pycom11g22220

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000210
Physical Location & Seq
Reverse (-)
25229099 .. 25229868
770 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g22220.3

Sequence Viewer

Length: 588 bp
ATGACATCTCCATTAAGATTAGGTAATCGTATACCACCTAAGTTCGTCAAGAACTTCAATGGACGGTCACTTTGCAAATGTGTTATTCGGGGCCCCAATGGATTACGGAGGACTGTGGAATTGGAAGGGAGAAAGAATGGCTTATTCTTCGATGATGGTTGGCAATATTTTGTGAGGGATCATCATTTAGAAAAAGGGGATTTTTTGGTTTTCAAATATGATGGCAAATCAAAGTTTGAAGTTGCAATCTATGATACAACTGCTTGTGAGAAGGATGTAGAGATAGCTGACAGCTGGAGGATTGGCAGTTCTATTCCTTTGTTTAACATCGGACAGGCTCGAGTAAAAGAAGAAATTAATGAACTTCAAACTGACAACTACAACGAAAATTGTGAAAACAAAGTGTTCAATTCTGGAAGAAGGAAGTGCAATCATGTTATATCGGGGAAGAGACCTGTACACGATGACAGAGAAGCAACATCAACTGAATCCGTCGCGTTCAATTCAAAGAACTTGTGTTTTAAAGCAATCTTTAACAATCCAAGGCAATACCGCGCGGTGAGTACGTTAATTATCATCCAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

196

Amino Acids

22.47

Weight (kDa)

