Rh1CG034500

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000210
Physical Location & Seq
Forward (+)
6561463 .. 6566708
5246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG034500.1

Sequence Viewer

Length: 846 bp
ATGAACGAGATAGAGTTATTGCTCAGCTGGGTTTCTTCTCTGTGTGTATGTCCTTTTGGACATTACTCAAAGCATTTATATTTGGAGTCAATGCTTACTGTGTACCGGTACCATGTCCTTATGCTCACTTCATTCAGCTTTATTCTTTTTTATCTATTTTTTTTTCTTCTCTTTTGTTTTTGTTGGTTTACATATTTATCTTGGGGATTCAAGGCAGTCCTTACTTCTGCTGCTGCCTCAGAGTTTAACTTGGAGAGAGAGTTCTGCATTTCCTGTTCTTGCATGTTCAAAACTTCAAGGTATCATCTTCAAATGGCTCATTCAGTACCAGTGCCTGCCTTTTTCCAGGTCCTTGTTGGTGATTTCTCTGAGAAACTGAAAATGCCAACAGCTTTTGTCAACCACTTCAATGGATCAGCACTTTGCAAACTTCGAGGCCCTAGTGGAAAGTGCTGGGATGTAATATTGGAAGAGGAAAATAATGATATTTTCTTCCATAAAGGCTGGAATAAATTTGTGAAGGATAATTTTTTGGAGGAAGGACACATTTTGGTTTTCAATTATGATGGCAATTCTTGGTTCAATGCGACAATCTATGATAAAGGTGCATGTGAAATGGACATGGAAGCAGCCAAGACAAAGAGAAGTACTGGCGGTCTTGATGGTCAAAGGAGAGATTATGTCATGCCTGGGGAGACAAGAATCAGAATCATTGAGTTCAAATCACAGCATCTTTGCTTTAAGAGAACTATGGAGAAGCACAGACTGTATCAGCTGGTAAGTAATAAGTGGTCATACCCAATGAATAAGCTAATTATGTTTCTAAAACCCTTTTCCCTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

281

Amino Acids

33.03

Weight (kDa)

