Rh6CG385400

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000210
Physical Location & Seq
Reverse (-)
57163007 .. 57165143
2137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG385400.1

Sequence Viewer

Length: 771 bp
ATGGCTAGGAAGACTGAGCATCCAGCAAGAAGAGAAGCATTTTTCAAGGCCCTTATGGGTGATTTTTCTCAGCATCTGCGTATACCATCAGCGTTTATCAAGAACTTGAACAGACGCTCACTGCACATATGTCGTCTTAAAGGCCCTAGTGGACAATGTTGGGTTGTGGAATTGGAAAAGAGAGGCAATCGATTGTTTTTCCATAAGGGTTGGGAGGAATTTGTGAAGCATCATCCTCTAGAAGTTGGGGATTTTCTGATTTTCAGTTGTGATGGTGTGTCGATGTTCGATGTGACAATATATGGCAAAACTTTCTGTGAGAAGAATGTAACAGCAGCCAAGAGGAGAAGTGACAGTAATGGTATTGCTGCCAAAAGAAGTGGTAAGTTGCCAAGGAGAAGTGACAGTCATGCTGACAAAAGAAGTGCAGTTGATGATGTAGAAGAAACTTCTCTTCGACCCATTCCATTCCAATCAAAGAATTCTTTTATCTGTAGAGTTTTGACGGCACGTACATTGTATGAAGTGTATATTCCGACGGAAGTAGTCATAGCGGAAGGTTTAAAGGCTGGGATGGCCATAAAGATTCAAGATACATTTGGGATGTCATGGAATCTTAGACTCCGTGCTAACCATGATCGTGTGCTGATGAGGTCGGGCTTGTCAAATATATGCAAAGCAAACAAAACTTCACATGGGGACACTGTGATCTTTGAGTTTGTCAAGCCAAGAGTAGTGCAACTTCATATTATCAGAGCAGGAGCTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

256

Amino Acids

29.16

Weight (kDa)

