Prupe.4G178200_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000210
Physical Location & Seq
Forward (+)
10583724 .. 10585592
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G178200.1

Sequence Viewer

Length: 885 bp
ATGGCTAGGAAGCTAAGTAAGCCTTCACTAAAGAAACAATCATTTTTCAAGGTCCTGCTTGGCGACTTCTATCAGCATCTGCGTTTACCACCTGTGTTTATCGAGAAGTTAGATGGACAATCACTTCCCAAATGTGCTCTTAGAAGCCCTAATGGGAAACTGTGGACTGTGGAATTGGAAGAGAGGGAGAATGGCTTTTTCTTCCATGATGGCTGGCAGGGTTTTGTGAGGGATCATTGTTTAGAAATCGGAAATTTTTTGGTTTTCGACTATGATGGTGGCTCCAAGTTTGATGTCACAATTTATGAACCAACTGGCTGTGAAAAGGATGTAGAAGCAGCCAAGAGGAGAAGTGGTAATCCTGTTTCCTCTGTAAAAGATGAAATTGTTGACATTGAGACTGAAAATTACAACAAAGAAAGTAAAAGCCAAACCATCAATGCTGAAAGAACAAGTCGCAAGTATATCATGTCTGGAAAGAGACCTGCAAATGACTCTGTAGAAGAAACATCAACTGGATCCATCTTGTTCAAATCGGAGAATTCATGTTTTATAAAAATTCTGACGAAAATACTATATCCAGTGACAATTCCAAAGGAACTAGCCATAGCTGAAGGTCTTGTGAGGAAGAAGACTGTAAAGCTTCATGATCCAGCTGGGAGATCATGGATTGTTAAACTTAGAGTCCACAGGTCACCGTATCTTCGTTTCGAAATGACGAAAGGTTGGGCAAAATGTTGTAGAGCAAACCAGATTTCACAAGGGGACACCATCGTTTTTGAGTTTGTGAAACCAAGTGTAATGCAAATTCATATCTACAGAGGAGGAAGAGTGGGAGGCAGTGGGTGTTCTGTTGTACTCGTTAACCCCGGCCTGAAAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

295

Amino Acids

33.26

Weight (kDa)

