Prupe.4G178000_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000210
Physical Location & Seq
Forward (+)
10578634 .. 10580194
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G178000.1

Sequence Viewer

Length: 729 bp
ATGCGTATACCGCCTAAGTTTGTCAAGAACTTCAATGTACGGCCACTTCACAAATGTGCTCTTAGTGGCCCTACTGGAATTCGGTGGGCTGTGGAATTGGAAGAGAGAGAGAATGGCTTGTTCTTCCAAGATGGTTGGCAGGGGTTTGTGAAGGATCATCATTTAGAAGATGGGGATTTTTTGGTTTTCAAATATGATGGTGAATCAAAGTTTAAAGTCACAATCTATGATAGAACTGCTTGTGAGAAGAATGTAAAGGTAGCTGAGAGGAGTGGCTGTCCTGTTTCCTTGGCTAACAAAGGGAAAGCTCAAGTTAAAGAAGAAATTGTTGACCGTGAAACTAGAAACTACAACAAAAACTGTCAAAACAAAGCAATTGTTTCTGGCAGAAGAAGTGGCAATTATGTTATACCTGGGAAGAGACCTGCAAATGATCATGTAGGAGCAACATCAACTGAACCCGTCTTGTTTAAACCGAAGTATTCATGTTTCATAATAACTTTCACGAGGAAACTTCGATATGGCGTTTCAATTCCCAAGGAAGTAGCCGTAACTGAAGATCTTCTTAGCAAGAAGAGTATGATGATTCAGGATCCAACTGGGAGATCATGGCCTGTTAAACTTAGAGTCCGGGGAAAAGTATCTTCTTGTCGTGTGAACATGTCTACAGGTTTGGTAGACTGTTGTAACGGGAACCAGATTATACCCAGGGACACCCGCCATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

243

Amino Acids

27.46

Weight (kDa)

