Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000210

Physical Location & Seq

Genomic Coordinates Reverse (-)

22541314 .. 22542850

Gene Structure 1537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023362

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGAGCTTGAAGAAAGACCATCGTTTTTCAAGGTCCTTGTTGGTGACTTCTCCCAGCAACTGCGTATACCACGTGCGTTTGTGAAGAACTTCAACGGTCATGTACCACGAATGTGTGGCCTTAGAGGCCCTTGTGGAAACTTGTGGGCTGTGAATTTAAAAGAGATTGAGGATCGTGTGGTTTTCCATAATGGTTGGCAGAGTTTTGCAAAGCATCATTTTCTGGAAGTTGGGGATCTCTTGATTTTCACTAAAGATGATGGATCAATTTTTGATGTCATAATTTATGATAAAAGCTACTGTGAGAAGAATGTTGAAGCAGCCAAGAGCAGGATTGGCAATGCTGTGGACAGAACAATTAGTAAGTTATACTGTTTATTATTTCATTTCTCTACAGCTTATAGAAGTTTGGTGTACAACCACGTCATTTTAGGAAAGAGACCTGCACTTGATCTTGTGGAAGAAACATCTATTGGATCCATCTCTTTAAATCCGGAGAATCCATTTTTTACTACTATTTTTACGAGGTATACTCGATATGACCTGAGAATTCCAAGCAAAGTAGTCATAGCTGCAGGTCTTATGAACAATAAAACTATAATGCTTCAAGATCCAACTGGGAGGCCATGGTCTATTAAACTCAACGAAACAACAAGGGGTCAAATGCGTATGGAAGGCTGGTGTAATGTTTGTAAAGAGAACCAAATTTCAGTTGGAGACACCCTCGTTATTGAGGTAGTCAAGCATTCTGTACTTCAACTCCATGTTTATAAAGTAGGAGCAGCCCTGGATGTCGAAACTCAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

270

Amino Acids

30.66

Weight (kDa)

8.47

Isoelectric Point (pI)

