FvH4_5g30470

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000210
Physical Location & Seq
Forward (+)
21333354 .. 21335408
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30470.t1

Sequence Viewer

Length: 948 bp
ATGACGAGGAAACCGATGATGAACAAGTGTAGGAAACCATCGTTTTTCAAGGTGCTGATTGGTGACTTCTCTAAGCGTCTGCTCATACCACCAGAGTTTACCAAGAACCTTGTTTGGAATGGGATATTTCCTCACAAATGTGCTCTTAGAGGTCCTAGCGGACTACTTTGTGCTGCGGAAGTGGAAAGCACAGAAAATGGCATGTTCTTCCACAATGGATGGGAATGCTTTGTGAAGGATCATCATTTAGAACTTGGGGATTTTTTGATCTTCAGATATGATGGTGAATCAAAGTTTAGTGTCACAATCTATGATAGAAGTGCATGTGAGAAAGATGTAGAGATAGCTAAGAGGAGAAGTGGCTCTTCTGTTTCTTTGAAGAATACCAGAAATCAAGCTCGAGTAAAAGTTGAAGTTCTTGATGACCTTGTAGCTGAAAGCTTCAAGAACATAAACAGTGAAGACGAAACAGTTGTTTCCGATGAAGAATGTTGCAATGATGTCAAGCTGGGAAAGAGACCTGCTAACGGTTACTTGGAAGAAACATCAGATGGATCATTCTTGTTCAAGTCTGAGAATTCATGTTTTCAAAGAATTTTAACCAAGCATTCAAAATATCACATTGGGTTTCCAAAAGAACTAGGTGTAGCTAAAGATCTTATGAATAAGACGACCATGAAACTTGAAGATCCAACTGGGAGATCATGGACTGTTGGTCTGTGTGTTTCTAAAAATTACAAACAAGACGGCAAGGTATATGAACGTATAGATGTGGGCAAAGGTTGGTCACAAGTTCGTGTTGCAAACAAGATTTCACCTGGGGACACAATTATTTTTGAGCTTGTCAAGCTAAAAATAATGAAAATTCATATTGTCAGAGCAGGAAGAGTGAGAGGCAAAGCATCTGCTGTTAAACTAGTTAATCCTAATGTCGCAAGTTCAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

316

Amino Acids

35.55

Weight (kDa)

