Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000210

Physical Location & Seq

Genomic Coordinates Forward (+)

27416168 .. 27417699

Gene Structure 1532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG228000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGGTAGGAAGCCAACTAAGAAAAAATCCTTTTTCAAGGTCCTGCTTGGTGACTTCTCTAATCATCTGCGTATACCGCCCAAGTTTACCAAGAACCACATCCAACCATCACTTTGCAAATGTGTTCTTAGAGGCCTTAGTGGACAACGATGTGATGTGGAACTGGAAAGGAGAGAGAATGGCTTGTTCTTCCACAATCATGGTTGGCATCGCTTTGTGAACGATCATCGTCTACAATTTGGGGACTTTCTGGTTTTCTGTTATGATGGTCAATCGAAGTTTAAGGTTAAAATATATGATAGAACTTGTTGTGAGATAGATGTTGAAGTAGCCAAGAGGAGAAATGGCCTTCCTGCTGCTCCCTCGGCGAATGAAGGCTACCAATTAGCTTGGGTAAAAGATGAAATTGTTGACCTGAAAACCGAATACTACAACAGAGACGATACTGAAAATGCTGACAAGAGAAGGCGAAATAATCATATGTCTGGAAAGCCGCCGAGAGTTGAGGATGGTAAAGAAACATCAACTGGATCCATCATCTTCAAATCGGAGTATTCATGTTTTAAAGCAACTTTGACGACAAGGTGTTCACGATATAGGATGACGATTCCAAAGGATCTAGCCGTGACCAAAGGTCTTATGAGTAAGAAGACTATAGAAATTGAAGACTCAACTGGGAGATTGTGGCCTGCTAAACTTGTGAGTCTCACGTCTAAAGAGAACAATAAGACTTGCGGCTTGGCCATGTCAACAGGTTGGGGAGAATGTTCTAAAGCCAACAAGATTGCAGTTGGGGACACCGTTGTTTTTGAGTTTGTTAAACAAAGTGTAATTCGACTTCATATTTTTAGAAAAGGTCTAGGAACAAGAGGAGGCAATAATAGGCCTAACTCTGTGGTACTTGATGCCCCCAACATCAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

308

Amino Acids

35.09

Weight (kDa)