9.92

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 14 - 97 1.3e-14 B3 DNA binding domain
B3 PF02362 176 - 250 1.3e-09 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 82
AciI CCGC 1 cut(s) 554
AcoI YGGCCR 1 cut(s) 576
AcsI RAATTY 2 cut(s) 218, 481
AfaI GTAC 1 cut(s) 514
AgsI TTSAA 3 cut(s) 46, 109, 590
AluBI AGCT 1 cut(s) 764
AluI AGCT 1 cut(s) 764
AlwNI CAGNNNCTG 1 cut(s) 76
AoxI GGCC 3 cut(s) 48, 142, 576
ApeKI GCWGC 2 cut(s) 335, 368
ApoI RAATTY 2 cut(s) 218, 481
AspS9I GGNCC 2 cut(s) 49, 143
AsuHPI GGTGA 1 cut(s) 71
BalI TGGCCA 1 cut(s) 578
BarI GAAGNNNNNNTAC 2 cut(s) 726, 758
BbsI GAAGAC 1 cut(s) 17
BbvI GCAGC 2 cut(s) 347, 355
BccI CCATC 3 cut(s) 94, 266, 568
BceAI ACGGC 1 cut(s) 522
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BfaI CTAG 4 cut(s) 6, 147, 239, 769
BfmI CTRYAG 1 cut(s) 493
BisI GCNGC 2 cut(s) 336, 369
BlsI GCNGC 2 cut(s) 337, 370
BmgT120I GGNCC 2 cut(s) 49, 143
BmsI GCATC 3 cut(s) 28, 82, 238
BpiI GAAGAC 1 cut(s) 17
Bsa29I ATCGAT 1 cut(s) 190
BsaAI YACGTR 1 cut(s) 512
BsaJI CCNNGG 1 cut(s) 392
BseCI ATCGAT 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 392
BseGI GGATG 4 cut(s) 19, 232, 579, 609
BseMII CTCAG 2 cut(s) 6, 83
BseRI GAGGAG 1 cut(s) 358
BseXI GCAGC 2 cut(s) 347, 355
BseYI CCCAGC 1 cut(s) 569
BsgI GTGCAG 2 cut(s) 107, 447
BshFI GGCC 3 cut(s) 50, 144, 578
BshVI ATCGAT 1 cut(s) 190
BslFI GGGAC 1 cut(s) 713
BsmFI GGGAC 1 cut(s) 713
BsnI GGCC 3 cut(s) 50, 144, 578
Bsp143I GATC 2 cut(s) 637, 708
BspACI CCGC 1 cut(s) 554
BspANI GGCC 3 cut(s) 50, 144, 578
BspCNI CTCAG 2 cut(s) 7, 82
BspDI ATCGAT 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 392
BssMI GATC 2 cut(s) 637, 708
BssNAI GTATAC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 392
Bst1107I GTATAC 1 cut(s) 83
Bst4CI ACNGT 3 cut(s) 356, 407, 706
Bst6I CTCTTC 2 cut(s) 25, 459
BstBAI YACGTR 1 cut(s) 512
BstDEI CTNAG 3 cut(s) 15, 69, 617
BstF5I GGATG 4 cut(s) 19, 232, 579, 609
BstKTI GATC 2 cut(s) 640, 711
BstMBI GATC 2 cut(s) 637, 708
BstMWI GCNNNNNNNGC 1 cut(s) 575
BstSFI CTRYAG 1 cut(s) 493
BstV1I GCAGC 2 cut(s) 347, 355
BstV2I GAAGAC 1 cut(s) 17
BstZ17I GTATAC 1 cut(s) 83
Bsu15I ATCGAT 1 cut(s) 190
BsuRI GGCC 3 cut(s) 50, 144, 578
BsuTUI ATCGAT 1 cut(s) 190
BtsCI GGATG 4 cut(s) 19, 232, 579, 609
BtsI GCAGTG 1 cut(s) 119
BtsIMutI CAGTG 2 cut(s) 119, 702
CaiI CAGNNNCTG 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 49, 143
ClaI ATCGAT 1 cut(s) 190
CseI GACGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 513
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 4 cut(s) 410, 609, 635, 695
CviJI RGCY 9 cut(s) 5, 50, 144, 338, 569, 578, 660, 727, 764
CviKI_1 RGCY 9 cut(s) 5, 50, 144, 338, 569, 578, 660, 727, 764
CviQI GTAC 1 cut(s) 513
DdeI CTNAG 3 cut(s) 15, 69, 617
DpnI GATC 2 cut(s) 639, 710
DpnII GATC 2 cut(s) 637, 708
DraI TTTAAA 1 cut(s) 564
EaeI YGGCCR 1 cut(s) 576
Eam1104I CTCTTC 2 cut(s) 25, 459
EarI CTCTTC 2 cut(s) 25, 459
Eco130I CCWWGG 1 cut(s) 392
EcoO109I RGGNCCY 2 cut(s) 49, 143
EcoRI GAATTC 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 392
ErhI CCWWGG 1 cut(s) 392
