Rroxscaffold_1G00046940

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
66369760 .. 66373528
3769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00046940.1

Sequence Viewer

Length: 465 bp
ATGGGTAGGAAGCCACCTAAGCGTTCATCAAAGAAACGATCAGTTTTCAAGGTTGTACTTGGTGACTTCTGTACACATCTGAGAATTCCAAAGAAACCAGCCACAGCTGAAGGCATTATGAGCAAGAAGAGTGTGAAGGTTCAAGATCCAATGAGGAGAATATGGCTTGTTAAACTATTGCTTGTTGAATATAAGTGCACCTCTGATCGTATGGAGCGGTGGCAAAAGGCGGGTCAGCTTATTCAGAAGGTTGAAATGGGTAGGAAGCCAACTAAGCGTTCTCCAAAGAAACAATCATTTTTCAAGGTTCTGCTTGGTGACTTTTCTAAGCATCTGGAAGAAGGAGCTCTGTTCCTCTCTTTCTCTGTGGGTGTTGTCGGTCAAAAGAAAAGAAAAGCAGAAAGGGAAAAAATGGAAGAGAGCGAGAAGGTGAGAGAGATGATCAGGAAGGAAGTTCAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.96

Weight (kDa)

10.36

Isoelectric Point (pI)

53.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 217
AciI CCGC 2 cut(s) 217, 230
AclWI GGATC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 2 cut(s) 57, 73
AgsI TTSAA 6 cut(s) 49, 143, 188, 254, 304, 458
AjuI GAANNNNNNNTTGG 2 cut(s) 262, 294
AluBI AGCT 3 cut(s) 107, 238, 347
AluI AGCT 3 cut(s) 107, 238, 347
Alw21I GWGCWC 2 cut(s) 200, 349
Alw44I GTGCAC 1 cut(s) 196
AlwI GGATC 1 cut(s) 140
ApaLI GTGCAC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 84
ArsI GACNNNNNNTTYG 2 cut(s) 217, 249
AsuHPI GGTGA 3 cut(s) 74, 329, 442
BaeGI GKGCMC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 349
Bbv12I GWGCWC 2 cut(s) 200, 349
BclI TGATCA 1 cut(s) 441
BmsI GCATC 1 cut(s) 340
Bpu10I CCTNAGC 1 cut(s) 18
BseMII CTCAG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 169
BseSI GKGCMC 1 cut(s) 200
BsiHKAI GWGCWC 2 cut(s) 200, 349
Bsp1286I GDGCHC 2 cut(s) 200, 349
Bsp1407I TGTACA 1 cut(s) 71
Bsp143I GATC 4 cut(s) 38, 145, 205, 441
BspACI CCGC 2 cut(s) 217, 230
BspCNI CTCAG 1 cut(s) 72
BspPI GGATC 1 cut(s) 140
BsrBI CCGCTC 1 cut(s) 217
BsrGI TGTACA 1 cut(s) 71
BssMI GATC 4 cut(s) 38, 145, 205, 441
Bst6I CTCTTC 2 cut(s) 122, 411
BstAUI TGTACA 1 cut(s) 71
BstDEI CTNAG 4 cut(s) 18, 80, 273, 327
BstKTI GATC 4 cut(s) 41, 148, 208, 444
BstMBI GATC 4 cut(s) 38, 145, 205, 441
BstMWI GCNNNNNNNGC 3 cut(s) 19, 120, 274
BstSLI GKGCMC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
Csp6I GTAC 2 cut(s) 56, 72
CviJI RGCY 7 cut(s) 13, 101, 107, 166, 238, 268, 347
CviKI_1 RGCY 7 cut(s) 13, 101, 107, 166, 238, 268, 347
CviQI GTAC 2 cut(s) 56, 72
DdeI CTNAG 4 cut(s) 18, 80, 273, 327
DpnI GATC 4 cut(s) 40, 147, 207, 443
DpnII GATC 4 cut(s) 38, 145, 205, 441
Eam1104I CTCTTC 2 cut(s) 122, 411
EarI CTCTTC 2 cut(s) 122, 411
Ecl136II GAGCTC 1 cut(s) 347
Eco24I GRGCYC 1 cut(s) 349
Eco53kI GAGCTC 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 349
FaiI YATR 4 cut(s) 119, 163, 192, 212
FauI CCCGC 1 cut(s) 223
FbaI TGATCA 1 cut(s) 441
FriOI GRGCYC 1 cut(s) 349
HphI GGTGA 3 cut(s) 74, 329, 442
Hpy166II GTNNAC 2 cut(s) 74, 198
Hpy188I TCNGA 3 cut(s) 81, 205, 246
Hpy188III TCNNGA 4 cut(s) 143, 335, 445, 458
Hpy8I GTNNAC 2 cut(s) 74, 198
HpyAV CCTTC 6 cut(s) 104, 130, 241, 335, 421, 442
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 120, 274
HpyF3I CTNAG 4 cut(s) 18, 80, 273, 327
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 4 cut(s) 38, 145, 205, 441
LmnI GCTCC 2 cut(s) 214, 344
LpnPI CCDG 3 cut(s) 111, 320, 430
LweI GCATC 1 cut(s) 340
MaeIII GTNAC 2 cut(s) 62, 317
MalI GATC 4 cut(s) 40, 147, 207, 443
MbiI CCGCTC 1 cut(s) 217
MboI GATC 4 cut(s) 38, 145, 205, 441
MboII GAAGA 3 cut(s) 139, 350, 428
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 2 cut(s) 200, 349
MluCI AATT 1 cut(s) 84
MnlI CCTC 3 cut(s) 147, 211, 365
MseI TTAA 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 107
MwoI GCNNNNNNNGC 3 cut(s) 19, 120, 274
NdeII GATC 4 cut(s) 38, 145, 205, 441
NmuCI GTSAC 2 cut(s) 62, 317
Psp124BI GAGCTC 1 cut(s) 349
PsuI RGATCY 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 2 cut(s) 57, 73
RsaNI GTAC 2 cut(s) 56, 72
SacI GAGCTC 1 cut(s) 349
SaqAI TTAA 1 cut(s) 171
Sau3AI GATC 4 cut(s) 38, 145, 205, 441
SduI GDGCHC 2 cut(s) 200, 349
SfaNI GCATC 1 cut(s) 340
Sse9I AATT 1 cut(s) 84
SsiI CCGC 2 cut(s) 217, 230
SstI GAGCTC 1 cut(s) 349
TaqII GACCGA 1 cut(s) 368
TasI AATT 1 cut(s) 84
TatI WGTACW 2 cut(s) 55, 71
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseFI GTSAC 2 cut(s) 62, 317
Tsp45I GTSAC 2 cut(s) 62, 317
TspDTI ATGAA 1 cut(s) 15
VneI GTGCAC 1 cut(s) 196
XapI RAATTY 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.