Rmu_sc0000986.1_g000011

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000986.1
OG0000210
Physical Location & Seq
Reverse (-)
49335 .. 51698
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000986.1_g000011.1.cds

Sequence Viewer

Length: 939 bp
atgatcaccttagtattcgctccgactcggctcatttacacccctaccaggacgagagtcatagcctctggtatgggagtgcgtataccgcccaagtttaccaagaaccacatccgaccatcactttgcaaatgtgttcttcgaggccctagtggacaacgatgtgatgtggaactggagaagagagagaatggcttgttcttccacaatcatggttggcatcgctttgtgaaggatcatcgtctacaatttggggactttctggttttccgttatgatggtgaatcgaagtttaaggttaaaatatatgatagaacttgttgtgagatagatgttgaagtagccaagaggagaaatggccttcctgctgctcccttggcgaatgaaggctaccaattagcttgggtaaaagatgaaattgttgacctgaaaacagaatactacaacagagacgatactgaaaatgctgacaagagaaggcgaaataatcatatgtctggaaagccgccgagagttgaggatggtaaagaaacatcaactggatccatcatcttcaaatcggagtattcatgttttaaagcaactttgaagacaaggtgttcacgatataggatgatgattccaaaggatctagccgtgaccaaaggtcttatgagtaagaagactatagaaattgaagactcaactgggagattgtggcctgctaaacttgtgagtctcacgtctaaagagaacaataagacttgcggcttggccatgtcaacaggttggggagattgttctaaagccaacaagattgcagttggggacaccgttgtttttgagtttgttaaacaaagtgtaattcgacttcatatttttagaaaaggtctaggaacaagaggaggcaataataggcctaaccctgtggtacttgatgcccccaacatcaagaactaa

Protein Analysis

312

Amino Acids

35.51

Weight (kDa)