9.62

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 433
AccI GTMKAC 3 cut(s) 7, 665, 678
AciI CCGC 2 cut(s) 11, 718
AclWI GGATC 3 cut(s) 162, 587, 600
AcoI YGGCCR 1 cut(s) 41
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 576
AfaI GTAC 1 cut(s) 39
AflIII ACRYGT 1 cut(s) 660
AgsI TTSAA 3 cut(s) 34, 190, 531
AjnI CCWGG 2 cut(s) 412, 707
AleI CACNNNNGTG 1 cut(s) 54
AluBI AGCT 2 cut(s) 263, 308
AluI AGCT 2 cut(s) 263, 308
Alw21I GWGCWC 1 cut(s) 61
Alw26I GTCTC 1 cut(s) 415
AlwI GGATC 3 cut(s) 162, 587, 600
AoxI GGCC 3 cut(s) 41, 67, 611
ApoI RAATTY 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 561
AspS9I GGNCC 1 cut(s) 68
AsuC2I CCSGG 1 cut(s) 632
AsuHPI GGTGA 1 cut(s) 212
BamHI GGATCC 1 cut(s) 592
BarI GAAGNNNNNNTAC 2 cut(s) 30, 62
BauI CACGAG 1 cut(s) 505
Bbv12I GWGCWC 1 cut(s) 61
BccI CCATC 3 cut(s) 125, 164, 191
BceAI ACGGC 2 cut(s) 56, 533
BciT130I CCWGG 2 cut(s) 414, 709
BclI TGATCA 1 cut(s) 433
BcnI CCSGG 1 cut(s) 632
BcoDI GTCTC 1 cut(s) 415
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 666
BfuAI ACCTGC 1 cut(s) 433
BglII AGATCT 1 cut(s) 559
Bme1390I CCNGG 3 cut(s) 414, 632, 709
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 2 cut(s) 594, 695
BmrFI CCNGG 3 cut(s) 414, 632, 709
BmrI ACTGGG 1 cut(s) 609
BmuI ACTGGG 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 632
BsaI GGTCTC 1 cut(s) 415
BsaJI CCNNGG 6 cut(s) 288, 413, 537, 631, 707, 708
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bse1I ACTGG 2 cut(s) 79, 604
BseBI CCWGG 2 cut(s) 414, 709
BseDI CCNNGG 6 cut(s) 288, 413, 537, 631, 707, 708
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 2 cut(s) 79, 604
BseRI GAGGAG 1 cut(s) 283
BshFI GGCC 3 cut(s) 43, 69, 613
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 1 cut(s) 631
BslFI GGGAC 1 cut(s) 725
BsmAI GTCTC 1 cut(s) 415
BsmFI GGGAC 1 cut(s) 725
BsnI GGCC 3 cut(s) 43, 69, 613
Bso31I GGTCTC 1 cut(s) 415
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 5 cut(s) 154, 433, 559, 592, 605
BspACI CCGC 2 cut(s) 11, 718
BspANI GGCC 3 cut(s) 43, 69, 613
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 594, 695
BspMI ACCTGC 1 cut(s) 433
BspPI GGATC 3 cut(s) 162, 587, 600
BspTNI GGTCTC 1 cut(s) 415
BsrI ACTGG 2 cut(s) 79, 604
BssECI CCNNGG 6 cut(s) 288, 413, 537, 631, 707, 708
BssMI GATC 5 cut(s) 154, 433, 559, 592, 605
BssNAI GTATAC 1 cut(s) 8
BssSI CACGAG 1 cut(s) 505
BssT1I CCWWGG 2 cut(s) 288, 537
Bst1107I GTATAC 1 cut(s) 8
Bst2BI CACGAG 1 cut(s) 505
Bst2UI CCWGG 2 cut(s) 414, 709
Bst4CI ACNGT 3 cut(s) 335, 362, 683
Bst6I CTCTTC 3 cut(s) 96, 413, 569
BstDEI CTNAG 5 cut(s) 15, 62, 264, 566, 623
BstKTI GATC 5 cut(s) 157, 436, 562, 595, 608
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 5 cut(s) 154, 433, 559, 592, 605
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 2 cut(s) 414, 709
BstNSI RCATGY 1 cut(s) 664
BstSCI CCNGG 3 cut(s) 412, 630, 707
BstSFI CTRYAG 1 cut(s) 666
BstX2I RGATCY 2 cut(s) 559, 592
BstYI RGATCY 2 cut(s) 559, 592
BstZ17I GTATAC 1 cut(s) 8
BsuRI GGCC 3 cut(s) 43, 69, 613
BveI ACCTGC 1 cut(s) 433
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 38
CviAII CATG 4 cut(s) 437, 486, 609, 661
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 5 cut(s) 15, 62, 264, 566, 623
DpnI GATC 5 cut(s) 156, 435, 561, 594, 607
DpnII GATC 5 cut(s) 154, 433, 559, 592, 605
DraI TTTAAA 2 cut(s) 214, 472
EaeI YGGCCR 1 cut(s) 41
Eam1104I CTCTTC 3 cut(s) 96, 413, 569
EarI CTCTTC 3 cut(s) 96, 413, 569