9.32

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 554
Acc36I ACCTGC 1 cut(s) 493
AclWI GGATC 4 cut(s) 240, 513, 526, 644
AcsI RAATTY 4 cut(s) 253, 541, 558, 807
AcuI CTGAAG 1 cut(s) 633
AfaI GTAC 1 cut(s) 858
AgsI TTSAA 2 cut(s) 49, 532
AluBI AGCT 4 cut(s) 13, 611, 643, 656
AluI AGCT 4 cut(s) 13, 611, 643, 656
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 2 cut(s) 392, 475
AlwI GGATC 4 cut(s) 240, 513, 526, 644
AlwNI CAGNNNCTG 1 cut(s) 79
AoxI GGCC 1 cut(s) 871
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 4 cut(s) 253, 541, 558, 807
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 870
AsuHPI GGTGA 1 cut(s) 687
AsuII TTCGAA 1 cut(s) 711
AvaII GGWCC 1 cut(s) 52
BamHI GGATCC 1 cut(s) 518
BbsI GAAGAC 1 cut(s) 638
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 350
BccI CCATC 6 cut(s) 107, 203, 269, 443, 530, 779
BcnI CCSGG 1 cut(s) 870
BcoDI GTCTC 2 cut(s) 392, 475
BfaI CTAG 3 cut(s) 6, 602, 883
BfmI CTRYAG 2 cut(s) 498, 817
BfuAI ACCTGC 1 cut(s) 493
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 1 cut(s) 870
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 2 cut(s) 283, 520
BmrFI CCNGG 1 cut(s) 870
BmsI GCATC 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 638
Bpu14I TTCGAA 1 cut(s) 711
BpuMI CCSGG 1 cut(s) 870
BsaI GGTCTC 1 cut(s) 475
BsaJI CCNNGG 1 cut(s) 868
BsaXI ACNNNNNCTCC 4 cut(s) 340, 370, 816, 846
Bse1I ACTGG 3 cut(s) 319, 520, 581
BseDI CCNNGG 1 cut(s) 868
BseGI GGATG 1 cut(s) 334
BseNI ACTGG 3 cut(s) 319, 520, 581
BseRI GAGGAG 2 cut(s) 361, 837
BseXI GCAGC 1 cut(s) 350
BseYI CCCAGC 1 cut(s) 656
BshFI GGCC 1 cut(s) 873
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 870
BslFI GGGAC 1 cut(s) 779
BsmAI GTCTC 2 cut(s) 392, 475
BsmFI GGGAC 1 cut(s) 779
BsnI GGCC 1 cut(s) 873
Bso31I GGTCTC 1 cut(s) 475
Bsp119I TTCGAA 1 cut(s) 711
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 4 cut(s) 232, 518, 649, 662
BspANI GGCC 1 cut(s) 873
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 2 cut(s) 283, 520
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 4 cut(s) 240, 513, 526, 644
BspT104I TTCGAA 1 cut(s) 711
BspTNI GGTCTC 1 cut(s) 475
BsrI ACTGG 3 cut(s) 319, 520, 581
BssECI CCNNGG 1 cut(s) 868
BssMI GATC 4 cut(s) 232, 518, 649, 662
Bst4CI ACNGT 4 cut(s) 162, 169, 637, 699
Bst6I CTCTTC 2 cut(s) 174, 823
BstBI TTCGAA 1 cut(s) 711
BstC8I GCNNGC 1 cut(s) 215
BstDEI CTNAG 3 cut(s) 14, 140, 680
BstEII GGTNACC 1 cut(s) 693
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 4 cut(s) 235, 521, 652, 665
BstMAI GTCTC 2 cut(s) 392, 475
BstMBI GATC 4 cut(s) 232, 518, 649, 662
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstPI GGTNACC 1 cut(s) 693
BstSCI CCNGG 1 cut(s) 868
BstSFI CTRYAG 2 cut(s) 498, 817
BstV1I GCAGC 1 cut(s) 350
BstV2I GAAGAC 1 cut(s) 638
BstX2I RGATCY 1 cut(s) 518
BstYI RGATCY 1 cut(s) 518
BsuRI GGCC 1 cut(s) 873
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 1 cut(s) 847
BtsIMutI CAGTG 2 cut(s) 588, 847
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 1 cut(s) 215
CaiI CAGNNNCTG 1 cut(s) 79
CciI TCATGA 1 cut(s) 646
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 857
CviAII CATG 5 cut(s) 206, 469, 546, 647, 666
CviQI GTAC 1 cut(s) 857
DdeI CTNAG 3 cut(s) 14, 140, 680
DpnI GATC 4 cut(s) 234, 520, 651, 664
DpnII GATC 4 cut(s) 232, 518, 649, 662
Eam1104I CTCTTC 2 cut(s) 174, 823
EarI CTCTTC 2 cut(s) 174, 823
Eco31I GGTCTC 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 633
Eco91I GGTNACC 1 cut(s) 693