9.75

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 85, 244
AciI CCGC 3 cut(s) 89, 506, 747
AclWI GGATC 4 cut(s) 243, 537, 550, 636
AcoI YGGCCR 1 cut(s) 753
AfaI GTAC 1 cut(s) 912
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 4 cut(s) 338, 556, 589, 677
AhdI GACNNNNNGTC 1 cut(s) 645
AjiI CACGTC 1 cut(s) 723
AjnI CCWGG 1 cut(s) 47
AluBI AGCT 1 cut(s) 401
AluI AGCT 1 cut(s) 401
Alw26I GTCTC 2 cut(s) 444, 722
AlwI GGATC 4 cut(s) 243, 537, 550, 636
AoxI GGCC 5 cut(s) 145, 358, 698, 753, 896
ApeKI GCWGC 1 cut(s) 368
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 293
BalI TGGCCA 1 cut(s) 755
BamHI GGATCC 1 cut(s) 542
BarI GAAGNNNNNNTAC 2 cut(s) 834, 866
BbsI GAAGAC 3 cut(s) 596, 668, 684
BbvI GCAGC 1 cut(s) 355
BccI CCATC 4 cut(s) 127, 272, 515, 554
BceAI ACGGC 1 cut(s) 620
BciT130I CCWGG 1 cut(s) 49
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 444, 722
BfaI CTAG 3 cut(s) 150, 632, 872
BfmI CTRYAG 1 cut(s) 666
BisI GCNGC 3 cut(s) 369, 506, 748
BlsI GCNGC 3 cut(s) 370, 507, 749
Bme1390I CCNGG 1 cut(s) 49
BmeRI GACNNNNNGTC 1 cut(s) 645
BmgBI CACGTC 1 cut(s) 723
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 544
BmrFI CCNGG 1 cut(s) 49
BmrI ACTGGG 1 cut(s) 696
BmsI GCATC 2 cut(s) 229, 907
BmuI ACTGGG 1 cut(s) 696
BoxI GACNNNNGTC 1 cut(s) 56
BpiI GAAGAC 3 cut(s) 596, 668, 684
BpmI CTGGAG 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 375
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse1I ACTGG 3 cut(s) 180, 544, 691
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 3 cut(s) 111, 526, 618
BseLI CCNNNNNNNGG 1 cut(s) 48
BseNI ACTGG 3 cut(s) 180, 544, 691
BseRI GAGGAG 2 cut(s) 364, 897
BseXI GCAGC 1 cut(s) 355
BshFI GGCC 5 cut(s) 147, 360, 700, 755, 898
BslFI GGGAC 2 cut(s) 269, 821
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 2 cut(s) 444, 722
BsmBI CGTCTC 1 cut(s) 444
BsmFI GGGAC 2 cut(s) 269, 821
BsnI GGCC 5 cut(s) 147, 360, 700, 755, 898
Bsp143I GATC 4 cut(s) 3, 235, 542, 628
BspACI CCGC 3 cut(s) 89, 506, 747
BspANI GGCC 5 cut(s) 147, 360, 700, 755, 898
BspLI GGNNCC 1 cut(s) 544
BspPI GGATC 4 cut(s) 243, 537, 550, 636
BsrI ACTGG 3 cut(s) 180, 544, 691
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 4 cut(s) 3, 235, 542, 628
BssNAI GTATAC 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 375
Bst1107I GTATAC 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 814
Bst6I CTCTTC 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 702
BstDEI CTNAG 1 cut(s) 10
BstF5I GGATG 3 cut(s) 111, 526, 618
BstKTI GATC 4 cut(s) 6, 238, 545, 631
BstMAI GTCTC 2 cut(s) 444, 722
BstMBI GATC 4 cut(s) 3, 235, 542, 628
BstMWI GCNNNNNNNGC 2 cut(s) 88, 377
BstNI CCWGG 1 cut(s) 49
BstPAI GACNNNNGTC 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 666
BstV1I GCAGC 1 cut(s) 355
BstV2I GAAGAC 3 cut(s) 596, 668, 684
BstX2I RGATCY 2 cut(s) 542, 628
BstXI CCANNNNNNTGG 1 cut(s) 212
BstYI RGATCY 2 cut(s) 542, 628
BstZ17I GTATAC 1 cut(s) 86
BsuRI GGCC 5 cut(s) 147, 360, 700, 755, 898
BtgZI GCGATG 1 cut(s) 206
BtrI CACGTC 1 cut(s) 723
BtsCI GGATG 3 cut(s) 111, 526, 618
Cac8I GCNNGC 1 cut(s) 702
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 911
CviAII CATG 3 cut(s) 212, 570, 757
CviQI GTAC 1 cut(s) 911
DdeI CTNAG 1 cut(s) 10
DpnI GATC 4 cut(s) 5, 237, 544, 630
DpnII GATC 4 cut(s) 3, 235, 542, 628
DraI TTTAAA 1 cut(s) 577
DriI GACNNNNNGTC 1 cut(s) 645
EaeI YGGCCR 1 cut(s) 753
Eam1104I CTCTTC 1 cut(s) 176
Eam1105I GACNNNNNGTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 375
Eco147I AGGCCT 1 cut(s) 898
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 375
Esp3I CGTCTC 1 cut(s) 444
