Prupe.4G206900_v2.0.a1

B3 domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
12900900 .. 12901827
928 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G206900.1

Sequence Viewer

Length: 378 bp
ATGTGTGGAAAGAGACCTGCAAATGACTGCGTAGAAGAAACATCGACTAGATCCATCTTGTTCGAATCGGAGAATTCATGTTTTGTAAAAACTTTGACTAAAAAACTATATTCAGTGACAATTCCAAAGGAACTAGCCATAGCTGAAGGTCTTGTGAGGAAGAAGACTGTAAAGCTTCAAGATCCAGCTGGGAGATCATGGATTGTTAAACTTAGAGTCCACAAGTCACCATATCTTCGTTTCGACATGACGAAAGGTTGGGCAAAATGTTGTAGAGCAAACCAGATTTCACAAGGGGACACCATCGTTTTTGAGTTTGTGAAACCAAGTGGGGAAATCAAACACAGGACTTTGGGTATGACGAATGTTACCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.14

Weight (kDa)

9.64

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 25
AclWI GGATC 2 cut(s) 45, 176
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 165
AgsI TTSAA 1 cut(s) 179
AluBI AGCT 3 cut(s) 143, 175, 188
AluI AGCT 3 cut(s) 143, 175, 188
Alw26I GTCTC 1 cut(s) 7
AlwI GGATC 2 cut(s) 45, 176
ApoI RAATTY 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 219
AsuII TTCGAA 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 170
BccI CCATC 2 cut(s) 62, 311
BcoDI GTCTC 1 cut(s) 7
BfaI CTAG 2 cut(s) 48, 134
BfuAI ACCTGC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 170
Bpu14I TTCGAA 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 7
BseYI CCCAGC 1 cut(s) 188
BslFI GGGAC 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 7
BsmFI GGGAC 1 cut(s) 311
Bso31I GGTCTC 1 cut(s) 7
Bsp119I TTCGAA 1 cut(s) 63
Bsp143I GATC 3 cut(s) 50, 181, 194
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 2 cut(s) 45, 176
BspT104I TTCGAA 1 cut(s) 63
BspTNI GGTCTC 1 cut(s) 7
BssMI GATC 3 cut(s) 50, 181, 194
Bst4CI ACNGT 1 cut(s) 169
BstBI TTCGAA 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 212
BstKTI GATC 3 cut(s) 53, 184, 197
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 3 cut(s) 50, 181, 194
BstV2I GAAGAC 1 cut(s) 170
BstX2I RGATCY 2 cut(s) 50, 181
BstYI RGATCY 2 cut(s) 50, 181
BtsIMutI CAGTG 1 cut(s) 120
BveI ACCTGC 1 cut(s) 25
CviAII CATG 3 cut(s) 78, 198, 247
CviJI RGCY 4 cut(s) 137, 143, 175, 188
CviKI_1 RGCY 4 cut(s) 137, 143, 175, 188
DdeI CTNAG 1 cut(s) 212
DpnI GATC 3 cut(s) 52, 183, 196
DpnII GATC 3 cut(s) 50, 181, 194
Eco31I GGTCTC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 165
EcoRI GAATTC 1 cut(s) 73
FaeI CATG 3 cut(s) 81, 201, 250
FaiI YATR 7 cut(s) 79, 109, 140, 199, 232, 248, 359
FaqI GGGAC 1 cut(s) 311
FatI CATG 3 cut(s) 77, 197, 246
FspBI CTAG 2 cut(s) 48, 134
GsaI CCCAGC 1 cut(s) 192
Hin1II CATG 3 cut(s) 81, 201, 250
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 2 cut(s) 65, 216
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 212
Hsp92II CATG 3 cut(s) 81, 201, 250
Kzo9I GATC 3 cut(s) 50, 181, 194
LpnPI CCDG 5 cut(s) 30, 174, 198, 296, 331
MaeI CTAG 2 cut(s) 48, 134
MaeIII GTNAC 3 cut(s) 115, 225, 367
MalI GATC 3 cut(s) 52, 183, 196
MboI GATC 3 cut(s) 50, 181, 194
MboII GAAGA 4 cut(s) 47, 172, 175, 227
MflI RGATCY 2 cut(s) 50, 181
MluCI AATT 3 cut(s) 73, 120, 373
MlyI GAGTC 1 cut(s) 225
MnlI CCTC 1 cut(s) 150
MseI TTAA 2 cut(s) 207, 376
MspA1I CMGCKG 1 cut(s) 188
NdeII GATC 3 cut(s) 50, 181, 194
NlaIII CATG 3 cut(s) 81, 201, 250
NmuCI GTSAC 2 cut(s) 115, 225
NspV TTCGAA 1 cut(s) 63
PfeI GAWTC 1 cut(s) 65
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 188
PsuI RGATCY 2 cut(s) 50, 181
PvuII CAGCTG 1 cut(s) 188
SaqAI TTAA 2 cut(s) 207, 376
Sau3AI GATC 3 cut(s) 50, 181, 194
SchI GAGTC 1 cut(s) 225
SetI ASST 6 cut(s) 19, 145, 151, 177, 190, 259
SfuI TTCGAA 1 cut(s) 63
Sse9I AATT 3 cut(s) 73, 120, 373
SspMI CTAG 2 cut(s) 48, 134
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 3 cut(s) 44, 63, 243
TasI AATT 3 cut(s) 73, 120, 373
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 2 cut(s) 207, 376
Tru9I TTAA 2 cut(s) 207, 376
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 2 cut(s) 115, 225
Tsp45I GTSAC 2 cut(s) 115, 225
TspDTI ATGAA 1 cut(s) 66
TspRI CASTG 1 cut(s) 120
XapI RAATTY 1 cut(s) 73
XspI CTAG 2 cut(s) 48, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.