9.65

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	11 - 101	7.3e-16	B3 DNA binding domain
B3	PF02362	188 - 285	1.5e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66980
fragaria_vesca	FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica	MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica	Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis	pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis	RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata	RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora	Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii	Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa	Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha	Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana	Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	73, 232
AciI	CCGC	3 cut(s)	77, 494, 735
AclWI	GGATC	3 cut(s)	525, 538, 624
AcoI	YGGCCR	1 cut(s)	741
AfaI	GTAC	1 cut(s)	900
AgsI	TTSAA	4 cut(s)	37, 326, 544, 665
AhdI	GACNNNNNGTC	1 cut(s)	633
AjiI	CACGTC	1 cut(s)	711
AluBI	AGCT	1 cut(s)	389
AluI	AGCT	1 cut(s)	389
Alw26I	GTCTC	2 cut(s)	432, 710
AlwI	GGATC	3 cut(s)	525, 538, 624
AoxI	GGCC	5 cut(s)	133, 346, 686, 741, 884
ApeKI	GCWGC	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	743
BamHI	GGATCC	1 cut(s)	530
BarI	GAAGNNNNNNTAC	2 cut(s)	822, 854
BbsI	GAAGAC	2 cut(s)	656, 672
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	4 cut(s)	115, 260, 503, 542
BceAI	ACGGC	1 cut(s)	608
BcoDI	GTCTC	2 cut(s)	432, 710
BfaI	CTAG	2 cut(s)	620, 860
BfmI	CTRYAG	1 cut(s)	654
BisI	GCNGC	3 cut(s)	357, 494, 736
BlsI	GCNGC	3 cut(s)	358, 495, 737
Bme18I	GGWCC	1 cut(s)	40
BmeRI	GACNNNNNGTC	1 cut(s)	633
BmgBI	CACGTC	1 cut(s)	711
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	532
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	2 cut(s)	217, 895
BmuI	ACTGGG	1 cut(s)	684
BpiI	GAAGAC	2 cut(s)	656, 672
BsaJI	CCNNGG	1 cut(s)	363
Bse1I	ACTGG	3 cut(s)	168, 532, 679
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	3 cut(s)	99, 514, 606
BseNI	ACTGG	3 cut(s)	168, 532, 679
BseRI	GAGGAG	2 cut(s)	352, 885
BseXI	GCAGC	1 cut(s)	343
BshFI	GGCC	5 cut(s)	135, 348, 688, 743, 886
BslFI	GGGAC	2 cut(s)	257, 809
BsmAI	GTCTC	2 cut(s)	432, 710
BsmBI	CGTCTC	1 cut(s)	432
BsmFI	GGGAC	2 cut(s)	257, 809
BsnI	GGCC	5 cut(s)	135, 348, 688, 743, 886
Bsp143I	GATC	3 cut(s)	223, 530, 616
BspACI	CCGC	3 cut(s)	77, 494, 735
BspANI	GGCC	5 cut(s)	135, 348, 688, 743, 886
BspLI	GGNNCC	1 cut(s)	532
BspPI	GGATC	3 cut(s)	525, 538, 624
BsrI	ACTGG	3 cut(s)	168, 532, 679
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	3 cut(s)	223, 530, 616
BssNAI	GTATAC	1 cut(s)	74
Bst1107I	GTATAC	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	802
BstC8I	GCNNGC	1 cut(s)	690
BstDEI	CTNAG	3 cut(s)	18, 128, 137
BstF5I	GGATG	3 cut(s)	99, 514, 606
BstKTI	GATC	3 cut(s)	226, 533, 619
BstMAI	GTCTC	2 cut(s)	432, 710
BstMBI	GATC	3 cut(s)	223, 530, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 365
BstSFI	CTRYAG	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	343
BstV2I	GAAGAC	2 cut(s)	656, 672
BstX2I	RGATCY	2 cut(s)	530, 616
BstXI	CCANNNNNNTGG	1 cut(s)	200
BstYI	RGATCY	2 cut(s)	530, 616
BstZ17I	GTATAC	1 cut(s)	74
BsuRI	GGCC	5 cut(s)	135, 348, 688, 743, 886
BtgZI	GCGATG	1 cut(s)	194
BtrI	CACGTC	1 cut(s)	711
BtsCI	GGATG	3 cut(s)	99, 514, 606
Cac8I	GCNNGC	1 cut(s)	690
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	899
CviAII	CATG	3 cut(s)	200, 558, 745
CviQI	GTAC	1 cut(s)	899
DdeI	CTNAG	3 cut(s)	18, 128, 137
DpnI	GATC	3 cut(s)	225, 532, 618
DpnII	GATC	3 cut(s)	223, 530, 616