FaeI CATG 3 cut(s) 215, 573, 760
FaqI GGGAC 2 cut(s) 269, 821
FatI CATG 3 cut(s) 211, 569, 756
FauNDI CATATG 1 cut(s) 492
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 2 cut(s) 85, 244
Fnu4HI GCNGC 3 cut(s) 369, 506, 748
FokI GGATG 3 cut(s) 98, 533, 625
Fsp4HI GCNGC 3 cut(s) 369, 506, 748
FspBI CTAG 3 cut(s) 150, 632, 872
GluI GCNGC 3 cut(s) 369, 506, 748
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 5 cut(s) 147, 360, 700, 755, 898
Hin1II CATG 3 cut(s) 215, 573, 760
HincII GTYRAC 2 cut(s) 424, 762
HindII GTYRAC 2 cut(s) 424, 762
HinfI GANTC 6 cut(s) 25, 57, 284, 619, 680, 715
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 7 cut(s) 86, 99, 155, 245, 424, 602, 762
Hpy188I TCNGA 3 cut(s) 24, 116, 562
Hpy188III TCNNGA 3 cut(s) 498, 603, 931
Hpy8I GTNNAC 7 cut(s) 86, 99, 155, 245, 424, 602, 762
HpyAV CCTTC 4 cut(s) 226, 371, 380, 471
HpyCH4III ACNGT 1 cut(s) 814
HpyCH4IV ACGT 1 cut(s) 722
HpyCH4V TGCA 2 cut(s) 129, 800
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 377
HpyF3I CTNAG 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 722
Hsp92II CATG 3 cut(s) 215, 573, 760
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 235, 542, 628
LmnI GCTCC 2 cut(s) 25, 376
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 2 cut(s) 229, 907
MaeI CTAG 3 cut(s) 150, 632, 872
MaeII ACGT 1 cut(s) 722
MaeIII GTNAC 1 cut(s) 637
MalI GATC 4 cut(s) 5, 237, 544, 630
MboI GATC 4 cut(s) 3, 235, 542, 628
MboII GAAGA 7 cut(s) 131, 193, 193, 544, 601, 673, 689
MflI RGATCY 2 cut(s) 542, 628
MlsI TGGCCA 1 cut(s) 755
MluCI AATT 5 cut(s) 248, 395, 417, 672, 843
MluNI TGGCCA 1 cut(s) 755
MlyI GAGTC 4 cut(s) 19, 66, 674, 724
MmeI TCCRAC 2 cut(s) 47, 139
MnlI CCTC 6 cut(s) 76, 137, 342, 511, 875, 878
Mox20I TGGCCA 1 cut(s) 755
MscI TGGCCA 1 cut(s) 755
MseI TTAA 4 cut(s) 294, 300, 576, 831
MslI CAYNNNNRTG 1 cut(s) 210
Msp20I TGGCCA 1 cut(s) 755
MspR9I CCNGG 1 cut(s) 49
MvaI CCWGG 1 cut(s) 49
MwoI GCNNNNNNNGC 2 cut(s) 88, 377
NdeI CATATG 1 cut(s) 492
NdeII GATC 4 cut(s) 3, 235, 542, 628
NlaIII CATG 3 cut(s) 215, 573, 760
NlaIV GGNNCC 1 cut(s) 544
NmeAIII GCCGAG 2 cut(s) 7, 534
NmuCI GTSAC 1 cut(s) 637
PceI AGGCCT 1 cut(s) 898
PfeI GAWTC 2 cut(s) 284, 619
PkrI GCNGC 3 cut(s) 370, 507, 749
PleI GAGTC 4 cut(s) 19, 65, 674, 723
PpsI GAGTC 4 cut(s) 19, 65, 674, 723
PshAI GACNNNNGTC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 544
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 2 cut(s) 542, 628
RsaI GTAC 1 cut(s) 912
RsaNI GTAC 1 cut(s) 911
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 4 cut(s) 294, 300, 576, 831
SatI GCNGC 3 cut(s) 369, 506, 748
Sau3AI GATC 4 cut(s) 3, 235, 542, 628
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 4 cut(s) 19, 66, 674, 724
ScrFI CCNGG 1 cut(s) 49
SetI ASST 9 cut(s) 11, 300, 403, 429, 599, 649, 725, 769, 871
SfaNI GCATC 2 cut(s) 229, 907
SfcI CTRYAG 1 cut(s) 666
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 5 cut(s) 248, 395, 417, 672, 843
SseBI AGGCCT 1 cut(s) 898
SsiI CCGC 3 cut(s) 89, 506, 747
SspMI CTAG 3 cut(s) 150, 632, 872
StuI AGGCCT 1 cut(s) 898
StyD4I CCNGG 1 cut(s) 47
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 1 cut(s) 814
TaiI ACGT 1 cut(s) 725
TaqI TCGA 3 cut(s) 142, 287, 847
TasI AATT 5 cut(s) 248, 395, 417, 672, 843
TauI GCSGC 2 cut(s) 508, 750
TfiI GAWTC 2 cut(s) 284, 619
Tru1I TTAA 4 cut(s) 294, 300, 576, 831
Tru9I TTAA 4 cut(s) 294, 300, 576, 831
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 4 cut(s) 399, 429, 558, 842
TspGWI ACGGA 1 cut(s) 260
XmiI GTMKAC 2 cut(s) 85, 244
XspI CTAG 3 cut(s) 150, 632, 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.