 558, 684, 727
HinfI GANTC 4 cut(s) 449, 550, 604, 776
HphI GGTGA 4 cut(s) 15, 71, 382, 759
Hpy166II GTNNAC 5 cut(s) 23, 83, 152, 373, 509
Hpy188I TCNGA 5 cut(s) 454, 484, 547, 609, 830
Hpy188III TCNNGA 2 cut(s) 46, 662
Hpy8I GTNNAC 5 cut(s) 23, 83, 152, 373, 509
HpyAV CCTTC 2 cut(s) 623, 644
HpyCH4V TGCA 3 cut(s) 314, 468, 814
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 586, 799
HpyF3I CTNAG 3 cut(s) 90, 137, 695
Hsp92II CATG 5 cut(s) 236, 318, 558, 684, 727
Kzo9I GATC 7 cut(s) 48, 229, 250, 444, 527, 664, 677
LmnI GCTCC 1 cut(s) 833
LpnPI CCDG 7 cut(s) 200, 372, 507, 510, 657, 756, 783
Lsp1109I GCAGC 2 cut(s) 592, 856
LweI GCATC 1 cut(s) 637
MaeI CTAG 4 cut(s) 12, 147, 563, 617
MaeIII GTNAC 3 cut(s) 59, 266, 598
MalI GATC 7 cut(s) 50, 231, 252, 446, 529, 666, 679
MboI GATC 7 cut(s) 48, 229, 250, 444, 527, 664, 677
MboII GAAGA 8 cut(s) 188, 190, 334, 357, 409, 437, 471, 650
MflI RGATCY 4 cut(s) 48, 250, 527, 664
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 6 cut(s) 54, 170, 405, 762, 815, 886
MlyI GAGTC 1 cut(s) 770
MmeI TCCRAC 3 cut(s) 477, 692, 716
MnlI CCTC 4 cut(s) 134, 483, 824, 836
MroXI GAANNNNTTC 1 cut(s) 633
MseI TTAA 4 cut(s) 288, 711, 882, 889
MspR9I CCNGG 1 cut(s) 771
Mva1269I GAATGC 1 cut(s) 710
MvaI CCWGG 1 cut(s) 771
MwoI GCNNNNNNNGC 3 cut(s) 16, 586, 799
NdeII GATC 7 cut(s) 48, 229, 250, 444, 527, 664, 677
NlaIII CATG 5 cut(s) 236, 318, 558, 684, 727
NlaIV GGNNCC 1 cut(s) 529
NmuCI GTSAC 2 cut(s) 59, 598
NspI RCATGY 1 cut(s) 318
PaeI GCATGC 1 cut(s) 318
PceI AGGCCT 2 cut(s) 493, 633
PctI GAATGC 1 cut(s) 710
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 3 cut(s) 449, 550, 604
PkrI GCNGC 2 cut(s) 582, 871
Ple19I CGATCG 1 cut(s) 447
PleI GAGTC 1 cut(s) 770
PpsI GAGTC 1 cut(s) 770
Psp6I CCWGG 1 cut(s) 769
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 769
PspN4I GGNNCC 1 cut(s) 529
PspPI GGNCC 2 cut(s) 8, 143
PstNI CAGNNNCTG 1 cut(s) 76
PsuI RGATCY 4 cut(s) 48, 250, 527, 664
PvuI CGATCG 1 cut(s) 447
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
SaqAI TTAA 4 cut(s) 288, 711, 882, 889
SatI GCNGC 2 cut(s) 581, 870
Sau3AI GATC 7 cut(s) 48, 229, 250, 444, 527, 664, 677
Sau96I GGNCC 2 cut(s) 8, 143
SchI GAGTC 1 cut(s) 770
ScrFI CCNGG 1 cut(s) 771
SduI GDGCHC 1 cut(s) 136
SfaNI GCATC 1 cut(s) 637
SmlI CTYRAG 1 cut(s) 390
SmoI CTYRAG 1 cut(s) 390
SphI GCATGC 1 cut(s) 318
Sse9I AATT 6 cut(s) 54, 170, 405, 762, 815, 886
SseBI AGGCCT 2 cut(s) 493, 633
SsiI CCGC 1 cut(s) 338
SspMI CTAG 4 cut(s) 12, 147, 563, 617
StuI AGGCCT 2 cut(s) 493, 633
StyD4I CCNGG 1 cut(s) 769
StyI CCWWGG 1 cut(s) 11
TaqI TCGA 2 cut(s) 447, 798
TasI AATT 6 cut(s) 54, 170, 405, 762, 815, 886
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 3 cut(s) 449, 550, 604
Tru1I TTAA 4 cut(s) 288, 711, 882, 889
Tru9I TTAA 4 cut(s) 288, 711, 882, 889
TscAI CASTG 2 cut(s) 427, 843
TseFI GTSAC 2 cut(s) 59, 598
TseI GCWGC 2 cut(s) 580, 869
Tsp45I GTSAC 2 cut(s) 59, 598
TspDTI ATGAA 2 cut(s) 417, 809
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 2 cut(s) 427, 843
XapI RAATTY 1 cut(s) 762
XceI RCATGY 1 cut(s) 318
XcmI CCANNNNNNNNNTGG 1 cut(s) 767
XmaJI CCTAGG 1 cut(s) 11
XmiI GTMKAC 2 cut(s) 82, 151
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 4 cut(s) 12, 147, 563, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.