9.21

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 15 - 106 1.3e-12 B3 DNA binding domain
B3 PF02362 210 - 283 3.2e-09 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 529
AciI CCGC 2 cut(s) 159, 176
AclWI GGATC 3 cut(s) 246, 562, 683
AcsI RAATTY 3 cut(s) 577, 594, 864
AcuI CTGAAG 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 527
AgsI TTSAA 9 cut(s) 49, 379, 413, 445, 568, 590, 612, 686, 942
AhdI GACNNNNNGTC 1 cut(s) 714
AhlI ACTAGT 1 cut(s) 916
AjnI CCWGG 1 cut(s) 817
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 8 cut(s) 347, 398, 434, 441, 508, 650, 841, 850
AluI AGCT 8 cut(s) 347, 398, 434, 441, 508, 650, 841, 850
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 1 cut(s) 511
AlwI GGATC 3 cut(s) 246, 562, 683
Ama87I CYCGRG 1 cut(s) 399
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 3 cut(s) 577, 594, 864
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 3 cut(s) 74, 296, 807
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 160
BccI CCATC 4 cut(s) 46, 213, 275, 545
BceAI ACGGC 1 cut(s) 763
BciT130I CCWGG 1 cut(s) 819
BcoDI GTCTC 1 cut(s) 511
BcuI ACTAGT 1 cut(s) 916
BfaI CTAG 4 cut(s) 156, 641, 917, 946
BfuAI ACCTGC 1 cut(s) 529
BglII AGATCT 1 cut(s) 655
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 819
Bme18I GGWCC 1 cut(s) 152
BmeRI GACNNNNNGTC 1 cut(s) 714
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 819
BmrI ACTGGG 1 cut(s) 705
BmsI GCATC 1 cut(s) 911
BmuI ACTGGG 1 cut(s) 705
BpiI GAAGAC 1 cut(s) 468
BsaI GGTCTC 1 cut(s) 511
BsaJI CCNNGG 1 cut(s) 818
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse1I ACTGG 1 cut(s) 700
Bse3DI GCAATG 1 cut(s) 502
BseBI CCWGG 1 cut(s) 819
BseDI CCNNGG 1 cut(s) 818
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 1 cut(s) 527
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 1 cut(s) 700
BseRI GAGGAG 1 cut(s) 367
BseXI GCAGC 1 cut(s) 160
BseYI CCCAGC 1 cut(s) 508
BsiHKAI GWGCWC 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 836
BslI CCNNNNNNNGG 1 cut(s) 527
BsmAI GTCTC 1 cut(s) 511
BsmFI GGGAC 1 cut(s) 836
BsmI GAATGC 2 cut(s) 230, 607
Bso31I GGTCTC 1 cut(s) 511
BsoBI CYCGRG 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 6 cut(s) 238, 267, 554, 655, 688, 701
BspACI CCGC 2 cut(s) 159, 176
BspCNI CTCAG 1 cut(s) 565
BspMI ACCTGC 1 cut(s) 529
BspPI GGATC 3 cut(s) 246, 562, 683
BspQI GCTCTTC 1 cut(s) 370
BspTNI GGTCTC 1 cut(s) 511
BsrDI GCAATG 1 cut(s) 502
BsrI ACTGG 1 cut(s) 700
BssECI CCNNGG 1 cut(s) 818
BssMI GATC 6 cut(s) 238, 267, 554, 655, 688, 701
Bst2UI CCWGG 1 cut(s) 819
Bst4CI ACNGT 4 cut(s) 458, 472, 530, 712
Bst6I CTCTTC 2 cut(s) 370, 880
BstDEI CTNAG 4 cut(s) 72, 146, 348, 573
BstF5I GGATG 1 cut(s) 224
BstKTI GATC 6 cut(s) 241, 270, 557, 658, 691, 704
BstMAI GTCTC 1 cut(s) 511
BstMBI GATC 6 cut(s) 238, 267, 554, 655, 688, 701
BstMWI GCNNNNNNNGC 1 cut(s) 847
BstNI CCWGG 1 cut(s) 819
BstNSI RCATGY 2 cut(s) 205, 327
BstSCI CCNGG 1 cut(s) 817
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 2 cut(s) 655, 688
BstYI RGATCY 2 cut(s) 655, 688
BtsCI GGATG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 463
BveI ACCTGC 1 cut(s) 529
Cfr13I GGNCC 1 cut(s) 152
CseI GACGC 1 cut(s) 65
CviAII CATG 5 cut(s) 202, 324, 582, 676, 705
CviJI RGCY 9 cut(s) 347, 363, 398, 434, 441, 508, 650, 841, 850
CviKI_1 RGCY 9 cut(s) 347, 363, 398, 434, 441, 508, 650, 841, 850
DdeI CTNAG 4 cut(s) 72, 146, 348, 573
DpnI GATC 6 cut(s) 240, 269, 556, 657, 690, 703
DpnII GATC 6 cut(s) 238, 267, 554, 655, 688, 701
DriI GACNNNNNGTC 1 cut(s) 714
Eam1104I CTCTTC 2 cut(s) 370, 880
Eam1105I GACNNNNNGTC 1 cut(s) 714
EarI CTCTTC 2 cut(s) 370, 880
Eco31I GGTCTC 1 cut(s) 511
Eco47I GGWCC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 256