EcoO109I RGGNCCY 1 cut(s) 52
EcoO65I GGTNACC 1 cut(s) 693
EcoRI GAATTC 1 cut(s) 541
FaeI CATG 5 cut(s) 209, 472, 549, 650, 669
FalI AAGNNNNNCTT 2 cut(s) 7, 39
FaqI GGGAC 1 cut(s) 779
FatI CATG 5 cut(s) 205, 468, 545, 646, 665
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 3 cut(s) 6, 602, 883
GluI GCNGC 1 cut(s) 339
GsaI CCCAGC 1 cut(s) 660
HaeIII GGCC 1 cut(s) 873
HapII CCGG 1 cut(s) 870
Hin1II CATG 5 cut(s) 209, 472, 549, 650, 669
HincII GTYRAC 2 cut(s) 391, 865
HindII GTYRAC 2 cut(s) 391, 865
HindIII AAGCTT 1 cut(s) 641
HinfI GANTC 2 cut(s) 494, 684
HpaI GTTAAC 1 cut(s) 865
HpaII CCGG 1 cut(s) 870
HphI GGTGA 1 cut(s) 687
Hpy166II GTNNAC 5 cut(s) 86, 165, 391, 688, 865
Hpy188I TCNGA 3 cut(s) 251, 538, 564
Hpy188III TCNNGA 3 cut(s) 103, 474, 647
Hpy8I GTNNAC 5 cut(s) 86, 165, 391, 688, 865
HpyAV CCTTC 2 cut(s) 33, 608
HpyCH4III ACNGT 4 cut(s) 162, 169, 637, 699
HpyCH4V TGCA 2 cut(s) 488, 805
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 3 cut(s) 14, 140, 680
Hsp92II CATG 5 cut(s) 209, 472, 549, 650, 669
KspAI GTTAAC 1 cut(s) 865
Kzo9I GATC 4 cut(s) 232, 518, 649, 662
LmnI GCTCC 1 cut(s) 287
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 1 cut(s) 85
MaeI CTAG 3 cut(s) 6, 602, 883
MaeIII GTNAC 3 cut(s) 295, 583, 693
MalI GATC 4 cut(s) 234, 520, 651, 664
MboI GATC 4 cut(s) 232, 518, 649, 662
MboII GAAGA 7 cut(s) 191, 193, 515, 640, 643, 695, 840
MflI RGATCY 1 cut(s) 518
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 9 cut(s) 173, 253, 300, 384, 406, 541, 558, 588, 807
MlyI GAGTC 2 cut(s) 488, 693
MnlI CCTC 8 cut(s) 177, 222, 339, 379, 618, 815, 818, 830
MseI TTAA 2 cut(s) 675, 864
MspA1I CMGCKG 1 cut(s) 656
MspI CCGG 1 cut(s) 870
MspR9I CCNGG 1 cut(s) 870
MwoI GCNNNNNNNGC 1 cut(s) 19
NciI CCSGG 1 cut(s) 870
NdeII GATC 4 cut(s) 232, 518, 649, 662
NlaIII CATG 5 cut(s) 209, 472, 549, 650, 669
NlaIV GGNNCC 2 cut(s) 283, 520
NmuCI GTSAC 3 cut(s) 295, 583, 693
NspV TTCGAA 1 cut(s) 711
PagI TCATGA 1 cut(s) 646
PkrI GCNGC 1 cut(s) 340
PleI GAGTC 2 cut(s) 488, 692
PpsI GAGTC 2 cut(s) 488, 692
PpuMI RGGWCCY 1 cut(s) 52
PsiI TTATAA 1 cut(s) 554
Psp5II RGGWCCY 1 cut(s) 52
PspEI GGTNACC 1 cut(s) 693
PspFI CCCAGC 1 cut(s) 656
PspN4I GGNNCC 2 cut(s) 283, 520
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
PstNI CAGNNNCTG 1 cut(s) 79
PsuI RGATCY 1 cut(s) 518
PvuII CAGCTG 1 cut(s) 656
RsaI GTAC 1 cut(s) 858
RsaNI GTAC 1 cut(s) 857
SaqAI TTAA 2 cut(s) 675, 864
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 4 cut(s) 232, 518, 649, 662
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 2 cut(s) 488, 693
ScrFI CCNGG 1 cut(s) 870
SduI GDGCHC 1 cut(s) 139
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 2 cut(s) 498, 817
SfuI TTCGAA 1 cut(s) 711
SinI GGWCC 1 cut(s) 52
Sse9I AATT 9 cut(s) 173, 253, 300, 384, 406, 541, 558, 588, 807
SspMI CTAG 3 cut(s) 6, 602, 883
StyD4I CCNGG 1 cut(s) 868
TaaI ACNGT 4 cut(s) 162, 169, 637, 699
TaqI TCGA 3 cut(s) 102, 267, 711
TasI AATT 9 cut(s) 173, 253, 300, 384, 406, 541, 558, 588, 807
TatI WGTACW 1 cut(s) 856
Tru1I TTAA 2 cut(s) 675, 864
Tru9I TTAA 2 cut(s) 675, 864
TscAI CASTG 2 cut(s) 588, 847
TseFI GTSAC 3 cut(s) 295, 583, 693
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 3 cut(s) 295, 583, 693
TspDTI ATGAA 5 cut(s) 321, 396, 534, 635, 800
TspRI CASTG 2 cut(s) 588, 847
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 4 cut(s) 253, 541, 558, 807
XspI CTAG 3 cut(s) 6, 602, 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.