Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000210

Physical Location & Seq

Genomic Coordinates Forward (+)

12899276 .. 12901116

Gene Structure 1841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGTAGGAAACCAACTAAGCAACCATCCTTTTTCAAGGTCCTGCTTGATGACTTCGCTAATCATCTGCGTATACCACATAAGTTTACCAGGTACCATATTCGACCATCACTTGGCAAATGTGTTCTTAGAGGCCCTTGTGGAAAAAGAAGTGTGGAGCTGGAAAGGAGAAAGAATGGCTTGTTCTTCCACAGTCATGGTTGGCATAGCTTTGTGAAGGATCATCTTTTACAATTTGGCGACTTTCTGGTTTTCCAATATGATGGTAAATCAAAGTTTAAGGTTAAAGTATATGATCGAACATGTTGTGAGATAGATGTAGAAGTGCCCAAGAGGAGAAATGGCCTTCCTACTGCTCCCTCAGTGAATGAAGGCTACCAATTAGCTTGGGTAAAAGATGAAATTCTTGATGGCCTGGAAACCGAAAACTGCAATAGTGACACTGAAAATGCTGACAAGAGAAGGCGAAATAATTATGGAAGGACGCCAAAGGTTGAGGATGGTAAAGAAACATCGACTAGACCCATCATCTTCAAATCGGAGTATTCATGTTTTCAAGCAACTTTGAAGGGAAGGTGTTCACGATATAGGATGGCTATTCCAAAGGATCTAGTCGTGTCCAAAGGGCTTAAGAGTAAGAATACTGTAGAAATTGAAGACTCAACTGGGAGATTGTGGCCTGCGAAGCTTGTCAAAGGGAACTATGTGTCCATGTCAACAGGTTGGGGAGAATGTTCTAAAGCCAACAACATTGTTGTTGGGGACACCGTTGTTTTTGAGTTTGTTCAGCAAACTGTAATGCGCCTTCATGTTTTTAAAAAAGGTCTGGGAACAAGAGGAGGAAATAATGTCTATTTCTGTGGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

290

Amino Acids

33.03

Weight (kDa)