8.42

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 122 - 198 9.6e-14 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 108
AciI CCGC 1 cut(s) 654
AclWI GGATC 1 cut(s) 421
AcsI RAATTY 1 cut(s) 512
AfaI GTAC 4 cut(s) 104, 110, 327, 649
AgeI ACCGGT 1 cut(s) 105
AgsI TTSAA 8 cut(s) 211, 289, 297, 311, 409, 559, 583, 721
AjnI CCWGG 2 cut(s) 345, 688
AloI GAACNNNNNNTCC 2 cut(s) 245, 277
AluBI AGCT 5 cut(s) 27, 138, 392, 775, 811
AluI AGCT 5 cut(s) 27, 138, 392, 775, 811
Alw26I GTCTC 1 cut(s) 689
AlwI GGATC 1 cut(s) 421
AlwNI CAGNNNCTG 1 cut(s) 335
AoxI GGCC 1 cut(s) 436
ApeKI GCWGC 3 cut(s) 230, 233, 629
ApoI RAATTY 1 cut(s) 512
AsiGI ACCGGT 1 cut(s) 105
Asp718I GGTACC 1 cut(s) 108
AspS9I GGNCC 2 cut(s) 349, 437
AsuHPI GGTGA 1 cut(s) 371
AvaII GGWCC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 108
BbvI GCAGC 3 cut(s) 217, 220, 641
BccI CCATC 2 cut(s) 560, 656
BciT130I CCWGG 2 cut(s) 347, 690
BcoDI GTCTC 1 cut(s) 689
BfaI CTAG 1 cut(s) 441
BisI GCNGC 3 cut(s) 231, 234, 630
BlpI GCTNAGC 1 cut(s) 23
BlsI GCNGC 3 cut(s) 232, 235, 631
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 2 cut(s) 347, 690
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 2 cut(s) 349, 437
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 2 cut(s) 347, 690
BmsI GCATC 1 cut(s) 739
Bpu1102I GCTNAGC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 689
BsaWI WCCGGW 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bse118I RCCGGY 1 cut(s) 105
Bse1I ACTGG 2 cut(s) 329, 655
BseBI CCWGG 2 cut(s) 347, 690
BseDI CCNNGG 1 cut(s) 689
BseGI GGATG 1 cut(s) 463
BseMII CTCAG 3 cut(s) 37, 252, 360
BseNI ACTGG 2 cut(s) 329, 655
BseXI GCAGC 3 cut(s) 217, 220, 641
BseYI CCCAGC 2 cut(s) 27, 453
BshFI GGCC 1 cut(s) 438
BshNI GGYRCC 1 cut(s) 108
BshTI ACCGGT 1 cut(s) 105
BsiSI CCGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 689
BsnI GGCC 1 cut(s) 438
Bsp143I GATC 1 cut(s) 413
Bsp1720I GCTNAGC 1 cut(s) 23
BspACI CCGC 1 cut(s) 654
BspANI GGCC 1 cut(s) 438
BspCNI CTCAG 3 cut(s) 36, 251, 361
BspLI GGNNCC 1 cut(s) 110
BspPI GGATC 1 cut(s) 421
BspT107I GGYRCC 1 cut(s) 108
BsrFI RCCGGY 1 cut(s) 105
BsrI ACTGG 2 cut(s) 329, 655
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 689
BssMI GATC 1 cut(s) 413
Bst2UI CCWGG 2 cut(s) 347, 690
Bst4CI ACNGT 2 cut(s) 100, 768
Bst6I CTCTTC 1 cut(s) 465
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 3 cut(s) 23, 238, 369
BstF5I GGATG 1 cut(s) 463
BstKTI GATC 1 cut(s) 416
BstMAI GTCTC 1 cut(s) 689
BstMBI GATC 1 cut(s) 413
BstNI CCWGG 2 cut(s) 347, 690
BstNSI RCATGY 2 cut(s) 286, 612
BstSCI CCNGG 2 cut(s) 345, 688
BstV1I GCAGC 3 cut(s) 217, 220, 641
BstXI CCANNNNNNTGG 1 cut(s) 410
BsuRI GGCC 1 cut(s) 438
BtsCI GGATG 1 cut(s) 463
BtsIMutI CAGTG 1 cut(s) 336
Cac8I GCNNGC 1 cut(s) 336
CaiI CAGNNNCTG 1 cut(s) 335
Cfr10I RCCGGY 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 349, 437
Csp6I GTAC 4 cut(s) 103, 109, 326, 648
CspAI ACCGGT 1 cut(s) 105
CviAII CATG 5 cut(s) 113, 283, 609, 622, 685
CviJI RGCY 9 cut(s) 27, 138, 317, 392, 438, 504, 632, 775, 811
CviKI_1 RGCY 9 cut(s) 27, 138, 317, 392, 438, 504, 632, 775, 811
CviQI GTAC 4 cut(s) 103, 109, 326, 648
DdeI CTNAG 3 cut(s) 23, 238, 369
DpnI GATC 1 cut(s) 415
DpnII GATC 1 cut(s) 413
