Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000210

Physical Location & Seq

Genomic Coordinates Forward (+)

3854667 .. 3856453

Gene Structure 1787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1034600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCGAGGAATTCAACAAATCCTTCATGGAGAGTTCGATCCTTTTTCAAGCCCCTGGTTCATGATGACTTCTCTCGGCATTTGTGTCTGCCACCTTTATTCATGGAGAATTTCAATGGACGGCCTCCCTGCAAATGCACTCTTAGAGGCCCGAGTGGGGAATCATGGACAGTAGGTTTGGAAGGAAGAGAGGATGGAAAATTCTTCTTCCGCAAGGGTTGGCAGAATTTCGTTGAGGATCATCTCTTAGAAATCGGTAATTTCTTGGTTTTTAAGTACGATGGCGACACAAAGTTTGATGTCAAAATCTATAATCCAACCGGATGTGAAAAGGAGGAAGCTGTAGCTGCCAAGAATACAACTGGAAATCTAGCTAGTATTCGTAACCGAAAGAAAAGCATGTTGTACAAACCTGCTGATGTGAAAGAAACATCAGATGGACACATCGCGTTCAGATCAAAGTATAAAACATGCTTCAAAGCAACTGTGCCGAAGATTCCTTATCGAATGACTGTCCCCAAGAAGCTAGCTGTAGCAAAAGGTCTCATTGAAAAGGAGAGGGTGAGGCTTACAGACCCGAATGGGAAAACATGGAAAGTTAAGCTCCGGGTCGAAGAGATAAAATCTTGTGGCAGTCGTTTGCTCATGACGGAAGGGTTGCTGAAATGTTGGCATGCGAACAACATTTCACCCGGGGACACCGCCGTGTTTGAGCTTGTCAACGAAAAGAGAAGTGAAATGAAGATTCATTTTTTCAGAGCTGAAGCCGGAGGAAAGAGGCCTACCGTTGTGCTTGAACTTGATGCCTCTGACTCTGTTGTGGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

277

Amino Acids

31.44

Weight (kDa)