9.15

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 31
AccII CGCG 3 cut(s) 497, 555, 557
AciI CCGC 2 cut(s) 553, 557
AclWI GGATC 1 cut(s) 186
AfaI GTAC 2 cut(s) 459, 565
AgsI TTSAA 7 cut(s) 58, 214, 239, 368, 409, 502, 507
AloI GAACNNNNNNTCC 2 cut(s) 292, 324
AluBI AGCT 2 cut(s) 287, 294
AluI AGCT 2 cut(s) 287, 294
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 1 cut(s) 186
Ama87I CYCGRG 1 cut(s) 339
AoxI GGCC 1 cut(s) 91
ApaI GGGCCC 1 cut(s) 95
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
AseI ATTAAT 1 cut(s) 357
AspLEI GCGC 1 cut(s) 557
AspS9I GGNCC 2 cut(s) 91, 92
AsuHPI GGTGA 1 cut(s) 571
AvaI CYCGRG 1 cut(s) 339
BaeGI GKGCMC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 95
BccI CCATC 2 cut(s) 149, 215
BcoDI GTCTC 1 cut(s) 445
BmeT110I CYCGRG 1 cut(s) 339
BmgT120I GGNCC 2 cut(s) 91, 92
BmiI GGNNCC 3 cut(s) 92, 93, 94
BpmI CTGGAG 1 cut(s) 316
BsaI GGTCTC 1 cut(s) 445
BsaJI CCNNGG 1 cut(s) 542
BseDI CCNNGG 1 cut(s) 542
BseGI GGATG 2 cut(s) 280, 576
BseSI GKGCMC 1 cut(s) 95
Bsh1236I CGCG 3 cut(s) 497, 555, 557
BshFI GGCC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 339
BsmAI GTCTC 1 cut(s) 445
BsnI GGCC 1 cut(s) 93
Bso31I GGTCTC 1 cut(s) 445
BsoBI CYCGRG 1 cut(s) 339
Bsp120I GGGCCC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 95
Bsp1407I TGTACA 1 cut(s) 457
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 2 cut(s) 553, 557
BspANI GGCC 1 cut(s) 93
BspFNI CGCG 3 cut(s) 497, 555, 557
BspLI GGNNCC 3 cut(s) 92, 93, 94
BspPI GGATC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 445
BsrGI TGTACA 1 cut(s) 457
BssECI CCNNGG 1 cut(s) 542
BssMI GATC 1 cut(s) 178
BssNAI GTATAC 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 542
Bst1107I GTATAC 1 cut(s) 32
Bst4CI ACNGT 2 cut(s) 66, 115
Bst6I CTCTTC 1 cut(s) 443
BstAUI TGTACA 1 cut(s) 457
BstDEI CTNAG 1 cut(s) 39
BstF5I GGATG 2 cut(s) 280, 576
BstFNI CGCG 3 cut(s) 497, 555, 557
BstHHI GCGC 1 cut(s) 557
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 1 cut(s) 178
BstSLI GKGCMC 1 cut(s) 95
BstUI CGCG 3 cut(s) 497, 555, 557
BstZ17I GTATAC 1 cut(s) 32
BsuRI GGCC 1 cut(s) 93
BtsCI GGATG 2 cut(s) 280, 576
CfoI GCGC 1 cut(s) 557
Cfr13I GGNCC 2 cut(s) 91, 92
Csp6I GTAC 2 cut(s) 458, 564
CviAII CATG 1 cut(s) 434
CviJI RGCY 5 cut(s) 93, 141, 287, 294, 338
CviKI_1 RGCY 5 cut(s) 93, 141, 287, 294, 338
CviQI GTAC 2 cut(s) 458, 564
DdeI CTNAG 1 cut(s) 39
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
DraI TTTAAA 1 cut(s) 523
Eam1104I CTCTTC 1 cut(s) 443
EarI CTCTTC 1 cut(s) 443
Eco130I CCWWGG 1 cut(s) 542
Eco24I GRGCYC 1 cut(s) 95
Eco31I GGTCTC 1 cut(s) 445
Eco88I CYCGRG 1 cut(s) 339
EcoO109I RGGNCCY 2 cut(s) 91, 92
EcoT14I CCWWGG 1 cut(s) 542
EcoT38I GRGCYC 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 542
FaeI CATG 1 cut(s) 437
FaiI YATR 5 cut(s) 32, 219, 252, 435, 440
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FatI CATG 1 cut(s) 433
FblI GTMKAC 1 cut(s) 31
FokI GGATG 2 cut(s) 287, 563
FriOI GRGCYC 1 cut(s) 95
GlaI GCGC 1 cut(s) 556
GsuI CTGGAG 1 cut(s) 316
HaeIII GGCC 1 cut(s) 93
HhaI GCGC 1 cut(s) 557
Hin1II CATG 1 cut(s) 437
Hin6I GCGC 1 cut(s) 555
HinP1I GCGC 1 cut(s) 555
HinfI GANTC 1 cut(s) 488
HphI GGTGA 1 cut(s) 571
Hpy166II GTNNAC 2 cut(s) 32, 460
Hpy188I TCNGA 2 cut(s) 332, 587
Hpy188III TCNNGA 2 cut(s) 49, 414
Hpy8I GTNNAC 2 cut(s) 32, 460
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 3 cut(s) 119, 265, 414
HpyCH4III ACNGT 2 cut(s) 66, 115
HpyCH4IV ACGT 1 cut(s) 566
HpyCH4V TGCA 3 cut(s) 75, 245, 429
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 566
Hsp92II CATG 1 cut(s) 437
HspAI GCGC 1 cut(s) 555
Kzo9I GATC 1 cut(s) 178
LpnPI CCDG 4 cut(s) 280, 320, 399, 468
MaeII ACGT 1 cut(s) 566
MaeIII GTNAC 1 cut(s) 66
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 4 cut(s) 139, 362, 429, 460
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 7 cut(s) 119, 354, 388, 409, 502, 570, 581
MnlI CCTC 3 cut(s) 102, 168, 291
MseI TTAA 6 cut(s) 14, 324, 357, 522, 534, 569
MspA1I CMGCKG 1 cut(s) 294
MvnI CGCG 3 cut(s) 497, 555, 557
NdeII GATC 1 cut(s) 178
NlaIII CATG 1 cut(s) 437
NlaIV GGNNCC 3 cut(s) 92, 93, 94
NmuCI GTSAC 1 cut(s) 66
PaeR7I CTCGAG 1 cut(s) 339
PfeI GAWTC 1 cut(s) 488
PshBI ATTAAT 1 cut(s) 357
PspN4I GGNNCC 3 cut(s) 92, 93, 94
PspOMI GGGCCC 1 cut(s) 91
PspPI GGNCC 2 cut(s) 91, 92
PspXI VCTCGAGB 1 cut(s) 339
PvuII CAGCTG 1 cut(s) 294
RsaI GTAC 2 cut(s) 459, 565
RsaNI GTAC 2 cut(s) 458, 564
SaqAI TTAA 6 cut(s) 14, 324, 357, 522, 534, 569
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 2 cut(s) 91, 92
SduI GDGCHC 1 cut(s) 95
SetI ASST 6 cut(s) 25, 40, 289, 296, 457, 569
Sfr274I CTCGAG 1 cut(s) 339
SlaI CTCGAG 1 cut(s) 339
SmlI CTYRAG 1 cut(s) 339
SmoI CTYRAG 1 cut(s) 339
Sse9I AATT 7 cut(s) 119, 354, 388, 409, 502, 570, 581
SsiI CCGC 2 cut(s) 553, 557
SspI AATATT 1 cut(s) 167
StyI CCWWGG 1 cut(s) 542
TaaI ACNGT 2 cut(s) 66, 115
TaiI ACGT 1 cut(s) 569
TaqI TCGA 2 cut(s) 150, 340
TasI AATT 7 cut(s) 119, 354, 388, 409, 502, 570, 581
TatI WGTACW 1 cut(s) 457
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 6 cut(s) 14, 324, 357, 522, 534, 569
Tru9I TTAA 6 cut(s) 14, 324, 357, 522, 534, 569
TseFI GTSAC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 375
TspGWI ACGGA 2 cut(s) 121, 481
VspI ATTAAT 1 cut(s) 357
XhoI CTCGAG 1 cut(s) 339
XmiI GTMKAC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.