9.61

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	11 - 100	3.6e-13	B3 DNA binding domain
B3	PF02362	194 - 274	6.4e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66980
fragaria_vesca	FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica	MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica	Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis	pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis	RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata	RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora	Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii	Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa	Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha	Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana	Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	93
AccB7I	CCANNNNNTGG	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	73
AclWI	GGATC	2 cut(s)	228, 615
AcsI	RAATTY	1 cut(s)	402
AcyI	GRCGYC	1 cut(s)	485
AfaI	GTAC	2 cut(s)	95, 865
AfiI	CCNNNNNNNGG	1 cut(s)	113
AflII	CTTAAG	1 cut(s)	629
AflIII	ACRYGT	1 cut(s)	302
AgsI	TTSAA	5 cut(s)	37, 535, 557, 568, 656
AjnI	CCWGG	2 cut(s)	89, 414
AloI	GAACNNNNNNTCC	2 cut(s)	692, 724
AluBI	AGCT	4 cut(s)	160, 210, 386, 688
AluI	AGCT	4 cut(s)	160, 210, 386, 688
AlwI	GGATC	2 cut(s)	228, 615
AoxI	GGCC	4 cut(s)	133, 343, 412, 677
ApoI	RAATTY	1 cut(s)	402
Asp700I	GAANNNNTTC	1 cut(s)	577
Asp718I	GGTACC	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	804
AspS9I	GGNCC	2 cut(s)	40, 134
AvaII	GGWCC	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	93
BarI	GAAGNNNNNNTAC	2 cut(s)	789, 821
BbsI	GAAGAC	1 cut(s)	663
BccI	CCATC	7 cut(s)	34, 115, 257, 404, 494, 533, 586
BciT130I	CCWGG	2 cut(s)	91, 416
BfaI	CTAG	2 cut(s)	519, 611
BfmI	CTRYAG	1 cut(s)	645
BfrI	CTTAAG	1 cut(s)	629
Bme1390I	CCNGG	2 cut(s)	91, 416
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	40, 134
BmiI	GGNNCC	1 cut(s)	95
BmrFI	CCNGG	2 cut(s)	91, 416
BmrI	ACTGGG	1 cut(s)	675
BmuI	ACTGGG	1 cut(s)	675
BpiI	GAAGAC	1 cut(s)	663
BsaHI	GRCGYC	1 cut(s)	485
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	670
BseBI	CCWGG	2 cut(s)	91, 416
BseGI	GGATG	3 cut(s)	26, 505, 597
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	670
BseRI	GAGGAG	2 cut(s)	349, 852
BseSI	GKGCMC	1 cut(s)	330
BshFI	GGCC	4 cut(s)	135, 345, 414, 679
BshNI	GGYRCC	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	776
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	776
BsnI	GGCC	4 cut(s)	135, 345, 414, 679
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	220, 295, 607
BspANI	GGCC	4 cut(s)	135, 345, 414, 679
BspCNI	CTCAG	1 cut(s)	374
BspLI	GGNNCC	1 cut(s)	95
BspPI	GGATC	2 cut(s)	228, 615
BspT107I	GGYRCC	1 cut(s)	93
BspTI	CTTAAG	1 cut(s)	629
BsrI	ACTGG	1 cut(s)	670
BssMI	GATC	3 cut(s)	220, 295, 607
BssNAI	GTATAC	1 cut(s)	74
BssNI	GRCGYC	1 cut(s)	485
Bst1107I	GTATAC	1 cut(s)	74
Bst2UI	CCWGG	2 cut(s)	91, 416
Bst4CI	ACNGT	4 cut(s)	194, 646, 769, 796
BstACI	GRCGYC	1 cut(s)	485
BstAFI	CTTAAG	1 cut(s)	629
BstC8I	GCNNGC	1 cut(s)	681
BstDEI	CTNAG	3 cut(s)	18, 128, 361
BstF5I	GGATG	3 cut(s)	26, 505, 597
BstHHI	GCGC	1 cut(s)	804
BstKTI	GATC	3 cut(s)	223, 298, 610
BstMBI	GATC	3 cut(s)	220, 295, 607
BstMWI	GCNNNNNNNGC	1 cut(s)	685
BstNI	CCWGG	2 cut(s)	91, 416
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	89, 414
BstSFI	CTRYAG	1 cut(s)	645
BstSLI	GKGCMC	1 cut(s)	330
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	1 cut(s)	607
BstXI	CCANNNNNNTGG	2 cut(s)	197, 263
BstYI	RGATCY	1 cut(s)	607
BstZ17I	GTATAC	1 cut(s)	74
BsuRI	GGCC	4 cut(s)	135, 345, 414, 679
BtsCI	GGATG	3 cut(s)	26, 505, 597
BtsIMutI	CAGTG	2 cut(s)	369, 441
Cac8I	GCNNGC	1 cut(s)	681
CfoI	GCGC	1 cut(s)	804
Cfr13I	GGNCC	2 cut(s)	40, 134
CseI	GACGC	1 cut(s)	493
CsiI	ACCWGGT	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	94, 864
