Rw1G002970

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000210
Physical Location & Seq
Reverse (-)
5454439 .. 5456082
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002970.1

Sequence Viewer

Length: 732 bp
ATGGCTCGTTCAGCACCAGTGCCCGCCTTTTTCCAGGTCCTTGTTGGTGATTTCTCTGAGAAACTGAAAATGCCAACAGCTTTTGTCAACGACTTCAATGGACCAGCACTATGCAAACTTCGAGGCCCTAATGGAAAATGCTGGGATGTAAAATTGGAAGAGAAAAACAATGATCTTTTCTTCCATAAAGGCTGGAAGAAATTTGTGAAGGATAACTATTTGGAGGAAGGAGACTTTCTGGTTTTCAATTATGATGGCAATTCATTGTTCAGTGTGACAATTTATGATGAAAGTGCATGTGAAATGGACATGGAAGAAGCCAAGAGAAAGAGAAGTACTGGCGGTTTTGTTGGGGATTATGTCATGCCTGGGGAGACAAGACTCAGATTGATTGAGTTCAAATCAGAGCATCTTTGCTTTAAGAGAACTATGGAGGGTCACAGACTGTATCAGCTGAACATTCCTATAATAATAGCCAGGGCTAAGGGTCTCATGAGCAAGCGGACTATAGAGCTTCGGGATCCAAGCAACAGATCATGGCCTGTTGCAGTGACCCCCATGGAAGATGGTCGTACACTTATGAACAAAGGCTGGTGTCATTGTTGCAAGGCGAACCAGATTAAGAAAGGGAACACCGTTGTTTTTGAGTTTGTGAAGGGACATGTGAAGCTTCACATCATTAGAGATGAGGGATATGAAGTGATGCTCACAGGTCCTAATATCGTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

243

Amino Acids

27.92

Weight (kDa)