DraI	TTTAAA	1 cut(s)	565
DriI	GACNNNNNGTC	1 cut(s)	633
EaeI	YGGCCR	1 cut(s)	741
Eam1105I	GACNNNNNGTC	1 cut(s)	633
Eco147I	AGGCCT	2 cut(s)	135, 886
Eco47I	GGWCC	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	432
FaeI	CATG	3 cut(s)	203, 561, 748
FaqI	GGGAC	2 cut(s)	257, 809
FatI	CATG	3 cut(s)	199, 557, 744
FauNDI	CATATG	1 cut(s)	480
FblI	GTMKAC	2 cut(s)	73, 232
Fnu4HI	GCNGC	3 cut(s)	357, 494, 736
FokI	GGATG	3 cut(s)	86, 521, 613
Fsp4HI	GCNGC	3 cut(s)	357, 494, 736
FspBI	CTAG	2 cut(s)	620, 860
GluI	GCNGC	3 cut(s)	357, 494, 736
HaeIII	GGCC	5 cut(s)	135, 348, 688, 743, 886
Hin1II	CATG	3 cut(s)	203, 561, 748
HincII	GTYRAC	2 cut(s)	412, 750
HindII	GTYRAC	2 cut(s)	412, 750
HinfI	GANTC	3 cut(s)	607, 668, 703
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	8 cut(s)	74, 87, 143, 220, 233, 412, 590, 750
Hpy188I	TCNGA	1 cut(s)	550
Hpy188III	TCNNGA	3 cut(s)	486, 591, 919
Hpy8I	GTNNAC	8 cut(s)	74, 87, 143, 220, 233, 412, 590, 750
HpyAV	CCTTC	3 cut(s)	359, 368, 459
HpyCH4III	ACNGT	1 cut(s)	802
HpyCH4IV	ACGT	1 cut(s)	710
HpyCH4V	TGCA	2 cut(s)	117, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 365
HpyF3I	CTNAG	3 cut(s)	18, 128, 137
HpySE526I	ACGT	1 cut(s)	710
Hsp92II	CATG	3 cut(s)	203, 561, 748
Kzo9I	GATC	3 cut(s)	223, 530, 616
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	2 cut(s)	217, 895
MaeI	CTAG	2 cut(s)	620, 860
MaeII	ACGT	1 cut(s)	710
MaeIII	GTNAC	2 cut(s)	50, 625
MalI	GATC	3 cut(s)	225, 532, 618
MboI	GATC	3 cut(s)	223, 530, 616
MboII	GAAGA	4 cut(s)	181, 532, 661, 677
MflI	RGATCY	2 cut(s)	530, 616
MlsI	TGGCCA	1 cut(s)	743
MluCI	AATT	5 cut(s)	236, 383, 405, 660, 831
MluNI	TGGCCA	1 cut(s)	743
MlyI	GAGTC	2 cut(s)	662, 712
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	6 cut(s)	125, 330, 373, 499, 863, 866
Mox20I	TGGCCA	1 cut(s)	743
MscI	TGGCCA	1 cut(s)	743
MseI	TTAA	4 cut(s)	282, 288, 564, 819
MslI	CAYNNNNRTG	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	743
MwoI	GCNNNNNNNGC	2 cut(s)	76, 365
NdeI	CATATG	1 cut(s)	480
NdeII	GATC	3 cut(s)	223, 530, 616
NlaIII	CATG	3 cut(s)	203, 561, 748
NlaIV	GGNNCC	1 cut(s)	532
NmeAIII	GCCGAG	2 cut(s)	344, 522
NmuCI	GTSAC	2 cut(s)	50, 625
PceI	AGGCCT	2 cut(s)	135, 886
PfeI	GAWTC	1 cut(s)	607
PkrI	GCNGC	3 cut(s)	358, 495, 737
PleI	GAGTC	2 cut(s)	662, 711
PpsI	GAGTC	2 cut(s)	662, 711
PpuMI	RGGWCCY	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	1 cut(s)	40
PspPPI	RGGWCCY	1 cut(s)	40
PsuI	RGATCY	2 cut(s)	530, 616
RsaI	GTAC	1 cut(s)	900
RsaNI	GTAC	1 cut(s)	899
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	4 cut(s)	282, 288, 564, 819
SatI	GCNGC	3 cut(s)	357, 494, 736
Sau3AI	GATC	3 cut(s)	223, 530, 616
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	2 cut(s)	662, 712
SetI	ASST	9 cut(s)	42, 288, 391, 417, 587, 637, 713, 757, 859
SfaNI	GCATC	2 cut(s)	217, 895
SfcI	CTRYAG	1 cut(s)	654
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	5 cut(s)	236, 383, 405, 660, 831
SseBI	AGGCCT	2 cut(s)	135, 886
SsiI	CCGC	3 cut(s)	77, 494, 735
SspMI	CTAG	2 cut(s)	620, 860
StuI	AGGCCT	2 cut(s)	135, 886
TaaI	ACNGT	1 cut(s)	802
TaiI	ACGT	1 cut(s)	713
TaqI	TCGA	2 cut(s)	275, 835
TasI	AATT	5 cut(s)	236, 383, 405, 660, 831
TauI	GCSGC	2 cut(s)	496, 738
TfiI	GAWTC	1 cut(s)	607
Tru1I	TTAA	4 cut(s)	282, 288, 564, 819
Tru9I	TTAA	4 cut(s)	282, 288, 564, 819
TseFI	GTSAC	2 cut(s)	50, 625
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	2 cut(s)	50, 625
TspDTI	ATGAA	4 cut(s)	387, 417, 546, 830
VpaK11BI	GGWCC	1 cut(s)	40
XmiI	GTMKAC	2 cut(s)	73, 232
XspI	CTAG	2 cut(s)	620, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.