9.47

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	15 - 104	9.8e-19	B3 DNA binding domain
B3	PF02362	169 - 254	8.2e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66980
fragaria_vesca	FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica	MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica	Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis	pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis	RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata	RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora	Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii	Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa	Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha	Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana	Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	421
AccII	CGCG	1 cut(s)	449
AciI	CCGC	2 cut(s)	211, 702
AclWI	GGATC	2 cut(s)	33, 246
AcsI	RAATTY	4 cut(s)	10, 109, 200, 226
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	2 cut(s)	278, 407
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	6 cut(s)	15, 49, 115, 478, 551, 797
AjnI	CCWGG	1 cut(s)	54
AleI	CACNNNNGTG	1 cut(s)	704
AluBI	AGCT	8 cut(s)	341, 347, 374, 526, 530, 604, 715, 761
AluI	AGCT	8 cut(s)	341, 347, 374, 526, 530, 604, 715, 761
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	2 cut(s)	33, 246
Ama87I	CYCGRG	2 cut(s)	151, 692
AoxI	GGCC	3 cut(s)	122, 148, 779
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	4 cut(s)	10, 109, 200, 226
ArsI	GACNNNNNNTTYG	4 cut(s)	160, 192, 278, 310
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	3 cut(s)	608, 693, 694
AsuHPI	GGTGA	2 cut(s)	574, 681
AsuNHI	GCTAGC	1 cut(s)	526
AvaI	CYCGRG	2 cut(s)	151, 692
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	3 cut(s)	188, 275, 431
BceAI	ACGGC	2 cut(s)	137, 689
BciT130I	CCWGG	1 cut(s)	56
BcnI	CCSGG	3 cut(s)	608, 693, 694
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	4 cut(s)	371, 375, 527, 829
BfmI	CTRYAG	2 cut(s)	342, 531
BfuAI	ACCTGC	1 cut(s)	421
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	4 cut(s)	56, 608, 693, 694
BmeT110I	CYCGRG	2 cut(s)	151, 692
BmgT120I	GGNCC	1 cut(s)	149
BmrFI	CCNGG	4 cut(s)	56, 608, 693, 694
BmsI	GCATC	1 cut(s)	793
BmtI	GCTAGC	1 cut(s)	530
BpuMI	CCSGG	3 cut(s)	608, 693, 694
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	3 cut(s)	54, 692, 693
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	3 cut(s)	54, 692, 693
BseGI	GGATG	2 cut(s)	199, 329
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	449
BshFI	GGCC	3 cut(s)	124, 150, 781
BsiHKCI	CYCGRG	2 cut(s)	151, 692
BsiSI	CCGG	4 cut(s)	321, 607, 693, 768
BslFI	GGGAC	2 cut(s)	500, 710
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	548
BsmFI	GGGAC	2 cut(s)	500, 710
BsnI	GGCC	3 cut(s)	124, 150, 781
Bso31I	GGTCTC	1 cut(s)	548
BsoBI	CYCGRG	2 cut(s)	151, 692
Bsp1407I	TGTACA	1 cut(s)	405
Bsp143I	GATC	3 cut(s)	38, 238, 455
BspACI	CCGC	2 cut(s)	211, 702
BspANI	GGCC	3 cut(s)	124, 150, 781
BspFNI	CGCG	1 cut(s)	449
BspHI	TCATGA	2 cut(s)	61, 645
BspMI	ACCTGC	1 cut(s)	421
BspOI	GCTAGC	1 cut(s)	530
BspPI	GGATC	2 cut(s)	33, 246
BspTNI	GGTCTC	1 cut(s)	548
BsrGI	TGTACA	1 cut(s)	405
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	3 cut(s)	54, 692, 693
BssMI	GATC	3 cut(s)	38, 238, 455
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	4 cut(s)	172, 487, 514, 787
Bst6I	CTCTTC	2 cut(s)	181, 609
BstAUI	TGTACA	1 cut(s)	405
BstC8I	GCNNGC	2 cut(s)	528, 675
BstDEI	CTNAG	2 cut(s)	143, 247
BstF5I	GGATG	2 cut(s)	199, 329
BstFNI	CGCG	1 cut(s)	449
BstKTI	GATC	3 cut(s)	41, 241, 458
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	3 cut(s)	38, 238, 455
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	3 cut(s)	403, 474, 677
BstSCI	CCNGG	4 cut(s)	54, 606, 691, 692
BstSFI	CTRYAG	2 cut(s)	342, 531
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	1 cut(s)	334
BsuRI	GGCC	3 cut(s)	124, 150, 781
BtgZI	GCGATG	1 cut(s)	430
BtsCI	GGATG	2 cut(s)	199, 329