8.74

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 18 - 96 4.5e-17 B3 DNA binding domain
B3 PF02362 148 - 226 1.1e-11 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 24, 342, 502
AclWI GGATC 2 cut(s) 515, 528
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 2 cut(s) 337, 574
AflIII ACRYGT 1 cut(s) 661
AgsI TTSAA 3 cut(s) 97, 247, 400
AjnI CCWGG 3 cut(s) 33, 367, 476
AluBI AGCT 4 cut(s) 80, 454, 514, 670
AluI AGCT 4 cut(s) 80, 454, 514, 670
Alw26I GTCTC 3 cut(s) 225, 368, 494
AlwI GGATC 2 cut(s) 515, 528
AoxI GGCC 2 cut(s) 124, 539
ApoI RAATTY 1 cut(s) 200
AspS9I GGNCC 4 cut(s) 37, 101, 125, 713
AsuHPI GGTGA 1 cut(s) 59
AvaII GGWCC 3 cut(s) 37, 101, 713
BaeGI GKGCMC 1 cut(s) 24
BamHI GGATCC 1 cut(s) 520
BccI CCATC 2 cut(s) 248, 560
BciT130I CCWGG 3 cut(s) 35, 369, 478
BcoDI GTCTC 3 cut(s) 225, 368, 494
BfmI CTRYAG 1 cut(s) 507
BmcAI AGTACT 1 cut(s) 337
Bme1390I CCNGG 3 cut(s) 35, 369, 478
Bme18I GGWCC 3 cut(s) 37, 101, 713
BmgT120I GGNCC 4 cut(s) 37, 101, 125, 713
BmiI GGNNCC 1 cut(s) 522
BmrFI CCNGG 3 cut(s) 35, 369, 478
BmsI GCATC 2 cut(s) 418, 693
Bpu10I CCTNAGC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 494
BsaJI CCNNGG 3 cut(s) 368, 477, 558
Bse1I ACTGG 2 cut(s) 17, 343
BseBI CCWGG 3 cut(s) 35, 369, 478
BseDI CCNNGG 3 cut(s) 368, 477, 558
BseGI GGATG 1 cut(s) 151
BseMII CTCAG 2 cut(s) 48, 397
BseNI ACTGG 2 cut(s) 17, 343
BseSI GKGCMC 1 cut(s) 24
BseYI CCCAGC 1 cut(s) 141
BshFI GGCC 2 cut(s) 126, 541
BslFI GGGAC 1 cut(s) 672
BsmAI GTCTC 3 cut(s) 225, 368, 494
BsmFI GGGAC 1 cut(s) 672
BsnI GGCC 2 cut(s) 126, 541
Bso31I GGTCTC 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 3 cut(s) 172, 520, 533
Bsp19I CCATGG 1 cut(s) 558
BspACI CCGC 3 cut(s) 24, 342, 502
BspANI GGCC 2 cut(s) 126, 541
BspCNI CTCAG 2 cut(s) 49, 396
BspHI TCATGA 1 cut(s) 492
BspLI GGNNCC 1 cut(s) 522
BspPI GGATC 2 cut(s) 515, 528
BspTNI GGTCTC 1 cut(s) 494
BsrI ACTGG 2 cut(s) 17, 343
BssECI CCNNGG 3 cut(s) 368, 477, 558
BssMI GATC 3 cut(s) 172, 520, 533
BssT1I CCWWGG 1 cut(s) 558
Bst2UI CCWGG 3 cut(s) 35, 369, 478
Bst4CI ACNGT 2 cut(s) 447, 637
Bst6I CTCTTC 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 24, 500
BstDEI CTNAG 3 cut(s) 57, 383, 483
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 3 cut(s) 175, 523, 536
BstMAI GTCTC 3 cut(s) 225, 368, 494
BstMBI GATC 3 cut(s) 172, 520, 533
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 3 cut(s) 35, 369, 478
BstNSI RCATGY 2 cut(s) 300, 665
BstSCI CCNGG 3 cut(s) 33, 367, 476
BstSFI CTRYAG 1 cut(s) 507
BstSLI GKGCMC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
BsuRI GGCC 2 cut(s) 126, 541
BtgI CCRYGG 1 cut(s) 558
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 3 cut(s) 24, 277, 555
Cac8I GCNNGC 2 cut(s) 24, 500
CciI TCATGA 1 cut(s) 492
Cfr13I GGNCC 4 cut(s) 37, 101, 125, 713
Csp6I GTAC 2 cut(s) 336, 573
CviAII CATG 7 cut(s) 297, 310, 364, 493, 537, 559, 662
CviQI GTAC 2 cut(s) 336, 573
DdeI CTNAG 3 cut(s) 57, 383, 483
DpnI GATC 3 cut(s) 174, 522, 535
DpnII GATC 3 cut(s) 172, 520, 533
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 558
Eco31I GGTCTC 1 cut(s) 494
Eco47I GGWCC 3 cut(s) 37, 101, 713
EcoO109I RGGNCCY 3 cut(s) 37, 125, 713