28.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	9 - 91	1.4e-12	B3 DNA binding domain
B3	PF02362	177 - 256	3.3e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66980
fragaria_vesca	FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica	MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica	Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis	pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis	RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata	RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora	Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii	Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa	Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha	Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana	Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	771
Acc36I	ACCTGC	2 cut(s)	451, 566
AccI	GTMKAC	2 cut(s)	67, 530
AccIII	TCCGGA	1 cut(s)	493
AclWI	GGATC	6 cut(s)	180, 243, 271, 471, 484, 605
AcsI	RAATTY	3 cut(s)	154, 549, 705
AcvI	CACGTG	1 cut(s)	74
AfaI	GTAC	3 cut(s)	105, 416, 753
AfiI	CCNNNNNNNGG	1 cut(s)	330
AgsI	TTSAA	6 cut(s)	11, 31, 94, 317, 608, 758
AjiI	CACGTC	1 cut(s)	424
AjnI	CCWGG	1 cut(s)	786
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
AleI	CACNNNNGTG	1 cut(s)	112
AluBI	AGCT	5 cut(s)	7, 297, 398, 572, 807
AluI	AGCT	5 cut(s)	7, 297, 398, 572, 807
Alw26I	GTCTC	2 cut(s)	433, 711
AlwI	GGATC	6 cut(s)	180, 243, 271, 471, 484, 605
AlwNI	CAGNNNCTG	1 cut(s)	61
Aor13HI	TCCGGA	1 cut(s)	493
AoxI	GGCC	3 cut(s)	118, 127, 623
ApeKI	GCWGC	3 cut(s)	320, 572, 782
ApoI	RAATTY	3 cut(s)	154, 549, 705
Asp700I	GAANNNNTTC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	34, 128
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	34
BamHI	GGATCC	1 cut(s)	476
BbrPI	CACGTG	1 cut(s)	74
BbvI	GCAGC	3 cut(s)	332, 559, 794
BccI	CCATC	3 cut(s)	28, 254, 488
BciT130I	CCWGG	1 cut(s)	788
BcoDI	GTCTC	2 cut(s)	433, 711
BfaI	CTAG	1 cut(s)	808
BfmI	CTRYAG	2 cut(s)	393, 573
BfuAI	ACCTGC	2 cut(s)	451, 566
BglI	GCCNNNNNGGC	1 cut(s)	126
BisI	GCNGC	3 cut(s)	321, 573, 783
BlsI	GCNGC	3 cut(s)	322, 574, 784
Bme1390I	CCNGG	1 cut(s)	788
Bme18I	GGWCC	1 cut(s)	34
BmgBI	CACGTC	1 cut(s)	424
BmgT120I	GGNCC	2 cut(s)	34, 128
BmiI	GGNNCC	1 cut(s)	478
BmrFI	CCNGG	1 cut(s)	788
BmrI	ACTGGG	1 cut(s)	627
BmsI	GCATC	1 cut(s)	223
BmuI	ACTGGG	1 cut(s)	627
BplI	GAGNNNNNCTC	4 cut(s)	517, 549, 708, 740
BsaAI	YACGTR	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	433
BsaJI	CCNNGG	2 cut(s)	626, 786
BsaWI	WCCGGW	1 cut(s)	493
BsaXI	ACNNNNNCTCC	2 cut(s)	744, 774
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse1I	ACTGG	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	346
BseAI	TCCGGA	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	788
BseDI	CCNNGG	2 cut(s)	626, 786
BseGI	GGATG	1 cut(s)	796
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	536
BseNI	ACTGG	1 cut(s)	622
BseXI	GCAGC	3 cut(s)	332, 559, 794
BseYI	CCCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	429
BshFI	GGCC	3 cut(s)	120, 129, 625
BsiSI	CCGG	1 cut(s)	494
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmAI	GTCTC	2 cut(s)	433, 711
BsmI	GAATGC	1 cut(s)	745
BsnI	GGCC	3 cut(s)	120, 129, 625
Bso31I	GGTCTC	1 cut(s)	433
Bsp13I	TCCGGA	1 cut(s)	493
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	6 cut(s)	172, 235, 263, 451, 476, 610
Bsp19I	CCATGG	1 cut(s)	626
BspANI	GGCC	3 cut(s)	120, 129, 625
BspCNI	CTCAG	1 cut(s)	537
BspEI	TCCGGA	1 cut(s)	493
BspLI	GGNNCC	1 cut(s)	478
BspMAI	CTGCAG	1 cut(s)	577
BspMI	ACCTGC	2 cut(s)	451, 566
BspPI	GGATC	6 cut(s)	180, 243, 271, 471, 484, 605
BspTNI	GGTCTC	1 cut(s)	433
BsrDI	GCAATG	1 cut(s)	346
BsrGI	TGTACA	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	622
BssECI	CCNNGG	2 cut(s)	626, 786
BssMI	GATC	6 cut(s)	172, 235, 263, 451, 476, 610
BssNAI	GTATAC	2 cut(s)	68, 531
BssT1I	CCWWGG	1 cut(s)	626
Bst1107I	GTATAC	2 cut(s)	68, 531
Bst2UI	CCWGG	1 cut(s)	788
Bst4CI	ACNGT	3 cut(s)	98, 302, 374
BstAUI	TGTACA	1 cut(s)	414
BstBAI	YACGTR	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	122, 545
BstDSI	CCRYGG	1 cut(s)	626
BstF5I	GGATG	1 cut(s)	796
BstKTI	GATC	6 cut(s)	175, 238, 266, 454, 479, 613
BstMAI	GTCTC	2 cut(s)	433, 711
BstMBI	GATC	6 cut(s)	172, 235, 263, 451, 476, 610
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 336
BstNI	CCWGG	1 cut(s)	788
BstSCI	CCNGG	1 cut(s)	786
BstSFI	CTRYAG	2 cut(s)	393, 573
BstV1I	GCAGC	3 cut(s)	332, 559, 794
BstX2I	RGATCY	3 cut(s)	235, 476, 610
BstYI	RGATCY	3 cut(s)	235, 476, 610