CviAII	CATG	5 cut(s)	197, 303, 549, 712, 809
CviQI	GTAC	2 cut(s)	94, 864
DdeI	CTNAG	3 cut(s)	18, 128, 361
DpnI	GATC	3 cut(s)	222, 297, 609
DpnII	GATC	3 cut(s)	220, 295, 607
DraI	TTTAAA	1 cut(s)	817
Eco47I	GGWCC	1 cut(s)	40
EcoO109I	RGGNCCY	2 cut(s)	40, 134
EcoRII	CCWGG	2 cut(s)	89, 414
FaeI	CATG	5 cut(s)	200, 306, 552, 715, 812
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	1 cut(s)	776
FatI	CATG	5 cut(s)	196, 302, 548, 711, 808
FblI	GTMKAC	1 cut(s)	73
FokI	GGATG	3 cut(s)	13, 512, 604
FspBI	CTAG	2 cut(s)	519, 611
GlaI	GCGC	1 cut(s)	803
HaeIII	GGCC	4 cut(s)	135, 345, 414, 679
HgaI	GACGC	1 cut(s)	493
HhaI	GCGC	1 cut(s)	804
Hin1I	GRCGYC	1 cut(s)	485
Hin1II	CATG	5 cut(s)	200, 306, 552, 715, 812
Hin6I	GCGC	1 cut(s)	802
HinP1I	GCGC	1 cut(s)	802
HincII	GTYRAC	1 cut(s)	717
HindII	GTYRAC	1 cut(s)	717
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	1 cut(s)	659
Hpy166II	GTNNAC	4 cut(s)	74, 87, 581, 717
Hpy188I	TCNGA	1 cut(s)	541
Hpy188III	TCNNGA	2 cut(s)	407, 582
Hpy8I	GTNNAC	4 cut(s)	74, 87, 581, 717
HpyAV	CCTTC	8 cut(s)	211, 356, 365, 456, 474, 562, 567, 815
HpyCH4III	ACNGT	4 cut(s)	194, 646, 769, 796
HpyCH4V	TGCA	1 cut(s)	432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	685
HpyF3I	CTNAG	3 cut(s)	18, 128, 361
Hsp92I	GRCGYC	1 cut(s)	485
Hsp92II	CATG	5 cut(s)	200, 306, 552, 715, 812
HspAI	GCGC	1 cut(s)	802
KpnI	GGTACC	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	220, 295, 607
LmnI	GCTCC	2 cut(s)	157, 361
MabI	ACCWGGT	1 cut(s)	89
MaeI	CTAG	2 cut(s)	519, 611
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	3 cut(s)	222, 297, 609
MboI	GATC	3 cut(s)	220, 295, 607
MboII	GAAGA	3 cut(s)	178, 523, 668
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	5 cut(s)	233, 380, 402, 472, 651
MlyI	GAGTC	1 cut(s)	653
MnlI	CCTC	6 cut(s)	125, 327, 370, 490, 830, 833
MroXI	GAANNNNTTC	1 cut(s)	577
MseI	TTAA	4 cut(s)	279, 285, 630, 816
MslI	CAYNNNNRTG	1 cut(s)	195
MspCI	CTTAAG	1 cut(s)	629
MspR9I	CCNGG	2 cut(s)	91, 416
MvaI	CCWGG	2 cut(s)	91, 416
MwoI	GCNNNNNNNGC	1 cut(s)	685
NdeII	GATC	3 cut(s)	220, 295, 607
NlaIII	CATG	5 cut(s)	200, 306, 552, 715, 812
NlaIV	GGNNCC	1 cut(s)	95
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	1 cut(s)	306
PciI	ACATGT	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	577
PflMI	CCANNNNNTGG	1 cut(s)	113
PleI	GAGTC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	653
PpuMI	RGGWCCY	1 cut(s)	40
PscI	ACATGT	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	89, 414
PspGI	CCWGG	2 cut(s)	89, 414
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	2 cut(s)	40, 134
PspPPI	RGGWCCY	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	2 cut(s)	95, 865
RsaNI	GTAC	2 cut(s)	94, 864
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	4 cut(s)	279, 285, 630, 816
Sau3AI	GATC	3 cut(s)	220, 295, 607
Sau96I	GGNCC	2 cut(s)	40, 134
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	2 cut(s)	91, 416
SduI	GDGCHC	1 cut(s)	330
SexAI	ACCWGGT	1 cut(s)	89
SfcI	CTRYAG	1 cut(s)	645
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	5 cut(s)	233, 380, 402, 472, 651
SspMI	CTAG	2 cut(s)	519, 611
StyD4I	CCNGG	2 cut(s)	89, 414
TaaI	ACNGT	4 cut(s)	194, 646, 769, 796
TaqI	TCGA	3 cut(s)	103, 298, 515
TasI	AATT	5 cut(s)	233, 380, 402, 472, 651
Tru1I	TTAA	4 cut(s)	279, 285, 630, 816
Tru9I	TTAA	4 cut(s)	279, 285, 630, 816
TscAI	CASTG	2 cut(s)	369, 448
TseFI	GTSAC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	4 cut(s)	384, 414, 537, 797
TspRI	CASTG	2 cut(s)	369, 448
Van91I	CCANNNNNTGG	1 cut(s)	113
Vha464I	CTTAAG	1 cut(s)	629
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	402
XceI	RCATGY	1 cut(s)	306
XmiI	GTMKAC	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	577
XspI	CTAG	2 cut(s)	519, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.