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 349
EcoO109I RGGNCCY 2 cut(s) 349, 437
EcoRII CCWGG 2 cut(s) 345, 688
FaeI CATG 5 cut(s) 116, 286, 612, 625, 688
FatI CATG 5 cut(s) 112, 282, 608, 621, 684
Fnu4HI GCNGC 3 cut(s) 231, 234, 630
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 3 cut(s) 231, 234, 630
FspBI CTAG 1 cut(s) 441
GluI GCNGC 3 cut(s) 231, 234, 630
GsaI CCCAGC 2 cut(s) 31, 457
HaeIII GGCC 1 cut(s) 438
HapII CCGG 1 cut(s) 106
Hin1II CATG 5 cut(s) 116, 286, 612, 625, 688
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 4 cut(s) 86, 207, 702, 708
HpaII CCGG 1 cut(s) 106
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 3 cut(s) 103, 189, 400
Hpy188I TCNGA 3 cut(s) 241, 370, 707
Hpy188III TCNNGA 1 cut(s) 659
Hpy8I GTNNAC 3 cut(s) 103, 189, 400
HpyAV CCTTC 2 cut(s) 514, 533
HpyCH4III ACNGT 2 cut(s) 100, 768
HpyCH4V TGCA 4 cut(s) 267, 282, 426, 608
HpyF3I CTNAG 3 cut(s) 23, 238, 369
Hsp92II CATG 5 cut(s) 116, 286, 612, 625, 688
KpnI GGTACC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 413
Lsp1109I GCAGC 3 cut(s) 217, 220, 641
LweI GCATC 1 cut(s) 739
MaeI CTAG 1 cut(s) 441
MalI GATC 1 cut(s) 415
MboI GATC 1 cut(s) 413
MboII GAAGA 5 cut(s) 27, 158, 299, 482, 484
MluCI AATT 5 cut(s) 512, 526, 559, 571, 813
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 4 cut(s) 247, 428, 466, 529
MseI TTAA 2 cut(s) 246, 741
MslI CAYNNNNRTG 1 cut(s) 408
MspA1I CMGCKG 2 cut(s) 27, 775
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 2 cut(s) 347, 690
MvaI CCWGG 2 cut(s) 347, 690
NdeII GATC 1 cut(s) 413
NlaIII CATG 5 cut(s) 116, 286, 612, 625, 688
NlaIV GGNNCC 1 cut(s) 110
NspI RCATGY 2 cut(s) 286, 612
PfeI GAWTC 3 cut(s) 207, 702, 708
PinAI ACCGGT 1 cut(s) 105
PkrI GCNGC 3 cut(s) 232, 235, 631
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 349
Psp5II RGGWCCY 1 cut(s) 349
Psp6I CCWGG 2 cut(s) 345, 688
PspFI CCCAGC 2 cut(s) 27, 453
PspGI CCWGG 2 cut(s) 345, 688
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 2 cut(s) 349, 437
PspPPI RGGWCCY 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 335
PvuII CAGCTG 2 cut(s) 27, 775
RsaI GTAC 4 cut(s) 104, 110, 327, 649
RsaNI GTAC 4 cut(s) 103, 109, 326, 648
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 2 cut(s) 246, 741
SatI GCNGC 3 cut(s) 231, 234, 630
Sau3AI GATC 1 cut(s) 413
Sau96I GGNCC 2 cut(s) 349, 437
ScaI AGTACT 1 cut(s) 649
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 347, 690
SetI ASST 8 cut(s) 29, 140, 302, 351, 394, 607, 777, 813
SfaNI GCATC 1 cut(s) 739
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 408
Sse9I AATT 5 cut(s) 512, 526, 559, 571, 813
SsiI CCGC 1 cut(s) 654
SspI AATATT 1 cut(s) 465
SspMI CTAG 1 cut(s) 441
StyD4I CCNGG 2 cut(s) 345, 688
TaaI ACNGT 2 cut(s) 100, 768
TaqI TCGA 1 cut(s) 433
TasI AATT 5 cut(s) 512, 526, 559, 571, 813
TatI WGTACW 1 cut(s) 647
TfiI GAWTC 3 cut(s) 207, 702, 708
Tru1I TTAA 2 cut(s) 246, 741
Tru9I TTAA 2 cut(s) 246, 741
TscAI CASTG 1 cut(s) 336
TseI GCWGC 3 cut(s) 230, 233, 629
TspDTI ATGAA 3 cut(s) 17, 120, 818
TspRI CASTG 1 cut(s) 336
VpaK11BI GGWCC 1 cut(s) 349
XapI RAATTY 1 cut(s) 512
XceI RCATGY 2 cut(s) 286, 612
XcmI CCANNNNNNNNNTGG 1 cut(s) 353
XspI CTAG 1 cut(s) 441
ZrmI AGTACT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.