BstZ17I	GTATAC	2 cut(s)	68, 531
BsuRI	GGCC	3 cut(s)	120, 129, 625
BtgI	CCRYGG	1 cut(s)	626
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	796
BveI	ACCTGC	2 cut(s)	451, 566
CaiI	CAGNNNCTG	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	34, 128
Csp6I	GTAC	3 cut(s)	104, 415, 752
CviAII	CATG	3 cut(s)	101, 627, 764
CviQI	GTAC	3 cut(s)	104, 415, 752
DdeI	CTNAG	2 cut(s)	122, 545
DpnI	GATC	6 cut(s)	174, 237, 265, 453, 478, 612
DpnII	GATC	6 cut(s)	172, 235, 263, 451, 476, 610
DraI	TTTAAA	2 cut(s)	159, 489
Eco130I	CCWWGG	1 cut(s)	626
Eco31I	GGTCTC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	34
Eco72I	CACGTG	1 cut(s)	74
EcoO109I	RGGNCCY	2 cut(s)	34, 128
EcoRI	GAATTC	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	786
EcoT14I	CCWWGG	1 cut(s)	626
ErhI	CCWWGG	1 cut(s)	626
FaeI	CATG	3 cut(s)	104, 630, 767
FatI	CATG	3 cut(s)	100, 626, 763
FblI	GTMKAC	2 cut(s)	67, 530
Fnu4HI	GCNGC	3 cut(s)	321, 573, 783
FokI	GGATG	1 cut(s)	803
Fsp4HI	GCNGC	3 cut(s)	321, 573, 783
FspBI	CTAG	1 cut(s)	808
GluI	GCNGC	3 cut(s)	321, 573, 783
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	3 cut(s)	120, 129, 625
HapII	CCGG	1 cut(s)	494
Hin1II	CATG	3 cut(s)	104, 630, 767
HinfI	GANTC	1 cut(s)	499
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	4 cut(s)	68, 349, 415, 531
Hpy188III	TCNNGA	4 cut(s)	224, 241, 494, 608
Hpy8I	GTNNAC	4 cut(s)	68, 349, 415, 531
HpyAV	CCTTC	1 cut(s)	668
HpyCH4III	ACNGT	3 cut(s)	98, 302, 374
HpyCH4IV	ACGT	2 cut(s)	73, 423
HpyCH4V	TGCA	3 cut(s)	209, 446, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 336
HpyF3I	CTNAG	2 cut(s)	122, 545
HpySE526I	ACGT	2 cut(s)	73, 423
Hsp92II	CATG	3 cut(s)	104, 630, 767
Kpn2I	TCCGGA	1 cut(s)	493
Kzo9I	GATC	6 cut(s)	172, 235, 263, 451, 476, 610
LmnI	GCTCC	2 cut(s)	4, 779
Lsp1109I	GCAGC	3 cut(s)	332, 559, 794
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	808
MaeII	ACGT	2 cut(s)	73, 423
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	6 cut(s)	174, 237, 265, 453, 478, 612
MboI	GATC	6 cut(s)	172, 235, 263, 451, 476, 610
MboII	GAAGA	4 cut(s)	23, 97, 319, 473
MflI	RGATCY	3 cut(s)	235, 476, 610
MluCI	AATT	6 cut(s)	154, 267, 282, 357, 549, 705
MmeI	TCCRAC	2 cut(s)	638, 694
MnlI	CCTC	6 cut(s)	119, 163, 519, 615, 727, 734
MroI	TCCGGA	1 cut(s)	493
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	3 cut(s)	158, 488, 636
MslI	CAYNNNNRTG	1 cut(s)	112
MspI	CCGG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	788
Mva1269I	GAATGC	1 cut(s)	745
MvaI	CCWGG	1 cut(s)	788
MwoI	GCNNNNNNNGC	2 cut(s)	126, 336
NcoI	CCATGG	1 cut(s)	626
NdeII	GATC	6 cut(s)	172, 235, 263, 451, 476, 610
NlaIII	CATG	3 cut(s)	104, 630, 767
NlaIV	GGNNCC	1 cut(s)	478
NmuCI	GTSAC	1 cut(s)	44
OliI	CACNNNNGTG	1 cut(s)	112
PctI	GAATGC	1 cut(s)	745
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	499
PkrI	GCNGC	3 cut(s)	322, 574, 784
PmaCI	CACGTG	1 cut(s)	74
PmlI	CACGTG	1 cut(s)	74
Ppu21I	YACGTR	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	34
PsiI	TTATAA	1 cut(s)	771
Psp5II	RGGWCCY	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	786
PspCI	CACGTG	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	786
PspN4I	GGNNCC	1 cut(s)	478
PspPI	GGNCC	2 cut(s)	34, 128
PspPPI	RGGWCCY	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	577
PstNI	CAGNNNCTG	1 cut(s)	61
PsuI	RGATCY	3 cut(s)	235, 476, 610
RsaI	GTAC	3 cut(s)	105, 416, 753
RsaNI	GTAC	3 cut(s)	104, 415, 752
RseI	CAYNNNNRTG	1 cut(s)	112
SaqAI	TTAA	3 cut(s)	158, 488, 636
SatI	GCNGC	3 cut(s)	321, 573, 783
Sau3AI	GATC	6 cut(s)	172, 235, 263, 451, 476, 610
Sau96I	GGNCC	2 cut(s)	34, 128
ScrFI	CCNGG	1 cut(s)	788
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	2 cut(s)	393, 573
SfiI	GGCCNNNNNGGCC	1 cut(s)	126
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	112
Sse9I	AATT	6 cut(s)	154, 267, 282, 357, 549, 705
SspMI	CTAG	1 cut(s)	808
StyD4I	CCNGG	1 cut(s)	786
StyI	CCWWGG	1 cut(s)	626
TaaI	ACNGT	3 cut(s)	98, 302, 374
TaiI	ACGT	2 cut(s)	76, 426
TaqI	TCGA	2 cut(s)	535, 795
TasI	AATT	6 cut(s)	154, 267, 282, 357, 549, 705
TatI	WGTACW	2 cut(s)	414, 751
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	3 cut(s)	158, 488, 636
Tru9I	TTAA	3 cut(s)	158, 488, 636
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	3 cut(s)	320, 572, 782
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	374, 599
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	3 cut(s)	154, 549, 705
XcmI	CCANNNNNNNNNTGG	1 cut(s)	710
XmiI	GTMKAC	2 cut(s)	67, 530
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.