Eco130I CCWWGG 2 cut(s) 288, 537
Eco31I GGTCTC 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 576
EcoRI GAATTC 1 cut(s) 78
EcoRII CCWGG 2 cut(s) 412, 707
EcoT14I CCWWGG 2 cut(s) 288, 537
ErhI CCWWGG 2 cut(s) 288, 537
FaeI CATG 4 cut(s) 440, 489, 612, 664
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FaqI GGGAC 1 cut(s) 725
FatI CATG 4 cut(s) 436, 485, 608, 660
FauI CCCGC 1 cut(s) 725
FbaI TGATCA 1 cut(s) 433
FblI GTMKAC 3 cut(s) 7, 665, 678
FspBI CTAG 1 cut(s) 342
HaeIII GGCC 3 cut(s) 43, 69, 613
HapII CCGG 1 cut(s) 631
Hin1II CATG 4 cut(s) 440, 489, 612, 664
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HinfI GANTC 3 cut(s) 203, 586, 627
HpaII CCGG 1 cut(s) 631
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 5 cut(s) 8, 331, 658, 666, 679
Hpy188III TCNNGA 3 cut(s) 25, 505, 590
Hpy8I GTNNAC 5 cut(s) 8, 331, 658, 666, 679
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 3 cut(s) 335, 362, 683
HpyCH4V TGCA 1 cut(s) 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 5 cut(s) 15, 62, 264, 566, 623
Hsp92II CATG 4 cut(s) 440, 489, 612, 664
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 5 cut(s) 154, 433, 559, 592, 605
LmnI GCTCC 1 cut(s) 443
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 3 cut(s) 217, 550, 686
MalI GATC 5 cut(s) 156, 435, 561, 594, 607
MboI GATC 5 cut(s) 154, 433, 559, 592, 605
MfeI CAATTG 1 cut(s) 375
MflI RGATCY 2 cut(s) 559, 592
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 6 cut(s) 78, 95, 324, 375, 400, 531
MlyI GAGTC 1 cut(s) 636
MmeI TCCRAC 1 cut(s) 620
MnlI CCTC 2 cut(s) 261, 501
MroXI GAANNNNTTC 1 cut(s) 561
MseI TTAA 4 cut(s) 213, 315, 471, 618
MslI CAYNNNNRTG 1 cut(s) 54
MspI CCGG 1 cut(s) 631
MspR9I CCNGG 3 cut(s) 414, 632, 709
MssI GTTTAAAC 1 cut(s) 472
MunI CAATTG 1 cut(s) 375
MvaI CCWGG 2 cut(s) 414, 709
MwoI GCNNNNNNNGC 1 cut(s) 10
NciI CCSGG 1 cut(s) 632
NdeII GATC 5 cut(s) 154, 433, 559, 592, 605
NlaIII CATG 4 cut(s) 440, 489, 612, 664
NlaIV GGNNCC 2 cut(s) 594, 695
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 1 cut(s) 664
OliI CACNNNNGTG 1 cut(s) 54
PasI CCCWGGG 1 cut(s) 708
PciI ACATGT 1 cut(s) 660
PdmI GAANNNNTTC 1 cut(s) 561
PfeI GAWTC 2 cut(s) 203, 586
PleI GAGTC 1 cut(s) 635
PmeI GTTTAAAC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 635
PscI ACATGT 1 cut(s) 660
Psp6I CCWGG 2 cut(s) 412, 707
PspGI CCWGG 2 cut(s) 412, 707
PspN4I GGNNCC 2 cut(s) 594, 695
PspPI GGNCC 1 cut(s) 68
PsuI RGATCY 2 cut(s) 559, 592
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 4 cut(s) 213, 315, 471, 618
Sau3AI GATC 5 cut(s) 154, 433, 559, 592, 605
Sau96I GGNCC 1 cut(s) 68
SchI GAGTC 1 cut(s) 636
ScrFI CCNGG 3 cut(s) 414, 632, 709
SduI GDGCHC 1 cut(s) 61
SetI ASST 6 cut(s) 261, 265, 310, 415, 427, 673
SfcI CTRYAG 1 cut(s) 666
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
Sse9I AATT 6 cut(s) 78, 95, 324, 375, 400, 531
SsiI CCGC 2 cut(s) 11, 718
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 412, 630, 707
StyI CCWWGG 2 cut(s) 288, 537
TaaI ACNGT 3 cut(s) 335, 362, 683
TaqI TCGA 1 cut(s) 517
TasI AATT 6 cut(s) 78, 95, 324, 375, 400, 531
TfiI GAWTC 2 cut(s) 203, 586
Tru1I TTAA 4 cut(s) 213, 315, 471, 618
Tru9I TTAA 4 cut(s) 213, 315, 471, 618
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 474, 481
XapI RAATTY 1 cut(s) 78
XceI RCATGY 1 cut(s) 664
XmiI GTMKAC 3 cut(s) 7, 665, 678
XmnI GAANNNNTTC 1 cut(s) 561
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.