EcoRII CCWGG 3 cut(s) 33, 367, 476
EcoT14I CCWWGG 1 cut(s) 558
ErhI CCWWGG 1 cut(s) 558
FaeI CATG 7 cut(s) 300, 313, 367, 496, 540, 562, 665
FaqI GGGAC 1 cut(s) 672
FatI CATG 7 cut(s) 296, 309, 363, 492, 536, 558, 661
FauI CCCGC 1 cut(s) 31
FokI GGATG 1 cut(s) 158
GsaI CCCAGC 1 cut(s) 145
HaeIII GGCC 2 cut(s) 126, 541
Hin1II CATG 7 cut(s) 300, 313, 367, 496, 540, 562, 665
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 668
HinfI GANTC 1 cut(s) 381
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 2 cut(s) 88, 575
Hpy188I TCNGA 3 cut(s) 58, 386, 406
Hpy188III TCNNGA 2 cut(s) 493, 518
Hpy8I GTNNAC 2 cut(s) 88, 575
HpyAV CCTTC 3 cut(s) 202, 221, 649
HpyCH4III ACNGT 2 cut(s) 447, 637
HpyCH4V TGCA 4 cut(s) 114, 296, 548, 606
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 3 cut(s) 57, 383, 483
Hsp92II CATG 7 cut(s) 300, 313, 367, 496, 540, 562, 665
Kzo9I GATC 3 cut(s) 172, 520, 533
LweI GCATC 2 cut(s) 418, 693
MaeIII GTNAC 3 cut(s) 274, 437, 550
MalI GATC 3 cut(s) 174, 522, 535
MboI GATC 3 cut(s) 172, 520, 533
MboII GAAGA 5 cut(s) 170, 172, 208, 326, 575
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 5 cut(s) 152, 200, 247, 259, 279
MlyI GAGTC 1 cut(s) 375
MnlI CCTC 4 cut(s) 116, 217, 427, 682
MseI TTAA 2 cut(s) 420, 621
MspA1I CMGCKG 1 cut(s) 454
MspR9I CCNGG 3 cut(s) 35, 369, 478
MvaI CCWGG 3 cut(s) 35, 369, 478
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 558
NdeII GATC 3 cut(s) 172, 520, 533
NlaIII CATG 7 cut(s) 300, 313, 367, 496, 540, 562, 665
NlaIV GGNNCC 1 cut(s) 522
NmuCI GTSAC 3 cut(s) 274, 437, 550
NspI RCATGY 2 cut(s) 300, 665
PagI TCATGA 1 cut(s) 492
PciI ACATGT 1 cut(s) 661
PleI GAGTC 1 cut(s) 375
PpsI GAGTC 1 cut(s) 375
PpuMI RGGWCCY 2 cut(s) 37, 713
PscI ACATGT 1 cut(s) 661
Psp5II RGGWCCY 2 cut(s) 37, 713
Psp6I CCWGG 3 cut(s) 33, 367, 476
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 3 cut(s) 33, 367, 476
PspN4I GGNNCC 1 cut(s) 522
PspPI GGNCC 4 cut(s) 37, 101, 125, 713
PspPPI RGGWCCY 2 cut(s) 37, 713
PsuI RGATCY 1 cut(s) 520
PvuII CAGCTG 1 cut(s) 454
RsaI GTAC 2 cut(s) 337, 574
RsaNI GTAC 2 cut(s) 336, 573
SaqAI TTAA 2 cut(s) 420, 621
Sau3AI GATC 3 cut(s) 172, 520, 533
Sau96I GGNCC 4 cut(s) 37, 101, 125, 713
ScaI AGTACT 1 cut(s) 337
SchI GAGTC 1 cut(s) 375
ScrFI CCNGG 3 cut(s) 35, 369, 478
SduI GDGCHC 1 cut(s) 24
SetI ASST 6 cut(s) 39, 82, 456, 516, 672, 715
SfaNI GCATC 2 cut(s) 418, 693
SfcI CTRYAG 1 cut(s) 507
SinI GGWCC 3 cut(s) 37, 101, 713
Sse9I AATT 5 cut(s) 152, 200, 247, 259, 279
SsiI CCGC 3 cut(s) 24, 342, 502
StyD4I CCNGG 3 cut(s) 33, 367, 476
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 2 cut(s) 447, 637
TaqI TCGA 1 cut(s) 121
TasI AATT 5 cut(s) 152, 200, 247, 259, 279
TatI WGTACW 1 cut(s) 335
Tru1I TTAA 2 cut(s) 420, 621
Tru9I TTAA 2 cut(s) 420, 621
TscAI CASTG 3 cut(s) 24, 277, 555
TseFI GTSAC 3 cut(s) 274, 437, 550
Tsp45I GTSAC 3 cut(s) 274, 437, 550
TspDTI ATGAA 4 cut(s) 252, 303, 596, 711
TspRI CASTG 3 cut(s) 24, 277, 555
VpaK11BI GGWCC 3 cut(s) 37, 101, 713
XapI RAATTY 1 cut(s) 200
XceI RCATGY 2 cut(s) 300, 665
XcmI CCANNNNNNNNNTGG 1 cut(s) 41
ZrmI AGTACT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.