FaeI CATG 4 cut(s) 413, 612, 638, 698
FaqI GGGAC 1 cut(s) 713
FatI CATG 4 cut(s) 409, 608, 634, 694
FauNDI CATATG 1 cut(s) 128
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 336, 369
FokI GGATG 4 cut(s) 6, 219, 586, 616
Fsp4HI GCNGC 2 cut(s) 336, 369
FspBI CTAG 4 cut(s) 6, 147, 239, 769
GluI GCNGC 2 cut(s) 336, 369
GsaI CCCAGC 1 cut(s) 573
HaeIII GGCC 3 cut(s) 50, 144, 578
HgaI GACGC 1 cut(s) 123
Hin1II CATG 4 cut(s) 413, 612, 638, 698
HinfI GANTC 3 cut(s) 586, 613, 621
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 83, 152
Hpy188I TCNGA 3 cut(s) 258, 537, 755
Hpy188III TCNNGA 3 cut(s) 100, 239, 590
Hpy8I GTNNAC 2 cut(s) 83, 152
Hpy99I CGWCG 1 cut(s) 541
HpyAV CCTTC 1 cut(s) 551
HpyCH4III ACNGT 3 cut(s) 356, 407, 706
HpyCH4IV ACGT 1 cut(s) 511
HpyCH4V TGCA 4 cut(s) 124, 428, 675, 739
HpyF10VI GCNNNNNNNGC 1 cut(s) 575
HpyF3I CTNAG 3 cut(s) 15, 69, 617
HpySE526I ACGT 1 cut(s) 511
Hsp92II CATG 4 cut(s) 413, 612, 638, 698
Kzo9I GATC 2 cut(s) 637, 708
LmnI GCTCC 1 cut(s) 761
LpnPI CCDG 3 cut(s) 36, 555, 744
Lsp1109I GCAGC 2 cut(s) 347, 355
LweI GCATC 3 cut(s) 28, 82, 238
MaeI CTAG 4 cut(s) 6, 147, 239, 769
MaeII ACGT 1 cut(s) 511
MaeIII GTNAC 4 cut(s) 292, 328, 350, 401
MalI GATC 2 cut(s) 639, 710
MboI GATC 2 cut(s) 637, 708
MboII GAAGA 5 cut(s) 22, 42, 334, 446, 455
MlsI TGGCCA 1 cut(s) 578
MluCI AATT 3 cut(s) 170, 218, 481
MluNI TGGCCA 1 cut(s) 578
MlyI GAGTC 1 cut(s) 615
MmeI TCCRAC 1 cut(s) 560
MnlI CCTC 5 cut(s) 176, 208, 246, 336, 645
Mox20I TGGCCA 1 cut(s) 578
MscI TGGCCA 1 cut(s) 578
MseI TTAA 2 cut(s) 138, 563
MslI CAYNNNNRTG 1 cut(s) 639
Msp20I TGGCCA 1 cut(s) 578
MwoI GCNNNNNNNGC 1 cut(s) 575
NdeI CATATG 1 cut(s) 128
NdeII GATC 2 cut(s) 637, 708
NlaIII CATG 4 cut(s) 413, 612, 638, 698
NmuCI GTSAC 3 cut(s) 292, 350, 401
PfeI GAWTC 2 cut(s) 586, 613
PkrI GCNGC 2 cut(s) 337, 370
PleI GAGTC 1 cut(s) 615
PpsI GAGTC 1 cut(s) 615
Ppu21I YACGTR 1 cut(s) 512
PspFI CCCAGC 1 cut(s) 569
PspPI GGNCC 2 cut(s) 49, 143
PstNI CAGNNNCTG 1 cut(s) 76
RsaI GTAC 1 cut(s) 514
RsaNI GTAC 1 cut(s) 513
RseI CAYNNNNRTG 1 cut(s) 639
SaqAI TTAA 2 cut(s) 138, 563
SatI GCNGC 2 cut(s) 336, 369
Sau3AI GATC 2 cut(s) 637, 708
Sau96I GGNCC 2 cut(s) 49, 143
SchI GAGTC 1 cut(s) 615
SetI ASST 4 cut(s) 514, 562, 656, 766
SfaNI GCATC 3 cut(s) 28, 82, 238
SfcI CTRYAG 1 cut(s) 493
SmiMI CAYNNNNRTG 1 cut(s) 639
Sse9I AATT 3 cut(s) 170, 218, 481
SsiI CCGC 1 cut(s) 554
SspMI CTAG 4 cut(s) 6, 147, 239, 769
StyI CCWWGG 1 cut(s) 392
TaaI ACNGT 3 cut(s) 356, 407, 706
TaiI ACGT 1 cut(s) 514
TaqI TCGA 4 cut(s) 190, 281, 288, 457
TasI AATT 3 cut(s) 170, 218, 481
TfiI GAWTC 2 cut(s) 586, 613
Tru1I TTAA 2 cut(s) 138, 563
Tru9I TTAA 2 cut(s) 138, 563
TscAI CASTG 2 cut(s) 126, 709
TseFI GTSAC 3 cut(s) 292, 350, 401
TseI GCWGC 2 cut(s) 335, 368
Tsp45I GTSAC 3 cut(s) 292, 350, 401
TspDTI ATGAA 2 cut(s) 537, 734
TspGWI ACGGA 2 cut(s) 554, 614
TspRI CASTG 2 cut(s) 126, 709
XapI RAATTY 2 cut(s) 218, 481
XbaI TCTAGA 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 82
XspI CTAG 4 cut(s) 6, 147, 239, 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.