Eco88I CYCGRG 1 cut(s) 399
EcoO109I RGGNCCY 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 577
EcoRII CCWGG 1 cut(s) 817
FaeI CATG 5 cut(s) 205, 327, 585, 679, 708
FalI AAGNNNNNCTT 2 cut(s) 349, 381
FaqI GGGAC 1 cut(s) 836
FatI CATG 5 cut(s) 201, 323, 581, 675, 704
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 4 cut(s) 156, 641, 917, 946
GluI GCNGC 1 cut(s) 174
GsaI CCCAGC 1 cut(s) 512
HgaI GACGC 1 cut(s) 65
Hin1II CATG 5 cut(s) 205, 327, 585, 679, 708
HindIII AAGCTT 1 cut(s) 439
HinfI GANTC 1 cut(s) 287
HphI GGTGA 3 cut(s) 74, 296, 807
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 5 cut(s) 275, 481, 550, 574, 878
Hpy188III TCNNGA 2 cut(s) 419, 445
Hpy8I GTNNAC 1 cut(s) 99
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 4 cut(s) 458, 472, 530, 712
HpyCH4IV ACGT 1 cut(s) 763
HpyCH4V TGCA 3 cut(s) 323, 495, 803
HpyF10VI GCNNNNNNNGC 1 cut(s) 847
HpyF3I CTNAG 4 cut(s) 72, 146, 348, 573
HpySE526I ACGT 1 cut(s) 763
Hsp92II CATG 5 cut(s) 205, 327, 585, 679, 708
Kzo9I GATC 6 cut(s) 238, 267, 554, 655, 688, 701
LguI GCTCTTC 1 cut(s) 370
LpnPI CCDG 8 cut(s) 105, 400, 494, 534, 681, 804, 831, 867
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 911
MaeI CTAG 4 cut(s) 156, 641, 917, 946
MaeII ACGT 1 cut(s) 763
MaeIII GTNAC 4 cut(s) 62, 301, 530, 786
MalI GATC 6 cut(s) 240, 269, 556, 657, 690, 703
MboI GATC 6 cut(s) 238, 267, 554, 655, 688, 701
MboII GAAGA 9 cut(s) 199, 262, 357, 391, 473, 497, 551, 698, 897
MflI RGATCY 2 cut(s) 655, 688
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 5 cut(s) 577, 594, 733, 828, 864
MmeI TCCRAC 1 cut(s) 716
MnlI CCTC 4 cut(s) 141, 143, 345, 887
MseI TTAA 3 cut(s) 599, 912, 921
MslI CAYNNNNRTG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 819
Mva1269I GAATGC 2 cut(s) 230, 607
MvaI CCWGG 1 cut(s) 819
MwoI GCNNNNNNNGC 1 cut(s) 847
NdeII GATC 6 cut(s) 238, 267, 554, 655, 688, 701
NlaIII CATG 5 cut(s) 205, 327, 585, 679, 708
NmuCI GTSAC 3 cut(s) 62, 301, 786
NspI RCATGY 2 cut(s) 205, 327
OliI CACNNNNGTG 1 cut(s) 138
PaeR7I CTCGAG 1 cut(s) 399
PciSI GCTCTTC 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PctI GAATGC 2 cut(s) 230, 607
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 1 cut(s) 175
PpuMI RGGWCCY 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 817
PspFI CCCAGC 1 cut(s) 508
PspGI CCWGG 1 cut(s) 817
PspPI GGNCC 1 cut(s) 152
PspPPI RGGWCCY 1 cut(s) 152
PspXI VCTCGAGB 1 cut(s) 399
PsuI RGATCY 2 cut(s) 655, 688
RseI CAYNNNNRTG 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 370
SaqAI TTAA 3 cut(s) 599, 912, 921
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 6 cut(s) 238, 267, 554, 655, 688, 701
Sau96I GGNCC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 819
SduI GDGCHC 1 cut(s) 145
SfaNI GCATC 1 cut(s) 911
Sfr274I CTCGAG 1 cut(s) 399
SinI GGWCC 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
SpeI ACTAGT 1 cut(s) 916
Sse9I AATT 5 cut(s) 577, 594, 733, 828, 864
SsiI CCGC 2 cut(s) 159, 176
SspMI CTAG 4 cut(s) 156, 641, 917, 946
StyD4I CCNGG 1 cut(s) 817
TaaI ACNGT 4 cut(s) 458, 472, 530, 712
TaiI ACGT 1 cut(s) 766
TaqI TCGA 1 cut(s) 400
TasI AATT 5 cut(s) 577, 594, 733, 828, 864
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 3 cut(s) 599, 912, 921
Tru9I TTAA 3 cut(s) 599, 912, 921
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 3 cut(s) 62, 301, 786
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 3 cut(s) 62, 301, 786
TspDTI ATGAA 8 cut(s) 35, 498, 570, 677, 692, 774, 857, 875
TspRI CASTG 1 cut(s) 463
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 3 cut(s) 577, 594, 864
XceI RCATGY 2 cut(s) 205, 327
XhoI CTCGAG 1 cut(s) 399
XspI CTAG 4 cut(s) 156, 641, 917, 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.