Rmu_sc0000986.1_g000010

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000986.1
OG0000210
Physical Location & Seq
Reverse (-)
43518 .. 43856
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000986.1_g000010.1.cds

Sequence Viewer

Length: 339 bp
atgctgatctttaaagtacgttataaattgccgaggattccaaagaaattagtcatggttaaaggacttacgagtaagaagactgagaagattcaagatcgcactgggaggtcatggctcgttaaacttcctctagaaaggtatgaatccaaagggtacagatctagttatgatcgctatcacatgggaagaggttggaaagattgtcgcaaagccaaccagatatatcgcatggggacaacctcattttttgagtttgtcaagaacagcatagtgcaacttcatatctccaagaattggcattctgtggtacttgatgctcccaacttcaaagcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

112

Amino Acids

13.36

Weight (kDa)

10.38

Isoelectric Point (pI)

17.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
AccB7I CCANNNNNTGG 1 cut(s) 297
AfaI GTAC 3 cut(s) 18, 158, 312
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 2 cut(s) 95, 331
BbsI GAAGAC 1 cut(s) 86
BfaI CTAG 2 cut(s) 134, 165
BglII AGATCT 1 cut(s) 161
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 307
BmuI ACTGGG 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 109
Bse8I GATNNNNATC 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 32
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 109
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 297
BsmFI GGGAC 1 cut(s) 250
BsmI GAATGC 1 cut(s) 301
Bsp143I GATC 4 cut(s) 6, 97, 161, 172
BspCNI CTCAG 1 cut(s) 76
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 4 cut(s) 6, 97, 161, 172
Bst6I CTCTTC 1 cut(s) 184
BstDEI CTNAG 1 cut(s) 84
BstKTI GATC 4 cut(s) 9, 100, 164, 175
BstMBI GATC 4 cut(s) 6, 97, 161, 172
BstV2I GAAGAC 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 102
Csp6I GTAC 3 cut(s) 17, 157, 311
CviAII CATG 4 cut(s) 55, 114, 184, 232
CviJI RGCY 2 cut(s) 118, 215
CviKI_1 RGCY 2 cut(s) 118, 215
CviQI GTAC 3 cut(s) 17, 157, 311
DdeI CTNAG 1 cut(s) 84
DpnI GATC 4 cut(s) 8, 99, 163, 174
DpnII GATC 4 cut(s) 6, 97, 161, 172
DraI TTTAAA 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
FaeI CATG 4 cut(s) 58, 117, 187, 235
FaqI GGGAC 1 cut(s) 250
FatI CATG 4 cut(s) 54, 113, 183, 231
FspBI CTAG 2 cut(s) 134, 165
Hin1II CATG 4 cut(s) 58, 117, 187, 235
HinfI GANTC 3 cut(s) 37, 91, 146
Hpy188III TCNNGA 3 cut(s) 95, 134, 262
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 277
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 4 cut(s) 58, 117, 187, 235
Kzo9I GATC 4 cut(s) 6, 97, 161, 172
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 2 cut(s) 90, 233
LweI GCATC 1 cut(s) 307
MaeI CTAG 2 cut(s) 134, 165
MaeII ACGT 1 cut(s) 19
MalI GATC 4 cut(s) 8, 99, 163, 174
MboI GATC 4 cut(s) 6, 97, 161, 172
MboII GAAGA 3 cut(s) 91, 100, 201
MflI RGATCY 1 cut(s) 161
MluCI AATT 3 cut(s) 26, 47, 295
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 5 cut(s) 27, 102, 141, 185, 253
MseI TTAA 3 cut(s) 12, 60, 123
Mva1269I GAATGC 1 cut(s) 301
NdeII GATC 4 cut(s) 6, 97, 161, 172
NlaIII CATG 4 cut(s) 58, 117, 187, 235
NmeAIII GCCGAG 1 cut(s) 57
PctI GAATGC 1 cut(s) 301
PfeI GAWTC 3 cut(s) 37, 91, 146
PflMI CCANNNNNTGG 1 cut(s) 297
PsiI TTATAA 1 cut(s) 24
PsuI RGATCY 1 cut(s) 161
RsaI GTAC 3 cut(s) 18, 158, 312
RsaNI GTAC 3 cut(s) 17, 157, 311
SaqAI TTAA 3 cut(s) 12, 60, 123
Sau3AI GATC 4 cut(s) 6, 97, 161, 172
SetI ASST 5 cut(s) 22, 113, 143, 196, 245
SfaNI GCATC 1 cut(s) 307
Sse9I AATT 3 cut(s) 26, 47, 295
SspMI CTAG 2 cut(s) 134, 165
TaiI ACGT 1 cut(s) 22
TasI AATT 3 cut(s) 26, 47, 295
TfiI GAWTC 3 cut(s) 37, 91, 146
Tru1I TTAA 3 cut(s) 12, 60, 123
Tru9I TTAA 3 cut(s) 12, 60, 123
TscAI CASTG 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 159, 272
TspRI CASTG 1 cut(s) 109
Van91I CCANNNNNTGG 1 cut(s) 297
XbaI TCTAGA 1 cut(s) 133
XspI CTAG 2 cut(s) 134, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.