BveI	ACCTGC	1 cut(s)	421
Cac8I	GCNNGC	2 cut(s)	528, 675
CciI	TCATGA	2 cut(s)	61, 645
Cfr13I	GGNCC	1 cut(s)	149
Cfr9I	CCCGGG	1 cut(s)	692
Csp6I	GTAC	2 cut(s)	277, 406
CviAII	CATG	9 cut(s)	27, 62, 103, 165, 400, 471, 591, 646, 674
CviQI	GTAC	2 cut(s)	277, 406
DdeI	CTNAG	2 cut(s)	143, 247
DpnI	GATC	3 cut(s)	40, 240, 457
DpnII	GATC	3 cut(s)	38, 238, 455
Eam1104I	CTCTTC	2 cut(s)	181, 609
EarI	CTCTTC	2 cut(s)	181, 609
Eco147I	AGGCCT	1 cut(s)	781
Eco31I	GGTCTC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	783
Eco88I	CYCGRG	2 cut(s)	151, 692
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	54
FaeI	CATG	9 cut(s)	30, 65, 106, 168, 403, 474, 594, 649, 677
FaqI	GGGAC	2 cut(s)	500, 710
FatI	CATG	9 cut(s)	26, 61, 102, 164, 399, 470, 590, 645, 673
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	2 cut(s)	206, 336
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	4 cut(s)	371, 375, 527, 829
GluI	GCNGC	1 cut(s)	348
HaeIII	GGCC	3 cut(s)	124, 150, 781
HapII	CCGG	4 cut(s)	321, 607, 693, 768
Hin1II	CATG	9 cut(s)	30, 65, 106, 168, 403, 474, 594, 649, 677
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HinfI	GANTC	4 cut(s)	161, 496, 745, 812
HpaII	CCGG	4 cut(s)	321, 607, 693, 768
HphI	GGTGA	2 cut(s)	574, 681
Hpy166II	GTNNAC	1 cut(s)	721
Hpy188I	TCNGA	4 cut(s)	436, 455, 758, 811
Hpy188III	TCNNGA	2 cut(s)	62, 646
Hpy8I	GTNNAC	1 cut(s)	721
HpyAV	CCTTC	3 cut(s)	33, 176, 647
HpyCH4III	ACNGT	4 cut(s)	172, 487, 514, 787
HpyCH4V	TGCA	2 cut(s)	132, 138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	2 cut(s)	143, 247
Hsp92II	CATG	9 cut(s)	30, 65, 106, 168, 403, 474, 594, 649, 677
Kzo9I	GATC	3 cut(s)	38, 238, 455
LmnI	GCTCC	1 cut(s)	609
LpnPI	CCDG	9 cut(s)	41, 68, 142, 334, 348, 426, 620, 706, 781
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	1 cut(s)	793
MaeI	CTAG	4 cut(s)	371, 375, 527, 829
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	3 cut(s)	40, 240, 457
MboI	GATC	3 cut(s)	38, 238, 455
MboII	GAAGA	6 cut(s)	196, 198, 199, 505, 626, 754
MluCI	AATT	5 cut(s)	10, 109, 200, 226, 259
MlyI	GAGTC	1 cut(s)	806
MmeI	TCCRAC	1 cut(s)	341
MseI	TTAA	2 cut(s)	273, 600
MslI	CAYNNNNRTG	1 cut(s)	704
MspI	CCGG	4 cut(s)	321, 607, 693, 768
MspR9I	CCNGG	4 cut(s)	56, 608, 693, 694
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	347
NciI	CCSGG	3 cut(s)	608, 693, 694
NdeII	GATC	3 cut(s)	38, 238, 455
NheI	GCTAGC	1 cut(s)	526
NlaIII	CATG	9 cut(s)	30, 65, 106, 168, 403, 474, 594, 649, 677
NmeAIII	GCCGAG	1 cut(s)	55
NspI	RCATGY	3 cut(s)	403, 474, 677
OliI	CACNNNNGTG	1 cut(s)	704
PaeI	GCATGC	1 cut(s)	677
PagI	TCATGA	2 cut(s)	61, 645
PceI	AGGCCT	1 cut(s)	781
PfeI	GAWTC	3 cut(s)	161, 496, 745
PkrI	GCNGC	1 cut(s)	349
PleI	GAGTC	1 cut(s)	806
PpsI	GAGTC	1 cut(s)	806
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	149
RsaI	GTAC	2 cut(s)	278, 407
RsaNI	GTAC	2 cut(s)	277, 406
RseI	CAYNNNNRTG	1 cut(s)	704
SaqAI	TTAA	2 cut(s)	273, 600
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	3 cut(s)	38, 238, 455
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	1 cut(s)	806
ScrFI	CCNGG	4 cut(s)	56, 608, 693, 694
SfaNI	GCATC	1 cut(s)	793
SfcI	CTRYAG	2 cut(s)	342, 531
SmaI	CCCGGG	1 cut(s)	694
SmiMI	CAYNNNNRTG	1 cut(s)	704
SphI	GCATGC	1 cut(s)	677
Sse9I	AATT	5 cut(s)	10, 109, 200, 226, 259
SseBI	AGGCCT	1 cut(s)	781
SsiI	CCGC	2 cut(s)	211, 702
SspMI	CTAG	4 cut(s)	371, 375, 527, 829
StuI	AGGCCT	1 cut(s)	781
StyD4I	CCNGG	4 cut(s)	54, 606, 691, 692
TaaI	ACNGT	4 cut(s)	172, 487, 514, 787
TaqI	TCGA	3 cut(s)	37, 505, 612
TasI	AATT	5 cut(s)	10, 109, 200, 226, 259
TatI	WGTACW	1 cut(s)	405
TfiI	GAWTC	3 cut(s)	161, 496, 745
Tru1I	TTAA	2 cut(s)	273, 600
Tru9I	TTAA	2 cut(s)	273, 600
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	5 cut(s)	15, 50, 91, 737, 755
TspGWI	ACGGA	1 cut(s)	665
TspMI	CCCGGG	1 cut(s)	692
XapI	RAATTY	4 cut(s)	10, 109, 200, 226
XceI	RCATGY	3 cut(s)	403, 474, 677
XmaI	CCCGGG	1 cut(s)	692
XspI	CTAG	4 cut(s)	371, 375, 527, 829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.